Dr. Kyrpides is the Head of the Prokaryotic Super Program and the Microbiome Data Science Group at the DOE Joint Genome Institute. Prior to joining the JGI, Dr. Kyrpides led the development of the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at Urbana-Champaign and with Ross Overbeek at the Argonne National Laboratory. He received the van Niel International Prize for Studies in Bacterial Systematics (2011-2014); Elected Fellow: AAM
I am interested in an array of questions regarding protistan evolution and diversity. I have worked in protistology since my 1st undergraduate year, then did a masters in taxonomy of testate amoebae and a PhD in evolutionary biology, focusing on amoebozoans. My research focuses on constructing phylogenetic trees to answer broad questions in the evolutionary biology of microbes.
Ph.D. Biology, Boston University. NATO Advanced Study Institute: Molecular Ecology of Aquatic Microbes. NASA Planetary Biology Intern at the Center for Microbial Ecology, Michigan State University, East Lansing, MI. Marine Biological Laboratory, Summer Course in Microbial Diversity, Woods Hole, MA
Research Projects include: Microbial Ecology; Plant-Microbe Interactions; Metagenomics; Microbial Discovery; Biogeochemistry.
Ph.D. Agricultural Engineer, Institute of Sustainable Agriculture, CSIC, and University of Cordoba, Cordoba, Spain. July, 1999.
Population biology and biogeography of soilborne pathogens and biocontrol angents in the rhizosphere. Integrated control of plant pathogens; Rhizosphere microbial ecology; Biocontrol; Molecular diagnosis; Metagenomic analysis of microbial populations.
Senior scientist (DR1) INRA ; Microbial and ecosystem ecologist . Research team Leader at the Microbial ecology centre of Lyon-Villeurbanne (France) www.ecologiemicrobiennelyon.fr/spip.php?rubrique31
Research topics include : response of microbial communities involved in N dynamics (nitrification, denitrification...) to global change factors and disturbances ; and bacterial biodiversity-ecosystem functioning relationships.
* >110 articles in peer-reviewed journals; h=44 (WoS) or 54 (GoogleScholar)
* Member of the Academy of Europe www.ae-info.org/ae/User/Le_Roux_Xavier
* See my profile: https://www.researchgate.net/profile/X_Roux/info
* Coordinator of the European network BiodivERsA www.eurobiodiversa.org
Professor of Microbiology at the University of Alabama at Birmingham (UAB); Director of Informatics for the UAB Center for Clinical and Translational Science; Data Secretary of the International Committee on Taxonomy of Viruses (ICTV) and Editor-In-Chief of the ICTV Online (10th) Report on Virus Taxonomy. My research focuses on contributing to the understanding of microbial (especially viral) genomics and evolution by developing and utilizing computational tools and bioinformatics techniques to mine sequence and other data for significant patterns characteristic of function and/or evolution.
I was awarded my PhD from James Cook University in 2001 where my research project focussed on photosynthesis and bleaching in the symbiotic giant clam Tridacna gigas. I then moved to the University of Queensland where I was a Postdoctoral Research Fellow in the Centre for Marine Studies in the laboratory of Prof Ove Hoegh-Guldberg. In 2007 I returned to James Cook Univeristy as a Lecturer in the discpline of Biochemistry, I am now a Associate Professor and head of the Symbiosis Genomics Research Group and a Chief Investigator in the ARC Centre of Excellence for Coral Reef Studies. The overarching aim of my research is to link transcriptomic and metabolomic changes to whole organism responses and acclimation. My research utilises genomic and metabolomic techniques to determine how the coral holobiont responds to anthropogenic changes, including increasing temperatures, ocean acidification and eutrophication.
Head of the Vaccine Development Laboratory, Instituto Butantan, former Director of the Center of Biotechnology and Vice President of Fundação Butantan. Current Member of the Academic Management Board of the Erasmus -LIVE International Vaccinology Course, Former Steering Committee Member of the Developing Countries Vaccine Manufacturing Network.
David Levine, PT, PhD, DPT, Diplomate ABPTS, CCRP, Cert. DN
Dr. Levine is a Professor and the Walter M. Cline Chair of Excellence in Physical Therapy at the University of Tennessee at Chattanooga. He is an adjunct professor at the University Of Tennessee College Of Veterinary Medicine and North Carolina State University College of Veterinary Medicine. In addition, he is board certified as a specialist in orthopedics by the American Board of Physical Therapy Specialties and is also certified in dry needling. Dr. Levine has been working and conducting research in many areas with an emphasis in veterinary physical rehabilitation and is co-director of the University of Tennessee certificate program in canine rehabilitation. He is a co-editor of multiple books including “Canine Rehabilitation and Physical Therapy”, “Essential Facts of Physiotherapy in Dogs and Cats”, and Gait Analysis: An Introduction. He continues to practice in canine rehabilitation and human physical therapy in addition to his University position. He has presented at over 100 conferences, and has lectured in more than a dozen countries. Dr. Levine has published in numerous peer-reviewed journals with over 75 publications. His latest research focuses on bacterial contamination in medical equipment, animal assisted therapy, and laser to improve muscle endurance.
Dr. Xing Li is an Assistant Professor and Associate Consultant in the Division of Biomedical Statistics and Informatics, Department of Health Science Research at Mayo Clinic - voted the best hospital by U.S. News & World Report. Dr. Li completed his PhD in Bioinformatics from The University of Michigan at Ann Arbor, Michigan, USA. Dr. Li also holds a Masters Degree in Biochemistry and Molecular Biology and Bachelors Degree in Microbiology. Dr. Li’s research interests focus on machine learning, bioinformatics, and statistical data mining in large scale data in biomedical research, such as next generation sequencing data (whole genome sequencing, RNA-seq, microarray data), in the file. He has published more than 20 peer-reviewed papers in reputable journals and book chapters in the fields of Bioinformatics and Biostatistics, cancer research, cardiovascular disease, embryonic stem cell (ESC) and induced pluripotent stem cell (iPSC) research, and human genomics, genetics and development, and Microbiology. Dr. Li’s publications have been highlighted as Journal Cover Stories, Journal Featured Articles, Highlights Section Papers, Must Read by Faculty 1000, and ESC & iPSC News, etc. Dr. Li has been developing data analysis tools, such as RCircle and PCA3d, etc. Dr. Li is also a member of American Association for Cancer Research (AACR), International Society for Computational Biology (ISCB), American Statistics Association (ASA) and American Heart Association (AHA).
Nick works as an Independent Research Fellow in the Institute for Microbiology and Infection at the University of Birmingham, sponsored by an MRC Fellowship in Biomedical Informatics. His research explores the use of cutting-edge genomics and metagenomics approaches to the diagnosis, treatment and surveillance of infectious disease. Nick has so far used high-throughput sequencing to investigate outbreaks of important pathogens such as Pseudomonas aeruginosa,Acinetobacter baumannii and Shiga-toxin producing Escherichia coli. His current work focuses on the application of novel sequencing technologies such as the Oxford Nanopore for genome diagnosis and epidemiology of important pathogens, including most recently real-time surveillance of the Ebola outbreak in West Africa. A more general aim is to develop bioinformatics tools to aid the interpretation of genome and metagenome-scale data in routine clinical practice in collaboration.
Research Asst. Professor, Marine Sciences, Univ. of North Carolina - Chapel Hill (2003-2017); Postdoctoral fellow, MPI – Marine Microbiology, Bremen, Germany (2000-2003); Research assistant and postdoctoral associate, Civil Engineering Dept., Northwestern University, Evanston, Ill. (1994-1999); PhD, Bacteriology, University of Wisconsin - Madison (1994); BS (1984) and MS (1986), Biology and Marine Microbiology, University of Massachusetts - Boston.
Research projects include: new methods to directly link species identity with carbon source utilization; direct profiling of microbial communities without PCR; direct detection of microbial enzymes in environmental samples.