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Joseph Gillespie
Platinum Contributor
60,300 Points

Contributions by role

Author 100
Editor 60,200

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Entomology
Evolutionary Studies
Genomics
Microbiology
Zoology
Bioinformatics
Molecular Biology
Taxonomy
Biogeography
Ecology
Statistics
Veterinary Medicine
Public Health
Conservation Biology
Computational Biology
Animal Behavior
Cell Biology
Parasitology
Genetics
Biochemistry
Global Health
Agricultural Science
Food Science and Technology
Plant Science
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Nutrition
Biodiversity
Epidemiology
Infectious Diseases
Freshwater Biology
Biotechnology
Andrology
Virology
Aquaculture, Fisheries and Fish Science
Bioengineering
Biophysics
Geriatrics
Orthopedics
Toxicology
Computational Science
Environmental Contamination and Remediation
Paleontology
Environmental Impacts
Population Biology
Dentistry
Anthropology
Developmental Biology
Mycology
Oncology
COVID-19
Mathematical Biology
Gynecology and Obstetrics
Women's Health
Data Mining and Machine Learning
Emergency and Critical Care
Gastroenterology and Hepatology
Internal Medicine
Data Science
Pediatrics
Synthetic Biology
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Immunology
Marine Biology
Databases
Digital Libraries
Ethical Issues
Translational Medicine
Climate Change Biology
Ecosystem Science
Biological Oceanography
Science and Medical Education
Human-Computer Interaction
Histology
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Spatial and Geographic Information Science
Cardiology
Surgery and Surgical Specialties
Respiratory Medicine
Medical Genetics
Dermatology
Hematology
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Neuroscience
Kinesiology
Psychiatry and Psychology
Natural Resource Management
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Healthcare Services
Environmental Health
Urology
Obesity
Ecotoxicology
Aquatic and Marine Chemistry
Atmospheric Chemistry
Platinum Contributor

Joseph J Gillespie

PeerJ Editor & Author

Summary

Dr. Gillespie is an evolutionary biologist with broad interests in organismal and molecular evolution. The major focus of his current research is deciphering the mechanisms by which obligate intracellular species of Rickettsiales (Alphaproteobacteria) invade, survive and replicate within eukaryotic cells.

In research funded by the National Institutes of Health, Dr. Gillespie utilizes phylogenetics, comparative genomics and bioinformatics to guide experimental research on various pathogenic species of Rickettsia and their associated arthropod vectors. His early research resulted in the reclassification of Rickettsia species and the identification of many lineage-specific pathogenicity factors. Through years of intense scrutinization of dozens of diverse rickettsial genomes, Dr. Gillespie and colleagues have described a large, dynamic mobilome for Rickettsia species, resulting in the identification of integrative conjugative elements as the vehicles for seeding Rickettsia genomes with many of the factors underlying obligate intracellular biology and pathogenesis. Via an iterative process of genome sequencing, phylogenomics, bioinformatics, and classical molecular biology and microbiology, Dr. Gillespie continues to lead and assist research projects on the characterization of rickettsial gene and protein function, as well as the description of cell envelope glycoconjugates.

Bioinformatics Cell Biology Computational Biology Databases Entomology Evolutionary Studies Genomics Infectious Diseases Metabolic Sciences Microbiology Molecular Biology Parasitology Taxonomy

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

University of Maryland at Baltimore

Work details

Assistant Professor

University of Maryland at Baltimore
April 2013
Microbiology and Immunology
Dr. Gillespie is an evolutionary biologist with broad interests in organismal and molecular evolution. The major focus of his current research is deciphering the mechanisms by which obligate intracellular species of Rickettsiales (Alphaproteobacteria) invade, survive and replicate within eukaryotic cells.

Websites

  • Gillespie Research
  • PubMed Search
  • Google Scholar

PeerJ Contributions

  • Articles 1
  • Edited 458
December 17, 2020
Evolution of Wolbachia mutualism and reproductive parasitism: insight from two novel strains that co-infect cat fleas
Timothy P. Driscoll, Victoria I. Verhoeve, Cassia Brockway, Darin L. Shrewsberry, Mariah Plumer, Spiridon E. Sevdalis, John F. Beckmann, Laura M. Krueger, Kevin R. Macaluso, Abdu F. Azad, Joseph J. Gillespie
https://doi.org/10.7717/peerj.10646 PubMed 33362982

Academic Editor on

April 14, 2025
Catecholamine exposure and the gut microbiota in obstructive sleep apnea
Joe Alcock, Dongdong Lin, Prashanth Setty, Lee K. Brown, Armand E.K. Dichosa, Benjamin J. Burnett, Cliff S. Han, Henry C. Lin
https://doi.org/10.7717/peerj.19203 PubMed 40247843
March 5, 2025
Identifying leptospirosis hotspots in Selangor: uncovering climatic connections using remote sensing and developing a predictive model
Muhammad Akram Ab Kadir, Rosliza Abdul Manaf, Siti Aisah Mokhtar, Luthffi Idzhar Ismail
https://doi.org/10.7717/peerj.18851 PubMed 40061226
January 23, 2025
Evolutionary patterns of the SSU rRNA (V4 region) secondary structure in genus Euplotes (Ciliophora, Spirotrichea): insights into cryptic species and primitive traits
Ratih Kusuma Wardani, Ragib Ahsan, Mann Kyoon Shin
https://doi.org/10.7717/peerj.18852 PubMed 39866570
December 3, 2024
Phytochemical screening and in vitro antibacterial activity of Echinops kebericho Mesfin tuber extracts: experimental studies
Jiregna Gari Negasa, Ibsa Teshome, Edilu Jorga Sarba, Bekiyad Shasho Daro
https://doi.org/10.7717/peerj.18554 PubMed 39650562
November 19, 2024
Klastomycter conodentatus, gen et sp. nov., a small early Permian parareptile with conical teeth from Richards Spur, Oklahoma
Robert R. Reisz, Dylan C.T. Rowe, Joseph J. Bevitt
https://doi.org/10.7717/peerj.18393 PubMed 39583101
November 12, 2024
Physical development of infants born to patients with COVID-19 during pregnancy: 2 years of age
Anna Eligulashvili, Moshe Gordon, Sheri Nemerofsky, Tomas Havranek, Peter Bernstein, Judy Yee, Wei Hou, Tim Duong
https://doi.org/10.7717/peerj.18481 PubMed 39553723
November 8, 2024
Simple, reference-independent assessment to empirically guide correction and polishing of hybrid microbial community metagenomic assembly
Garrett J. Smith, Theo A. van Alen, Maartje A.H.J. van Kessel, Sebastian Lücker
https://doi.org/10.7717/peerj.18132 PubMed 39529629
October 31, 2024
The influence of inactivated entomopathogenic bacterium Bacillus thuringiensis on the immune responses of the Colorado potato beetle
Olga V. Polenogova, Natalia A. Kryukova, Tatyana Klementeva, Anna S. Artemchenko, Alexander D. Lukin, Viktor P. Khodyrev, Irina Slepneva, Yana Vorontsova, Viktor V. Glupov
https://doi.org/10.7717/peerj.18259 PubMed 39494291
October 28, 2024
The bacterial strains JAM1T and GP59 of the species Methylophaga nitratireducenticrescens differ in their expression profiles of denitrification genes in oxic and anoxic cultures
Livie Lestin, Richard Villemur
https://doi.org/10.7717/peerj.18361 PubMed 39484211
October 24, 2024
Bacterial production of polyhydroxyalkanoates (PHAs) using various waste carbon sources
Aansa Naseem, Ijaz Rasul, Zulfiqar Ali Raza, Faizan Muneer, Asad ur Rehman, Habibullah Nadeem
https://doi.org/10.7717/peerj.17936 PubMed 39465164
October 22, 2024
A Python program to merge Sanger sequences: an update
Shiming Lin, Bifang Huang, Li-li Zhao, Fei Xu, Danni Pan, Xuanyang Chen, Shiqiang Lin
https://doi.org/10.7717/peerj.18363 PubMed 39465179
September 25, 2024
RAPiD: a rapid and accurate plant pathogen identification pipeline for on-site nanopore sequencing
Stephen Knobloch, Fatemeh Salimi, Anthony Buaya, Sebastian Ploch, Marco Thines
https://doi.org/10.7717/peerj.17893 PubMed 39346055
September 20, 2024
Automated evaluation of multiple sequence alignment methods to handle third generation sequencing errors
Coralie Rohmer, Hélène Touzet, Antoine Limasset
https://doi.org/10.7717/peerj.17731
September 18, 2024
Buscando Luciérnagas: findings on Mexican fireflies from an 8-year virtual citizen science project
Ek del-Val, Ana M. Flores-Gutiérrez, Regina González, Adrián Calleros
https://doi.org/10.7717/peerj.18141 PubMed 39308813
September 5, 2024
Effect of sodium formate and lactic acid bacteria treated rye silage on methane yield and energy balance in Hanwoo steers
Yongjun Choi, Jayeon Kim, Geumhwi Bang, Nayeon Kim, Krishnaraj Thirugnanasambantham, Sangrak Lee, Kyoung Hoon Kim, Rajaraman Bharanidharan
https://doi.org/10.7717/peerj.17920 PubMed 39247542
July 26, 2024
Genotypes and phenotypes in a Wolbachia-ant symbiosis
Crystal L. Frost, Rowena Mitchell, Judith Elizabeth Smith, William O.H. Hughes
https://doi.org/10.7717/peerj.17781 PubMed 39076777
July 23, 2024
Patterns of molecular evolution in a parthenogenic terrestrial isopod (Trichoniscus pusillus)
Emily Yarbrough, Christopher Chandler
https://doi.org/10.7717/peerj.17780 PubMed 39071119
July 12, 2024
Molecular identification of Trichobilharzia species in recreational waters in North-Eastern Poland
Joanna Korycińska, Jana Bulantová, Petr Horák, Ewa Dzika
https://doi.org/10.7717/peerj.17598 PubMed 39011383
July 9, 2024
Innovative infrastructure to access Brazilian fungal diversity using deep learning
Thiago Chaves, Joicymara Santos Xavier, Alfeu Gonçalves dos Santos, Kelmer Martins-Cunha, Fernanda Karstedt, Thiago Kossmann, Susanne Sourell, Eloisa Leopoldo, Miriam Nathalie Fortuna Ferreira, Roger Farias, Mahatmã Titton, Genivaldo Alves-Silva, Felipe Bittencourt, Dener Bortolini, Emerson L. Gumboski, Aldo von Wangenheim, Aristóteles Góes-Neto, Elisandro Ricardo Drechsler-Santos
https://doi.org/10.7717/peerj.17686 PubMed 39006015
July 8, 2024
Establishing Silphids in the invertebrate DNA toolbox: a proof of concept
Katherine E. Higdon, Kristin E. Brzeski, Melanie A. Ottino, Tara L. Bal
https://doi.org/10.7717/peerj.17636 PubMed 38993975
June 24, 2024
Sequence and structure analyses of lytic polysaccharide monooxygenases mined from metagenomic DNA of humus samples around white-rot fungi in Cuc Phuong tropical forest, Vietnam
Nam-Hai Truong, Thi-Thu-Hong Le, Hong-Duong Nguyen, Hong-Thanh Nguyen, Trong-Khoa Dao, Thi-Minh-Nguyet Tran, Huyen-Linh Tran, Dinh-Trong Nguyen, Thi-Quy Nguyen, Thi-Hong-Thao Phan, Thi-Huyen Do, Ngoc-Han Phan, Thi-Cam-Nhung Ngo, Van-Van Vu
https://doi.org/10.7717/peerj.17553 PubMed 38938609
June 21, 2024
Towards the development of cost-effective point-of-care diagnostic tools for poverty-related infectious diseases in sub-Saharan Africa
Benedict Ofori, Seth Twum, Silas Nkansah Yeboah, Felix Ansah, Kwabena Amofa Nketia Sarpong
https://doi.org/10.7717/peerj.17198 PubMed 38915381
June 12, 2024
Tick hazard in the South Downs National Park (UK): species, distribution, key locations for future interventions, site density, habitats
Jo Middleton, Ian Cooper, Anja S. Rott
https://doi.org/10.7717/peerj.17483 PubMed 38881864
May 31, 2024
Association between yoga and related contextual factors with moderate-to-vigorous physical activity among children and youth aged 5 to 17 years across five Indian states
Jamin Patel, Sheriff Ibrahim, Jasmin Bhawra, Anuradha Khadilkar, Tarun Reddy Katapally
https://doi.org/10.7717/peerj.17369 PubMed 38832045
May 29, 2024
Reassessment of pore occlusion in some diatom taxa with re-evaluation of Placoneis Mereschkowsky (Bacillariophyceae: Cymbellales) and description of two new genera
Andrei Mironov, Anton Glushchenko, Yevhen Maltsev, Sergey Genkal, Irina Kuznetsova, John Patrick Kociolek, Yan Liu, Maxim Kulikovskiy
https://doi.org/10.7717/peerj.17278 PubMed 38827282
May 28, 2024
Single-cell transcriptome reveals the heterogeneity of malignant ductal cells and the prognostic value of REG4 and SPINK1 in primary pancreatic ductal adenocarcinoma
Yutian Ji, Qianhui Xu, Weilin Wang
https://doi.org/10.7717/peerj.17350 PubMed 38827297
May 28, 2024
Effect of erythromycin residuals in food on the development of resistance in Streptococcus pneumoniae: an in vivo study in Galleria mellonella
Yuliia Baranchyk, Zina Gestels, Dorien Van den Bossche, Saïd Abdellati, Basil Britto Xavier, Sheeba Santhini Manoharan-Basil, Chris Kenyon
https://doi.org/10.7717/peerj.17463 PubMed 38827315
May 20, 2024
Unpredictable soil conditions can affect the prevalence of a microbial symbiosis
Trey J. Scott, Calum J. Stephenson, Sandeep Rao, David C. Queller, Joan E. Strassmann
https://doi.org/10.7717/peerj.17445 PubMed 38784393
April 30, 2024
Interactions between chaperone and energy storage networks during the evolution of Legionella pneumophila under heat shock
Jeffrey Liang, Sebastien P. Faucher
https://doi.org/10.7717/peerj.17197 PubMed 38708341
April 25, 2024
Carbapenemase genes in clinical and environmental isolates of Acinetobacter spp. from Quito, Ecuador
Nicole Sotomayor, José Eduardo Villacis, Noela Burneo, Jorge Reyes, Sonia Zapata, Rosa de los Ángeles Bayas-Rea
https://doi.org/10.7717/peerj.17199 PubMed 38680892
April 18, 2024
COVID-19 and malaria co-infection: a systematic review of clinical outcomes in endemic areas
Amal H. Mohamed, Ebtihal Eltyeb, Badria Said, Raga Eltayeb, Abdullah Algaissi, Didier Hober, Abdulaziz H. Alhazmi
https://doi.org/10.7717/peerj.17160 PubMed 38646476
April 5, 2024
Heterogeneity of the effect of the COVID-19 pandemic on the incidence of Metabolic Syndrome onset at a Japanese campus
Toshiharu Mitsuhashi
https://doi.org/10.7717/peerj.17013 PubMed 38590703
April 4, 2024
Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host
Dennis Carhuaricra-Huaman, Irys H.L. Gonzalez, Patricia L. Ramos, Aline M. da Silva, Joao C. Setubal
https://doi.org/10.7717/peerj.17206 PubMed 38584940
March 29, 2024
In the social amoeba Dictyostelium discoideum, shortened stalks may limit obligate cheater success even when exploitable partners are available
James Medina, Tyler Larsen, David C. Queller, Joan E. Strassmann
https://doi.org/10.7717/peerj.17118 PubMed 38562996
March 21, 2024
Foveavelia, a new South American genus of Veliinae (Hemiptera: Heteroptera: Veliidae)
Higor D. D. Rodrigues, Felipe F. F. Moreira
https://doi.org/10.7717/peerj.16772 PubMed 38525284
March 12, 2024
Impact of the coronavirus disease 2019 pandemic on the diversity of notifiable infectious diseases: a case study in Shanghai, China
Yongfang Zhang, Wenli Feng
https://doi.org/10.7717/peerj.17124 PubMed 38495754
March 1, 2024
Benchmarking a targeted 16S ribosomal RNA gene enrichment approach to reconstruct ancient microbial communities
Raphael Eisenhofer, Sterling Wright, Laura Weyrich
https://doi.org/10.7717/peerj.16770 PubMed 38440408
February 29, 2024
A Cellular Potts Model of the interplay of synchronization and aggregation
Rose Una, Tilmann Glimm
https://doi.org/10.7717/peerj.16974 PubMed 38435996
January 2, 2024
Speeding up iterative applications of the BUILD supertree algorithm
Benjamin D. Redelings, Mark T. Holder
https://doi.org/10.7717/peerj.16624 PubMed 38188165
December 19, 2023
Choline regulation of triglycerides synthesis through ubiquintination pathway in MAC-T cells
Mengxue Hu, Lily Liu
https://doi.org/10.7717/peerj.16611 PubMed 38144203
December 14, 2023
Chargaff’s second parity rule lies at the origin of additive genetic interactions in quantitative traits to make omnigenic selection possible
Bakhyt T. Matkarimov, Murat K. Saparbaev
https://doi.org/10.7717/peerj.16671 PubMed 38107580
December 11, 2023
A deep learning method for drug-target affinity prediction based on sequence interaction information mining
Mingjian Jiang, Yunchang Shao, Yuanyuan Zhang, Wei Zhou, Shunpeng Pang
https://doi.org/10.7717/peerj.16625 PubMed 38099302
December 1, 2023
Ground beetle assemblages inhabiting various age classes of Norway spruce stands in north-eastern Poland
Mariusz Nietupski, Agnieszka Kosewska, Emilia Ludwiczak
https://doi.org/10.7717/peerj.16502 PubMed 38054021
November 28, 2023
Intraspecific body size variation and allometry of genitalia in the orb-web spider—Argiope lobata
Chathuranga Dharmarathne, Donald James McLean, Marie E. Herberstein, Jutta M. Schneider
https://doi.org/10.7717/peerj.16413 PubMed 38047024
November 28, 2023
Long-range RNA structures in the human transcriptome beyond evolutionarily conserved regions
Sergey Margasyuk, Lev Zavileyskiy, Changchang Cao, Dmitri Pervouchine
https://doi.org/10.7717/peerj.16414 PubMed 38047033
November 27, 2023
kakapo: easy extraction and annotation of genes from raw RNA-seq reads
Karolis Ramanauskas, Boris Igić
https://doi.org/10.7717/peerj.16456 PubMed 38034874
November 27, 2023
Functional response of Neoseiulus californicus (Acari: Phytoseiidae) to Tetranychus urticae (Acari: Tetranychidae) at different temperatures
Maryam Mumtaz, Vattakandy Jasin Rahman, Tahseen Saba, Tingting Huang, Yuxin Zhang, Chunxian Jiang, Qing Li
https://doi.org/10.7717/peerj.16461 PubMed 38034871
November 15, 2023
Seq2science: an end-to-end workflow for functional genomics analysis
Maarten van der Sande, Siebren Frölich, Tilman Schäfers, Jos G.A. Smits, Rebecca R. Snabel, Sybren Rinzema, Simon J. van Heeringen
https://doi.org/10.7717/peerj.16380 PubMed 38025697
November 10, 2023
Critical re-examination of known purported fossil Bombycoidea (Lepidoptera)
Maria Heikkilä, Joël Minet, Andreas Zwick, Anna Hundsdoerfer, Rodolphe Rougerie, Ian J. Kitching
https://doi.org/10.7717/peerj.16049 PubMed 37965290
November 3, 2023
Comparative analysis of shotgun metagenomics and 16S rDNA sequencing of gut microbiota in migratory seagulls
Feng Liao, Yilan Xia, Wenpeng Gu, Xiaoqing Fu, Bing Yuan
https://doi.org/10.7717/peerj.16394 PubMed 37941936
October 27, 2023
Seroprevalence of five diarrhea-related pathogens in bovine herds of scattered households in Inner Mongolia, China between 2019 and 2022
Mengyuan Xie, Kejia Chen, PingPing Liu, Xiaodan Wang, Yexin Chen, Hewei Shang, Yanru Hao, Peiyuan Gao, Xiuling He, Xiaojing Xu
https://doi.org/10.7717/peerj.16013 PubMed 37908414
October 20, 2023
Validating a re-implementation of an algorithm to integrate transcriptome and ChIP-seq data
Mahmoud Ahmed, Deok Ryong Kim
https://doi.org/10.7717/peerj.16318 PubMed 37876906
October 18, 2023
Contact-independent exposure to Rhodococcus rhodochrous DAP96253 volatiles does not improve the survival rate of Myotis lucifugus (little brown bats) affected by White-nose Syndrome
Sarah Hooper, Sybill Amelon
https://doi.org/10.7717/peerj.15782 PubMed 37868049
October 18, 2023
Sexual dimorphism in skull size and shape of Laticauda colubrina (Serpentes: Elapidae)
Bartosz Borczyk
https://doi.org/10.7717/peerj.16266 PubMed 37868070
October 16, 2023
The transcriptome of the entomopathogenic fungus Culicinomyces clavisporus contains an ortholog of the insecticidal ribotoxin Hirsutellin
Dana Foresman, Aurélien Tartar
https://doi.org/10.7717/peerj.16259 PubMed 37868071
October 13, 2023
Theoretical study of ArcB and its dimerization, interaction with anaerobic metabolites, and activation of ArcA
Felipe Padilla-Vaca, Javier de la Mora, Rodolfo García-Contreras, Jorge Humberto Ramírez-Prado, Marcos Vicente-Gómez, Francisco Vargas-Gasca, Fernando Anaya-Velázquez, Itzel Páramo-Pérez, Ángeles Rangel-Serrano, Patricia Cuéllar-Mata, Naurú Idalia Vargas-Maya, Bernardo Franco
https://doi.org/10.7717/peerj.16309 PubMed 37849831
October 9, 2023
Use of micro and macroalgae extracts for the control of vector mosquitoes
Ozge Tufan-Cetin, Huseyin Cetin
https://doi.org/10.7717/peerj.16187 PubMed 37842039
October 3, 2023
The complete mitochondrial genome and gene rearrangements in a gall wasp species, Dryocosmus liui (Hymenoptera: Cynipoidea: Cynipidae)
Cheng-Yuan Su, Dao-Hong Zhu, Yoshihisa Abe, Tatsuya Ide, Zhiwei Liu
https://doi.org/10.7717/peerj.15865 PubMed 37810770
October 2, 2023
Epiperipatus puri sp. nov., a new velvet worm from Atlantic Forest in Southeastern Brazil (Onychophora, Peripatidae)
Cristiano Sampaio Costa, Amanda Cruz Mendes, Alessandro Ponce de Leão Giupponi
https://doi.org/10.7717/peerj.15384 PubMed 37810772
September 26, 2023
TLR7 promotes skin inflammation via activating NFκB-mTORC1 axis in rosacea
Yaqun Huang, Da Liu, Mengting Chen, San Xu, Qinqin Peng, Yan Zhu, Juan Long, Tangxiele Liu, Zhili Deng, Hongfu Xie, Ji Li, Fangfen Liu, Wenqin Xiao
https://doi.org/10.7717/peerj.15976 PubMed 37780385
September 25, 2023
Comparative analysis of codon usage patterns and phylogenetic implications of five mitochondrial genomes of the genus Japanagallia Ishihara, 1955 (Hemiptera, Cicadellidae, Megophthalminae)
Min Li, Jiajia Wang, Renhuai Dai, Guy Smagghe, Xianyi Wang, Siying You
https://doi.org/10.7717/peerj.16058 PubMed 37780390
September 19, 2023
PHFinder: assisted detection of point heteroplasmy in Sanger sequencing chromatograms
Marcos Suárez Menéndez, Vania E. Rivera-León, Jooke Robbins, Martine Berube, Per J. Palsbøll
https://doi.org/10.7717/peerj.16028 PubMed 37744223
September 8, 2023
Dieting alleviates hyperuricemia and organ injuries in uricase-deficient rats via down-regulating cell cycle pathway
Yun Yu, Xulian Wan, Dan Li, Yalin Qi, Ning Li, Guangyun Luo, Hua Yin, Lei Wang, Wan Qin, Yongkun Li, Lvyu Li, Weigang Duan
https://doi.org/10.7717/peerj.15999 PubMed 37701826
September 7, 2023
Head lice: impact of COVID-19 and slow recovery of prevalence in Cambridgeshire, UK
Ian F. Burgess, Elizabeth R. Brunton, Mark N. Burgess
https://doi.org/10.7717/peerj.16001 PubMed 37701830
August 28, 2023
Antimicrobial resistance and molecular typing of Staphylococcus aureus isolates from raw milk in Hunan Province
Keming Ning, Rushun Zhou, Manxiang Li
https://doi.org/10.7717/peerj.15847 PubMed 37663302
August 22, 2023
Comparative genomics of bacteria from amphibian skin associated with inhibition of an amphibian fungal pathogen, Batrachochytrium dendrobatidis
Noah Wax, Jenifer B. Walke, David C. Haak, Lisa K. Belden
https://doi.org/10.7717/peerj.15714 PubMed 37637170
August 16, 2023
LIDER: cell embedding based deep neural network classifier for supervised cell type identification
Yachen Tang, Xuefeng Li, Mingguang Shi
https://doi.org/10.7717/peerj.15862 PubMed 37601262
August 15, 2023
Evaluation of a biosecurity survey approach for contamination by Chlamydia pecorum in koala rehabilitation, field capture, and captive settings
Andrea Casteriano, Astrid Robin Van Aggelen, Shali Fischer, Cheyne Flanagan, Caroline Marschner, Hannah Nugent, Wilhelmina Huston, Damien P. Higgins
https://doi.org/10.7717/peerj.15842 PubMed 37601255
August 14, 2023
Sex-specific differences in symbiotic microorganisms associated with an invasive mealybug (Phenacoccus solenopsis Tinsley) based on 16S ribosomal DNA
Lu Wang, Xia Liu, Yongming Ruan
https://doi.org/10.7717/peerj.15843 PubMed 37601250
August 8, 2023
Data-specific substitution models improve protein-based phylogenetics
João M. Brazão, Peter G. Foster, Cymon J. Cox
https://doi.org/10.7717/peerj.15716 PubMed 37576497
July 21, 2023
Protein family neighborhood analyzer—ProFaNA
Bartosz Baranowski, Krzysztof Pawłowski
https://doi.org/10.7717/peerj.15715 PubMed 37492397
June 9, 2023
Honey bees and bumble bees occupying the same landscape have distinct gut microbiomes and amplicon sequence variant-level responses to infections
Navolle Amiri, Mia M. Keady, Haw Chuan Lim
https://doi.org/10.7717/peerj.15501 PubMed 37312881
June 7, 2023
Alterations in gene expressions of Caco-2 cell responses to LPS and ploy(I:C) stimulation
Ge Qin, Yuanjie Zhao, Yating Gan, Xiaomei Yu, Yifan Zhao, Hui Peng, Shaoming Fang
https://doi.org/10.7717/peerj.15459 PubMed 37304876
June 6, 2023
Bombardiers and assassins: mimetic interactions between unequally defended insects
Shinji Sugiura, Masakazu Hayashi
https://doi.org/10.7717/peerj.15380 PubMed 37304866
May 31, 2023
Ontogenetic progression of individual head size in the larvae of the beetle Trypoxylus dichotomus (Coleoptera: Scarabaeidae): catch-up growth within stages and per-stage growth rate changes across stages
Sugihiko Hoshizaki
https://doi.org/10.7717/peerj.15451 PubMed 37273541
May 18, 2023
Kukri snakes Oligodon Fitzinger, 1826 of the Western Palearctic with the resurrection of Contia transcaspica Nikolsky, 1902 (Reptilia, Squamata, Colubridae)
Justin L. Lee, Platon V. Yushchenko, Konstantin D. Milto, Mahdi Rajabizadeh, Eskandar Rastegar Pouyani, Daniel Jablonski, Rafaqat Masroor, Suranjan Karunarathna, Ashok Kumar Mallik, Princia Dsouza, Nikolai Orlov, Roman Nazarov, Nikolay A. Poyarkov
https://doi.org/10.7717/peerj.15185 PubMed 37220522
April 12, 2023
Comparison of two molecular barcodes for the study of equine strongylid communities with amplicon sequencing
Élise Courtot, Michel Boisseau, Sophie Dhorne-Pollet, Delphine Serreau, Amandine Gesbert, Fabrice Reigner, Marta Basiaga, Tetiana Kuzmina, Jérôme Lluch, Gwenolah Annonay, Claire Kuchly, Irina Diekmann, Jürgen Krücken, Georg von Samson-Himmelstjerna, Nuria Mach, Guillaume Sallé
https://doi.org/10.7717/peerj.15124 PubMed 37070089
March 29, 2023
Atypical ‘long-tailed’ cockroaches arose during Cretaceous in response to angiosperm terrestrial revolution
Xin-Ran Li, Di-Ying Huang
https://doi.org/10.7717/peerj.15067 PubMed 37013144
March 9, 2023
Analysis of Corynebacterium silvaticum genomes from Portugal reveals a single cluster and a clade suggested to produce diphtheria toxin
Marcus Vinicius Canario Viana, José Henrique Galdino, Rodrigo Profeta, Manuela Oliveira, Luís Tavares, Siomar de Castro Soares, Paulo Carneiro, Alice Rebecca Wattam, Vasco Azevedo
https://doi.org/10.7717/peerj.14895 PubMed 36919166
February 23, 2023
Phylogenomics of darkling beetles (Coleoptera: Tenebrionidae) from the Atacama Desert
Lapo Ragionieri, Álvaro Zúñiga-Reinoso, Marcel Bläser, Reinhard Predel
https://doi.org/10.7717/peerj.14848 PubMed 36855434
January 13, 2023
Corrosion-influencing microorganisms in petroliferous regions on a global scale: systematic review, analysis, and scientific synthesis of 16S amplicon metagenomic studies
Joyce Dutra, Rosimeire Gomes, Glen Jasper Yupanqui García, Danitza Xiomara Romero-Cale, Mariana Santos Cardoso, Vinicius Waldow, Claudia Groposo, Rubens N. Akamine, Maira Sousa, Henrique Figueiredo, Vasco Azevedo, Aristóteles Góes-Neto
https://doi.org/10.7717/peerj.14642 PubMed 36655046
January 12, 2023
Microbial community composition and function in an urban waterway with combined sewer overflows before and after implementation of a stormwater storage pipe
Kazuaki Matsui, Takeshi Miki
https://doi.org/10.7717/peerj.14684 PubMed 36650829
January 12, 2023
Arsenic and mercury tolerant rhizobacteria that can improve phytoremediation of heavy metal contaminated soils
Daniel Rojas-Solis, John Larsen, Roberto Lindig-Cisneros
https://doi.org/10.7717/peerj.14697 PubMed 36650835
January 6, 2023
On the origin of mitochondria: a multilayer network approach
Dérick Gabriel F. Borges, Daniel S. Carvalho, Gilberto C. Bomfim, Pablo Ivan P. Ramos, Jerzy Brzozowski, Aristóteles Góes-Neto, Roberto F. S. Andrade, Charbel El-Hani
https://doi.org/10.7717/peerj.14571 PubMed 36632145
December 22, 2022
Evolutionary analysis of endogenous intronic retroviruses in primates reveals an enrichment in transcription binding sites associated with key regulatory processes
Melissa Calero-Layana, Carmen López-Cruz, Agustín Ocaña, Eduardo Tejera, Vinicio Armijos-Jaramillo
https://doi.org/10.7717/peerj.14431 PubMed 36575684
December 21, 2022
Evaluation of primers for the detection of deadwood-inhabiting archaea via amplicon sequencing
Julia Moll, Björn Hoppe
https://doi.org/10.7717/peerj.14567 PubMed 36573238
December 6, 2022
Multi-dimensional feature recognition model based on capsule network for ubiquitination site prediction
Weimin Li, Jie Wang, Yin Luo, Tsigabu Teame Bezabih
https://doi.org/10.7717/peerj.14427 PubMed 36523471
November 17, 2022
Extending the vibroscape to agroecosystems: investigating the influence of abiotic factors and monitoring insect vibrational signaling
Imane Akassou, Livia Zapponi, Vincenzo Verrastro, Marco Ciolli, Valerio Mazzoni
https://doi.org/10.7717/peerj.14143 PubMed 36415862
October 28, 2022
A standardised low-cost membrane blood-feeder for Aedes aegypti made using common laboratory materials
Peter A. Faber, Ashritha J.A.P.S. Dorai, Steven L. Chown
https://doi.org/10.7717/peerj.14247 PubMed 36325181
October 28, 2022
Luminescent characteristics and mitochondrial COI barcodes of nine cohabitated Taiwanese fireflies
King-Siang Goh, Liang-Jong Wang, Jing-Han Ni, Tzi-Yuan Wang
https://doi.org/10.7717/peerj.14195 PubMed 36325176
October 25, 2022
2FAST2Q: a general-purpose sequence search and counting program for FASTQ files
Afonso M. Bravo, Athanasios Typas, Jan-Willem Veening
https://doi.org/10.7717/peerj.14041 PubMed 36312750
October 24, 2022
Pathogenic strains of Shewanella putrefaciens contain plasmids that are absent in the probiotic strain Pdp11
Marta Domínguez-Maqueda, Olivia Pérez-Gómez, Ana Grande-Pérez, Consuelo Esteve, Pedro Seoane, Silvana T. Tapia-Paniagua, Maria Carmen Balebona, Miguel Angel Moriñigo
https://doi.org/10.7717/peerj.14248 PubMed 36312754
October 6, 2022
The cloacal microbiome of a cavity-nesting raptor, the lesser kestrel (Falco naumanni)
Alessandra Costanzo, Roberto Ambrosini, Andrea Franzetti, Andrea Romano, Jacopo G. Cecere, Michelangelo Morganti, Diego Rubolini, Isabella Gandolfi
https://doi.org/10.7717/peerj.13927 PubMed 36221261
September 28, 2022
Description and complete mitochondrial genome of Atkinsoniella zizhongi sp. nov. (Hemiptera: Cicadellidae: Cicadellinae) from China and its phylogenetic implications
Yan Jiang, Hao-Xi Li, Xiao-Fei Yu, Mao-Fa Yang
https://doi.org/10.7717/peerj.14026 PubMed 36193437
September 28, 2022
Do pheromone traps help to reduce new attacks of Ips typographus at the local scale after a sanitary cut?
Alexandre Kuhn, Louis Hautier, Gilles San Martin
https://doi.org/10.7717/peerj.14093 PubMed 36193434
September 28, 2022
A novel alkane monooxygenase (alkB) clade revealed by massive genomic survey and its dissemination association with IS elements
Shaojing Wang, Guoqiang Li, Zitong Liao, Tongtong Liu, Ting Ma
https://doi.org/10.7717/peerj.14147 PubMed 36193440
September 21, 2022
Antimicrobial resistance among Streptococcus equi subspecies zooepidemicus and Rhodococcus equi isolated from equine specimens submitted to a diagnostic laboratory in Kentucky, USA
Jennifer Lord, Craig Carter, Jacqueline Smith, Stephan Locke, Erica Phillips, Agricola Odoi
https://doi.org/10.7717/peerj.13682 PubMed 36164606
September 13, 2022
High temperature mortality of Wolbachia impacts the sex ratio of the parasitoid Ooencyrtus mirus (Hymenoptera: Encyrtidae)
Nancy R. Power, Paul F. Rugman-Jones, Richard Stouthamer, Fatemeh Ganjisaffar, Thomas M. Perring
https://doi.org/10.7717/peerj.13912 PubMed 36117539
September 2, 2022
Satellite remote sensing of environmental variables can predict acoustic activity of an orthopteran assemblage
Diego A. Gomez-Morales, Orlando Acevedo-Charry
https://doi.org/10.7717/peerj.13969 PubMed 36071828
August 31, 2022
Non-synonymous to synonymous substitutions suggest that orthologs tend to keep their functions, while paralogs are a source of functional novelty
Juan M. Escorcia-Rodríguez, Mario Esposito, Julio A. Freyre-González, Gabriel Moreno-Hagelsieb
https://doi.org/10.7717/peerj.13843 PubMed 36065404
August 30, 2022
Be aware of the allele-specific bias and compositional effects in multi-template PCR
Ilia Korvigo, Anna A. Igolkina, Arina A. Kichko, Tatiana Aksenova, Evgeny E. Andronov
https://doi.org/10.7717/peerj.13888 PubMed 36061756
August 16, 2022
Have female twisted-wing parasites (Insecta: Strepsiptera) evolved tolerance traits as response to traumatic penetration?
Kenny Jandausch, Jan Michels, Alexander Kovalev, Stanislav N. Gorb, Thomas van de Kamp, Rolf Georg Beutel, Oliver Niehuis, Hans Pohl
https://doi.org/10.7717/peerj.13655 PubMed 35990910
August 16, 2022
Freshwater macrophytes harbor viruses representing all five major phyla of the RNA viral kingdom Orthornavirae
Karyna Rosario, Noémi Van Bogaert, Natalia B. López-Figueroa, Haris Paliogiannis, Mason Kerr, Mya Breitbart
https://doi.org/10.7717/peerj.13875 PubMed 35990902
August 11, 2022
Prevalence, type of infections and comparative analysis of detection techniques of intestinal parasites in the province of Belgarn, Saudi Arabia
Abdulrahman S. Alqarni, Majed H. Wakid, Hattan S. Gattan
https://doi.org/10.7717/peerj.13889 PubMed 35975233
August 11, 2022
Maintenance of specificity in sympatric host-specific fig/wasp pollination mutualisms
Hua Xie, Pei Yang, Yan Xia, Finn Kjellberg, Clive T. Darwell, Zong-Bo Li
https://doi.org/10.7717/peerj.13897 PubMed 35975234
August 10, 2022
Evaluation of colonization and mutualistic endophytic symbiosis of Escherichia coli with tomato and Bermuda grass seedlings
Satish K. Verma, Qiang Chen, James Francis White
https://doi.org/10.7717/peerj.13879 PubMed 35971430
August 9, 2022
The use of synthetic agonists of quorum sensing N- acyl homoserine lactone pathway improves the bioleaching ability in Acidithiobacillus and Pseudomonas bacteria
Juan Carlos Caicedo, Sonia Villamizar, Giampaolo Orlandoni
https://doi.org/10.7717/peerj.13801 PubMed 35966926
July 25, 2022
The immunomodulatory potential of phage therapy to treat acne: a review on bacterial lysis and immunomodulation
Juan Farfán, John M. Gonzalez, Martha Vives
https://doi.org/10.7717/peerj.13553 PubMed 35910763
July 19, 2022
Engineering a tunable bicistronic TetR autoregulation expression system in Gluconobacter oxydans
Monica Bertucci, Ky Ariano, Meg Zumsteg, Paul Schweiger
https://doi.org/10.7717/peerj.13639 PubMed 35873911
July 14, 2022
Acoustic and vibrational signaling in true katydid Nesoecia nigrispina: three means of sound production in one species
Olga S. Korsunovskaya, Rustem D. Zhantiev
https://doi.org/10.7717/peerj.13749 PubMed 35855433
July 13, 2022
Postembryonic development of the tracheal system of beetles in the context of aptery and adaptations towards an arid environment
Marcin Raś, Benjamin Wipfler, Tim Dannenfeld, Dariusz Iwan
https://doi.org/10.7717/peerj.13378 PubMed 35855904
June 23, 2022
Intra- and interspecific competition resulting from spatial coexistence among larvae of closely-related caddisflies from the genus Hydropsyche
Mariusz Tszydel, Dagmara Błońska
https://doi.org/10.7717/peerj.13576 PubMed 35765593
June 21, 2022
Adapting mark-recapture methods to estimating accepted species-level diversity: a case study with terrestrial Gastropoda
Gary Rosenberg, Kurt Auffenberg, Ruud Bank, Rüdiger Bieler, Philippe Bouchet, David Herbert, Frank Köhler, Thomas A. Neubauer, Eike Neubert, Barna Páll-Gergely, Ira Richling, Simon Schneider
https://doi.org/10.7717/peerj.13139 PubMed 35757168
June 21, 2022
Effects of soft rock on soil properties and bacterial community in Mu Us Sandy Land, China
Zhen Guo, Wei Hui, Juan Li, Chenxi Yang, Haiou Zhang, Huanyuan Wang
https://doi.org/10.7717/peerj.13561 PubMed 35757169
June 7, 2022
Cuticular hydrocarbons as caste-linked cues in Neotropical swarm-founding wasps
Rafael Carvalho da Silva, Amanda Prato, Ivelize Tannure-Nascimento, Cintia Akemi Oi, Tom Wenseleers, Fabio Nascimento
https://doi.org/10.7717/peerj.13571 PubMed 35694385
May 27, 2022
Sexual dimorphism in shell size of the land snail Leptopoma perlucidum (Caenogastropoda: Cyclophoridae)
Chee-Chean Phung, Ming-Huei Choo, Thor-Seng Liew
https://doi.org/10.7717/peerj.13501 PubMed 35651743
May 19, 2022
Identification of vaccine targets & design of vaccine against SARS-CoV-2 coronavirus using computational and deep learning-based approaches
Bilal Ahmed Abbasi, Devansh Saraf, Trapti Sharma, Robin Sinha, Shachee Singh, Shriya Sood, Pranjay Gupta, Akshat Gupta, Kartik Mishra, Priya Kumari, Kamal Rawal
https://doi.org/10.7717/peerj.13380 PubMed 35611169
May 13, 2022
Anatomical indicators of Eucalyptus spp. resistance to Glycaspis brimblecombei (Hemiptera: Aphalaridae)
Fernando Henrique Moreno de Oliveira Del Piero, Carlos Frederico Wilcken, Maurício Magalhães Domingues, Ana Laura Favoreto, Roberto Antonio Rodella, Alexandre Igor Azevedo Pereira, Wiane Meloni Silva, José Eduardo Serrão, José Cola Zanuncio
https://doi.org/10.7717/peerj.13346 PubMed 35586137
May 12, 2022
Non-destructive monitoring of 3D cell cultures: new technologies and applications
Marilisa Cortesi, Emanuele Giordano
https://doi.org/10.7717/peerj.13338 PubMed 35582620
May 10, 2022
Contrasting patterns from two invasion fronts suggest a niche shift of an invasive predator of native bees
Maria João Verdasca, Luisa Carvalheiro, Jesus Aguirre Gutierrez, José Pedro Granadeiro, Quentin Rome, Sebastien J. Puechmaille, Rui Rebelo, Hugo Rebelo
https://doi.org/10.7717/peerj.13269 PubMed 35573178
May 3, 2022
Climate change influences on the geographic distributional potential of the spotted fever vectors Amblyomma maculatum and Dermacentor andersoni
Abdelghafar Alkishe, A. Townsend Peterson
https://doi.org/10.7717/peerj.13279 PubMed 35529481
April 29, 2022
How beavers affect riverine aquatic macroinvertebrates: a review
Susan Washko, Nigel Willby, Alan Law
https://doi.org/10.7717/peerj.13180 PubMed 35509966
April 25, 2022
A DNA barcode survey of insect biodiversity in Pakistan
Muhammad Ashfaq, Arif M. Khan, Akhtar Rasool, Saleem Akhtar, Naila Nazir, Nazeer Ahmed, Farkhanda Manzoor, Jayme Sones, Kate Perez, Ghulam Sarwar, Azhar A. Khan, Muhammad Akhter, Shafqat Saeed, Riffat Sultana, Hafiz Muhammad Tahir, Muhammad A. Rafi, Romana Iftikhar, Muhammad Tayyib Naseem, Mariyam Masood, Muhammad Tufail, Santosh Kumar, Sabila Afzal, Jaclyn McKeown, Ahmed Ali Samejo, Imran Khaliq, Michelle L. D’Souza, Shahid Mansoor, Paul D. N. Hebert
https://doi.org/10.7717/peerj.13267 PubMed 35497186
April 22, 2022
Species limits and recent diversification of Cerradomys (Sigmodontinae: Oryzomyini) during the Pleistocene
Camilla B. Di-Nizo, Elkin Y. Suárez-Villota, Maria José J. Silva
https://doi.org/10.7717/peerj.13011 PubMed 35480563
April 18, 2022
Five new mitogenomes sequences of Calidridine sandpipers (Aves: Charadriiformes) and comparative mitogenomics of genus Calidris
Wan Chen, Keer Miao, Junqi Wang, Hao Wang, Wan Sun, Sijia Yuan, Site Luo, Chaochao Hu, Qing Chang
https://doi.org/10.7717/peerj.13268 PubMed 35462767
April 18, 2022
Mitogenomics and phylogenetics of twelve species of African Saturniidae (Lepidoptera)
Zwannda Nethavhani, Rieze Straeuli, Kayleigh Hiscock, Ruan Veldtman, Andrew Morton, Rolf G. Oberprieler, Barbara van Asch
https://doi.org/10.7717/peerj.13275 PubMed 35462770
March 30, 2022
Continuous mutation of SARS-CoV-2 during migration via three routes at the beginning of the pandemic
Tomokazu Konishi
https://doi.org/10.7717/peerj.12681 PubMed 35378929
March 25, 2022
A longitudinal study of risk factors associated with white spot disease occurrence in marine shrimp farming in Rayong, Thailand
Sompit Yaemkasem, Visanu Boonyawiwat, Manakorn Sukmak, Sukanya Thongratsakul, Chaithep Poolkhet
https://doi.org/10.7717/peerj.13182 PubMed 35356468
March 24, 2022
Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study
Yami Ommar Arizmendi Cárdenas, Samuel Neuenschwander, Anna-Sapfo Malaspinas
https://doi.org/10.7717/peerj.12784 PubMed 35356467
March 23, 2022
Exploring the genome of Lactobacillaceae spp. Sy-1 isolated from Heterotrigona itama honey
Syariffah Nuratiqah Syed Yaacob, Fahrul Huyop, Mailin Misson, Roswanira Abdul Wahab, Nurul Huda
https://doi.org/10.7717/peerj.13053 PubMed 35345581
March 18, 2022
High-performance pipeline for MutMap and QTL-seq
Yu Sugihara, Lester Young, Hiroki Yaegashi, Satoshi Natsume, Daniel J. Shea, Hiroki Takagi, Helen Booker, Hideki Innan, Ryohei Terauchi, Akira Abe
https://doi.org/10.7717/peerj.13170 PubMed 35321412
March 9, 2022
Environmental enrichment changes rabbits’ behavior, serum hormone level and further affects cecal microbiota
Yang Feng, Huimei Fan, Xue Liang, Xiaofeng Wang, Guoyan Gao, Shuangbao Gun
https://doi.org/10.7717/peerj.13068 PubMed 35287345
March 1, 2022
Lactococcus lactis secreting phage lysins as a potential antimicrobial against multi-drug resistant Staphylococcus aureus
Carumathy Chandran, Hong Yun Tham, Raha Abdul Rahim, Swee Hua Erin Lim, Khatijah Yusoff, Adelene Ai-Lian Song
https://doi.org/10.7717/peerj.12648 PubMed 35251775
February 23, 2022
Microbial biogeography of the wombat gastrointestinal tract
Raphael Eisenhofer, Erin D’Agnese, David Taggart, Scott Carver, Beth Penrose
https://doi.org/10.7717/peerj.12982 PubMed 35228910
February 16, 2022
Evidence of episodic positive selection in Corynebacterium diphtheriae complex of species and its implementations in identification of drug and vaccine targets
Marcus Vinicius Canário Viana, Rodrigo Profeta, Janaína Canário Cerqueira, Alice Rebecca Wattam, Debmalya Barh, Artur Silva, Vasco Azevedo
https://doi.org/10.7717/peerj.12662 PubMed 35190783
February 8, 2022
Description of a new and widely distributed species of Bathypathes (Cnidaria: Anthozoa: Antipatharia: Schizopathidae) previously misidentified as Bathypathes alternata Brook, 1889
Tina N. Molodtsova, Dennis M. Opresko, Daniel Wagner
https://doi.org/10.7717/peerj.12638 PubMed 35186449
January 24, 2022
Impervious surface and local abiotic conditions influence arthropod communities within urban greenspaces
Garrett M. Maher, Graham A. Johnson, Justin D. Burdine
https://doi.org/10.7717/peerj.12818 PubMed 35127289
January 24, 2022
Retrogene survival is not impacted by linkage relationships
Johnathan Lo, Heath Blackmon
https://doi.org/10.7717/peerj.12822 PubMed 35127291
January 21, 2022
Measuring mass: variation among 3,161 species of Canadian Coleoptera and the prospects of a mass registry for all insects
Jingchan Hu, Mikko Pentinsaari, Paul D.N. Hebert
https://doi.org/10.7717/peerj.12799 PubMed 35116199
January 19, 2022
DnoisE: distance denoising by entropy. An open-source parallelizable alternative for denoising sequence datasets
Adrià Antich, Creu Palacín, Xavier Turon, Owen S. Wangensteen
https://doi.org/10.7717/peerj.12758 PubMed 35111399
December 24, 2021
Three new species of Byrsopteryx Flint microcaddisflies from Peru (Insecta: Trichoptera) including DNA-based larval associations
Allan P.M. Santos, Daniela Maeda Takiya
https://doi.org/10.7717/peerj.12645 PubMed 35036141
December 23, 2021
A journey through the Corynebacterium pseudotuberculosis proteome promotes insights into its functional genome
Wanderson Marques da Silva, Nubia Seyffert, Artur Silva, Vasco Azevedo
https://doi.org/10.7717/peerj.12456 PubMed 35036114
December 23, 2021
Reinvestigating the phylogeny of Myriapoda with more extensive taxon sampling and novel genetic perspective
Jiajia Wang, Yu Bai, Haifeng Zhao, Ruinan Mu, Yan Dong
https://doi.org/10.7717/peerj.12691 PubMed 35036164
December 17, 2021
Novel visual analytics approach for chromosome territory analysis
Magdalena A. Tkacz, Kornel Chromiński, Dominika Idziak-Helmcke, Ewa Robaszkiewicz
https://doi.org/10.7717/peerj.12661 PubMed 35003937
December 14, 2021
The characteristics and roles of antimicrobial peptides as potential treatment for antibiotic-resistant pathogens: a review
Nurul Hana Zainal Baharin, Nur Fadhilah Khairil Mokhtar, Mohd Nasir Mohd Desa, Banulata Gopalsamy, Nor Nadiha Mohd Zaki, Mohd Hafis Yuswan, AbdulRahman Muthanna, Nurul Diana Dzaraly, Sahar Abbasiliasi, Amalia Mohd Hashim, Muhamad Shirwan Abdullah Sani, Shuhaimi Mustafa
https://doi.org/10.7717/peerj.12193 PubMed 35003909
December 14, 2021
Local ancestry prediction with PyLAE
Nikita Moshkov, Aleksandr Smetanin, Tatiana V. Tatarinova
https://doi.org/10.7717/peerj.12502 PubMed 35003914
November 29, 2021
Molecular identification and diversity of adult arthropod carrion community collected from pig and sheep carcasses within the same locality during different stages of decomposition in the KwaZulu-Natal province of South Africa
Danisile Tembe, Mokgadi Pulane Malatji, Samson Mukaratirwa
https://doi.org/10.7717/peerj.12500 PubMed 34909274
November 26, 2021
treedata.table: a wrapper for data.table that enables fast manipulation of large phylogenetic trees matched to data
Cristian Román Palacios, April Wright, Josef Uyeda
https://doi.org/10.7717/peerj.12450 PubMed 34900417
November 24, 2021
Characterization of the morphology and complete mitochondrial genomes of Eupteryx minusula and Eupteryx gracilirama (Hemiptera: Cicadellidae: Typhlocybinae) from Karst area, Southwest China
Zhouwei Yuan, Kangning Xiong, Ni Zhang, Can Li, Yuehua Song
https://doi.org/10.7717/peerj.12501 PubMed 34900426
November 22, 2021
Atypical functioning of female genitalia explains monandry in a butterfly
David Xochipiltecatl, Joaquín Baixeras, Carlos R. Cordero
https://doi.org/10.7717/peerj.12499 PubMed 34900425
November 16, 2021
Exotic predators are not better biocontrol agents: the harlequin ladybird is not the most voracious in Mexico
Morelia Camacho-Cervantes, Wendy Mendoza-Arroyo, Daniela Arellano-Sánchez, Ek del-Val
https://doi.org/10.7717/peerj.12503 PubMed 34820207
November 10, 2021
Polygamous breeding system identified in the distylous genus Psychotria: P. manillensis in the Ryukyu archipelago, Japan
Kenta Watanabe, Akira Shimizu, Takashi Sugawara
https://doi.org/10.7717/peerj.12318 PubMed 34824905
November 5, 2021
Evolutionary history of the vertebrate Piwi gene family
Javier Gutierrez, Roy Platt, Juan C. Opazo, David A. Ray, Federico Hoffmann, Michael Vandewege
https://doi.org/10.7717/peerj.12451 PubMed 34760405
November 4, 2021
Courtship behavior and identification of a sex pheromone in Ibalia leucospoides (Hymenoptera: Ibaliidae), a larval parasitoid of Sirex noctilio (Hymenoptera: Siricidae)
Hajar Faal, Peter J. Silk, Peter D. Mayo, Stephen A. Teale
https://doi.org/10.7717/peerj.12266 PubMed 34760353
November 2, 2021
Adult body size measurement redundancies in Osmia lignaria and Megachile rotundata (Hymenoptera: Megachilidae)
Lindsie M. McCabe, Natalie K. Boyle, Morgan B. Scalici, Theresa L. Pitts-Singer
https://doi.org/10.7717/peerj.12344 PubMed 34760367
October 29, 2021
Cryptic diversity in the subgenus Oxyphortica (Diptera, Drosophilidae, Stegana)
Ya-Lian Wang, Nan-Nan Wang, Yuan Zhang, Shun-Chern Tsaur, Hong-Wei Chen
https://doi.org/10.7717/peerj.12347 PubMed 34760370
October 26, 2021
Removal or component reversal of local geomagnetic field affects foraging orientation preference in migratory insect brown planthopper Nilaparvata lugens
Yingchao Zhang, Weidong Pan
https://doi.org/10.7717/peerj.12351 PubMed 34760372
October 26, 2021
Identification of genes and gene expression associated with dispersal capacity in the mountain pine beetle, Dendroctonus ponderosae Hopkins (Coleoptera: Curculionidae)
Victor A. Shegelski, Maya L. Evenden, Dezene P.W. Huber, Felix A.H. Sperling
https://doi.org/10.7717/peerj.12382 PubMed 34754626
September 30, 2021
Identifying optimal bioinformatics protocols for aerosol microbial community data
Katie Miaow, Donnabella Lacap-Bugler, Hannah L. Buckley
https://doi.org/10.7717/peerj.12065 PubMed 34703658
September 27, 2021
MINTIA: a metagenomic INserT integrated assembly and annotation tool
Philippe Bardou, Sandrine Laguerre, Sarah Maman Haddad, Sabrina Legoueix Rodriguez, Elisabeth Laville, Claire Dumon, Gabrielle Potocki-Veronese, Christophe Klopp
https://doi.org/10.7717/peerj.11885 PubMed 34692239
September 24, 2021
Novel real-time PCR based assays for differentiating fall armyworm strains using four single nucleotide polymorphisms
Ashley E. Tessnow, Todd M. Gilligan, Eric Burkness, Caroline Placidi De Bortoli, Juan Luis Jurat-Fuentes, Patrick Porter, Danielle Sekula, Gregory A. Sword
https://doi.org/10.7717/peerj.12195 PubMed 34631319
September 23, 2021
A predictive model for the ichnological suitability of the Jezero crater, Mars: searching for fossilized traces of life-substrate interactions in the 2020 Rover Mission Landing Site
Andrea Baucon, Carlos Neto de Carvalho, Antonino Briguglio, Michele Piazza, Fabrizio Felletti
https://doi.org/10.7717/peerj.11784 PubMed 34631304
September 20, 2021
A comprehensive review and call for studies on firefly larvae
William B. Riley, Simone Policena Rosa, Luiz Felipe Lima da Silveira
https://doi.org/10.7717/peerj.12121 PubMed 34616609
September 16, 2021
Evidence from the resurrected family Polyrhabdinidae Kamm, 1922 (Apicomplexa: Gregarinomorpha) supports the epimerite, an attachment organelle, as a major eugregarine innovation
Gita G. Paskerova, Tatiana S. Miroliubova, Andrea Valigurová, Jan Janouškovec, Magdaléna Kováčiková, Andrei Diakin, Yuliya Ya. Sokolova, Kirill V. Mikhailov, Vladimir V. Aleoshin, Timur G. Simdyanov
https://doi.org/10.7717/peerj.11912 PubMed 34616591
September 13, 2021
Active behaviour of terrestrial caterpillars on the water surface
Masakazu Hayashi, Shinji Sugiura
https://doi.org/10.7717/peerj.11971 PubMed 34603846
September 9, 2021
Apis andreniformis associated Actinomycetes show antimicrobial activity against black rot pathogen (Xanthomonas campestris pv. campestris)
Yaowanoot Promnuan, Saran Promsai, Wasu Pathom-aree, Sujinan Meelai
https://doi.org/10.7717/peerj.12097 PubMed 34589300
September 2, 2021
Organic soil amendments using vermicomposts under inoculation of N2-fixing bacteria for sustainable rice production
Mehdi Ghadimi, Alireza Sirousmehr, Mohammad Hossein Ansari, Ahmad Ghanbari
https://doi.org/10.7717/peerj.10833 PubMed 34557340
September 2, 2021
Weak spatial-genetic structure in a native invasive, the southern pine beetle (Dendroctonus frontalis), across the eastern United States
Ryan C. Garrick, Ísis C. Arantes, Megan B. Stubbs, Nathan P. Havill
https://doi.org/10.7717/peerj.11947 PubMed 34557344
September 1, 2021
Antimicrobial resistance among Enterobacteriaceae, Staphylococcus aureus, and Pseudomonas spp. isolates from clinical specimens from a hospital in Nairobi, Kenya
Jennifer Lord, Anthony Gikonyo, Amos Miwa, Agricola Odoi
https://doi.org/10.7717/peerj.11958 PubMed 34557345
August 24, 2021
Full-length transcriptome analysis of Spodoptera frugiperda larval brain reveals detoxification genes
Lei Yang, Binglin Xing, Fen Li, Li Kui Wang, Linlin Yuan, Amosi Leonard Mbuji, Zhengqiang Peng, Farag Malhat, Shaoying Wu
https://doi.org/10.7717/peerj.12069 PubMed 34513339
August 23, 2021
StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs
Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo
https://doi.org/10.7717/peerj.11884 PubMed 34513324
August 20, 2021
A molecular phylogeny of the Chinese Sinopoda spiders (Sparassidae, Heteropodinae): implications for taxonomy
He Zhang, Yang Zhong, Yang Zhu, Ingi Agnarsson, Jie Liu
https://doi.org/10.7717/peerj.11775 PubMed 34484980
August 18, 2021
Co-occurrence in ant primary parasitoids: a Camponotus rectangularis colony as host of two eucharitid wasp genera
Gabriela Pérez-Lachaud, Jean-Paul Lachaud
https://doi.org/10.7717/peerj.11949 PubMed 34466288
August 16, 2021
On the use of sequence-quality information in OTU clustering
Robert Müller, Markus Nebel
https://doi.org/10.7717/peerj.11717 PubMed 34458017
August 12, 2021
Development of a multiplex qPCR assay for the simultaneous detection of Mycoplasma bovis, Mycoplasma species, and Acholeplasma laidlawii in milk
Kanika Chauhan, Sharif S. Aly, Terry W. Lehenbauer, Karen H. Tonooka, Kathy Glenn, Paul Rossitto, Maria L. Marco
https://doi.org/10.7717/peerj.11881 PubMed 34447623
August 12, 2021
Comparative survival analyses among captive chimpanzees (Pan troglodytes) in America and Japan
Judy Che-Castaldo, Kristin Havercamp, Koshiro Watanuki, Tetsuro Matsuzawa, Satoshi Hirata, Stephen R. Ross
https://doi.org/10.7717/peerj.11913 PubMed 34447626
August 11, 2021
Preference and effect of gustatory sense on sugar-feeding of fire ants
Waqar Jaleel, Qunchen Li, Qingxing Shi, Lihua LYU
https://doi.org/10.7717/peerj.11943 PubMed 34447630
August 6, 2021
Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies
Jason W. Shapiro, Catherine Putonti
https://doi.org/10.7717/peerj.11950 PubMed 34434663
July 30, 2021
CASPredict: a web service for identifying Cas proteins
Shanshan Yang, Jian Huang, Bifang He
https://doi.org/10.7717/peerj.11887 PubMed 34395100
July 27, 2021
Honey bee (Apis mellifera) colony strength and its effects on pollination and yield in highbush blueberries (Vaccinium corymbosum)
Kennedy Judith Grant, Lisa DeVetter, Andony Melathopoulos
https://doi.org/10.7717/peerj.11634 PubMed 34395063
July 26, 2021
ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences
Dylan Catlett, Kevin Son, Connie Liang
https://doi.org/10.7717/peerj.11865 PubMed 34395092
July 21, 2021
The effects of genetic drift and genomic selection on differentiation and local adaptation of the introduced populations of Aedes albopictus in southern Russia
Evgenii A. Konorov, Vyacheslav Yurchenko, Ivan Patraman, Alexander Lukashev, Nadezhda Oyun
https://doi.org/10.7717/peerj.11776 PubMed 34327056
July 21, 2021
The predatory bug Orius strigicollis shows a preference for egg-laying sites based on plant topography
Chendi Yu, Jun Huang, Xiaoyun Ren, G Mandela Fernández-Grandon, Xiaowei Li, Muhammad Hafeez, Yaobin Lu
https://doi.org/10.7717/peerj.11818 PubMed 34327062
July 16, 2021
Dairy management practices associated with multi-drug resistant fecal commensals and Salmonella in cull cows: a machine learning approach
Pranav S. Pandit, Deniece R. Williams, Paul Rossitto, John M. Adaska, Richard Pereira, Terry W. Lehenbauer, Barbara A. Byrne, Xunde Li, Edward R. Atwill, Sharif S. Aly
https://doi.org/10.7717/peerj.11732 PubMed 34316397
July 15, 2021
Assessing the diversity of whiteflies infesting cassava in Brazil
Cesar A.D. Xavier, Angélica Maria Nogueira, Vinicius Henrique Bello, Luís Fernando Maranho Watanabe, Tarsiane Mara Carneiro Barbosa, Miguel Alves Júnior, Leonardo Barbosa, José E.A. Beserra-Júnior, Alessandra Boari, Renata Calegario, Eduardo Silva Gorayeb, Jaime Honorato Júnior, Gabriel Koch, Gaus Silvestre de Andrade Lima, Cristian Lopes, Raquel Neves de Mello, Késsia Pantoja, Fábio Nascimento Silva, Roberto Ramos Sobrinho, Enilton Nascimento Santana, José Wilson Pereira da Silva, Renate Krause-Sakate, Francisco M. Zerbini
https://doi.org/10.7717/peerj.11741 PubMed 34316398
July 12, 2021
Seasonal variation in the diel activity of a dung beetle assemblage
Jorge M. Lobo, Eva Cuesta
https://doi.org/10.7717/peerj.11786 PubMed 34306833
July 2, 2021
First record of entomopathogenic nematodes from Yucatán State, México and their infectivity capacity against Aedes aegypti
Mariana B. Ávila-López, José Q. García-Maldonado, Héctor Estrada-Medina, David I. Hernández-Mena, Daniel Cerqueda-García, Víctor M. Vidal-Martínez
https://doi.org/10.7717/peerj.11633 PubMed 34249499
June 24, 2021
Using an integrative taxonomic approach to delimit a sibling species, Mycetomoellerius mikromelanos sp. nov. (Formicidae: Attini: Attina)
Cody Raul Cardenas, Amy Rongyan Luo, Tappey H. Jones, Ted R. Schultz, Rachelle M.M. Adams
https://doi.org/10.7717/peerj.11622 PubMed 34221725
June 15, 2021
AlleleShift: an R package to predict and visualize population-level changes in allele frequencies in response to climate change
Roeland Kindt
https://doi.org/10.7717/peerj.11534 PubMed 34178449
June 10, 2021
Relationship between age, category and experience with the soccer referee’s self-efficacy
José López Aguilar, Alfonso Castillo-Rodriguez, José L. Chinchilla-Minguet, Wanesa Onetti-Onetti
https://doi.org/10.7717/peerj.11472 PubMed 34178441
June 1, 2021
Population structure, adaptation and divergence of the meadow spittlebug, Philaenus spumarius (Hemiptera, Aphrophoridae), revealed by genomic and morphological data
Sofia G. Seabra, Ana S.B. Rodrigues, Sara E. Silva, Ana Carina Neto, Francisco Pina-Martins, Eduardo Marabuto, Vinton Thompson, Michael R. Wilson, Selçuk Yurtsever, Antti Halkka, Maria Teresa Rebelo, Paulo A.V. Borges, José A. Quartau, Chris D. Jiggins, Octávio S. Paulo
https://doi.org/10.7717/peerj.11425 PubMed 34131518
May 31, 2021
Teratological changes in postembryos of Eratigena atrica obtained by the application of alternating temperatures on spider embryos
Teresa Napiórkowska, Julita Templin, Paweł Napiórkowski
https://doi.org/10.7717/peerj.11457 PubMed 34131520
May 27, 2021
Bracon wasps for ecological pest control–a laboratory experiment
Jessica Lettmann, Karsten Mody, Tore-Aliocha Kursch-Metz, Nico Blüthgen, Katja Wehner
https://doi.org/10.7717/peerj.11540 PubMed 34123600
May 26, 2021
Key circular RNAs identified in male osteoporosis patients by whole transcriptome sequencing
Haijin Zhang, Xue Song, Zongyan Teng, Sujun Cheng, Weigang Yu, Xiaoyi Yao, Zhiqiang Song, Yina Zhang
https://doi.org/10.7717/peerj.11420 PubMed 34123587
May 25, 2021
Measuring pathway database coverage of the phosphoproteome
Hannah Huckstep, Liam G. Fearnley, Melissa J. Davis
https://doi.org/10.7717/peerj.11298 PubMed 34113485
May 14, 2021
DNA barcoding of Austrian snow scorpionflies (Mecoptera, Boreidae) reveals potential cryptic diversity in Boreus westwoodi
Lukas Zangl, Elisabeth Glatzhofer, Raphael Schmid, Susanne Randolf, Stephan Koblmüller
https://doi.org/10.7717/peerj.11424 PubMed 34040896
May 7, 2021
DNA methylome and transcriptome analysis established a model of four differentially methylated positions (DMPs) as a diagnostic marker in esophageal adenocarcinoma early detection
Weilin Peng, Guangxu Tu, Zhenyu Zhao, Boxue He, Qidong Cai, Pengfei Zhang, Xiong Peng, Shuai Shi, Xiang Wang
https://doi.org/10.7717/peerj.11355 PubMed 34012728
May 6, 2021
First complete mitogenomes of Diamesinae, Orthocladiinae, Prodiamesinae, Tanypodinae (Diptera: Chironomidae) and their implication in phylogenetics
Chen-Guang Zheng, Xiu-Xiu Zhu, Li-Ping Yan, Yuan Yao, Wen-Jun Bu, Xin-Hua Wang, Xiao-Long Lin
https://doi.org/10.7717/peerj.11294 PubMed 33996279
May 6, 2021
Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines
Elham Karimi, Enora Geslain, Arnaud Belcour, Clémence Frioux, Méziane Aïte, Anne Siegel, Erwan Corre, Simon M. Dittami
https://doi.org/10.7717/peerj.11344 PubMed 33996285
April 30, 2021
A Toll-like receptor identified in Gigantidas platifrons and its potential role in the immune recognition of endosymbiotic methane oxidation bacteria
Mengna Li, Hao Chen, Minxiao Wang, Zhaoshan Zhong, Hao Wang, Li Zhou, Huan Zhang, Chaolun Li
https://doi.org/10.7717/peerj.11282 PubMed 33986997
April 27, 2021
Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken
Supapit Wongkuna, Sudeep Ghimire, Surang Chankhamhaengdecha, Tavan Janvilisri, Joy Scaria
https://doi.org/10.7717/peerj.11050 PubMed 33986975
April 27, 2021
Mitogenomics of five Olidiana leafhoppers (Hemiptera: Cicadellidae: Coelidiinae) and their phylogenetic implications
Xianyi Wang, Jiajia Wang, Ren-Huai Dai
https://doi.org/10.7717/peerj.11086 PubMed 33986976
April 27, 2021
Comparison of morphology, development and expression patterns of hsf and hsp11.0 of Cotesia chilonis under normal and high temperature
Fu-Jing He, Feng Zhu, Ming-Xing Lu, Yu-Zhou Du
https://doi.org/10.7717/peerj.11353 PubMed 33987022
April 27, 2021
A Python script to merge Sanger sequences
Cen Chen, Bingguo Lu, Xiaofang Huang, Chuyun Bi, Lili Zhao, Yunzhuo Hu, Xuanyang Chen, Shiqiang Lin, Kai Huang
https://doi.org/10.7717/peerj.11354 PubMed 33987023
April 23, 2021
Porphyromonas gingivalis lipopolysaccharide promotes T-hel per17 cell differentiation by upregulating Delta-like ligand 4 expression on CD14+ monocytes
Chi Zhang, Chenrong Xu, Li Gao, Xiting Li, Chuanjiang Zhao
https://doi.org/10.7717/peerj.11094 PubMed 33981487
April 21, 2021
Fast computational mutation-response scanning of proteins
Julian Echave
https://doi.org/10.7717/peerj.11330 PubMed 33976988
April 12, 2021
scAnt—an open-source platform for the creation of 3D models of arthropods (and other small objects)
Fabian Plum, David Labonte
https://doi.org/10.7717/peerj.11155 PubMed 33954036
April 6, 2021
Defensive behavior of the invasive alien hornet, Vespa velutina, against color, hair and auditory stimuli of potential aggressors
Moon Bo Choi, Eui Jeong Hong, Ohseok Kwon
https://doi.org/10.7717/peerj.11249 PubMed 33868832
April 5, 2021
Honey bees communicate distance via non-linear waggle duration functions
Patrick L. Kohl, Benjamin Rutschmann
https://doi.org/10.7717/peerj.11187 PubMed 33868825
April 2, 2021
16S amplicon sequencing of microbial communities in enriched and non-enriched sediments of non-volcanic hot spring with temperature gradients
Muhammad Yasir, Arooj K. Qureshi, Esam I. Azhar
https://doi.org/10.7717/peerj.10995 PubMed 33859871
March 31, 2021
New alignment-based sequence extraction software (ALiBaSeq) and its utility for deep level phylogenetics
Alexander Knyshov, Eric R.L. Gordon, Christiane Weirauch
https://doi.org/10.7717/peerj.11019 PubMed 33850647
March 15, 2021
Metabolite profiling of endophytic Streptomyces spp. and its antiplasmodial potential
Siti Junaidah Ahmad, Noraziah Mohamad Zin, Noor Wini Mazlan, Syarul Nataqain Baharum, Mohd Shukri Baba, Yee Ling Lau
https://doi.org/10.7717/peerj.10816 PubMed 33777509
March 10, 2021
T cell mediated immunity against influenza H5N1 nucleoprotein, matrix and hemagglutinin derived epitopes in H5N1 survivors and non-H5N1 subjects
Pirom Noisumdaeng, Thaneeya Roytrakul, Jarunee Prasertsopon, Phisanu Pooruk, Hatairat Lerdsamran, Susan Assanasen, Rungrueng Kitphati, Prasert Auewarakul, Pilaipan Puthavathana
https://doi.org/10.7717/peerj.11021 PubMed 33854839
March 10, 2021
A novel predicted ADP-ribosyltransferase-like family conserved in eukaryotic evolution
Zbigniew Wyżewski, Marcin Gradowski, Marianna Krysińska, Małgorzata Dudkiewicz, Krzysztof Pawłowski
https://doi.org/10.7717/peerj.11051 PubMed 33854844
March 9, 2021
The extent of carbapenemase-encoding genes in public genome sequences
Ingmar Janse, Rick Beeloo, Arno Swart, Michael Visser, Leo Schouls, Engeline van Duijkeren, Mark W.J. van Passel
https://doi.org/10.7717/peerj.11000 PubMed 33732552
March 4, 2021
Differential gene expression in a tripartite interaction: Drosophila, Spiroplasma and parasitic wasps
Victor Manuel Higareda Alvear, Mariana Mateos, Diego Cortez, Cecilia Tamborindeguy, Esperanza Martinez-Romero
https://doi.org/10.7717/peerj.11020 PubMed 33717711
March 2, 2021
Taxonomic revision of the Malagasy Aphaenogaster swammerdami group (Hymenoptera: Formicidae)
Sandor Csősz, Ana C. Loss, Brian L. Fisher
https://doi.org/10.7717/peerj.10900 PubMed 33717685
February 23, 2021
Contact toxicity of three insecticides for use in tier I pesticide risk assessments with Megachile rotundata (Hymenoptera: Megachilidae)
Graham R. Ansell, Andrew J. Frewin, Angela E. Gradish, Cynthia D. Scott-Dupree
https://doi.org/10.7717/peerj.10744 PubMed 33665008
February 23, 2021
Behavioral dominance interactions between Nicrophorus orbicollis and N. tomentosus burying beetles (Coleoptera: Silphidae)
Scott D. Schrempf, Kevin W. Burke, Jillian D. Wettlaufer, Paul R. Martin
https://doi.org/10.7717/peerj.10797 PubMed 33665013
February 19, 2021
Higher bee abundance, but not pest abundance, in landscapes with more agriculture on a late-flowering legume crop in tropical smallholder farms
Cassandra Vogel, Timothy L. Chunga, Xiaoxuan Sun, Katja Poveda, Ingolf Steffan-Dewenter
https://doi.org/10.7717/peerj.10732 PubMed 33643704
February 18, 2021
Estimation of parameters for a humidity-dependent compartmental model of the COVID-19 outbreak
Csaba Farkas, David Iclanzan, Boróka Olteán-Péter, Géza Vekov
https://doi.org/10.7717/peerj.10790 PubMed 33643707
February 17, 2021
Expression, purification, crystallization and preliminary X-ray crystallographic studies of a mitochondrial membrane-associated protein Cbs2 from Saccharomyces cerevisiae
Dan Wu, Guanyu Zhu, Yufei Zhang, Yan Wu, Chunlei Zhang, Jiayi Shi, Xiaofeng Zhu, Xiaohuan Yuan
https://doi.org/10.7717/peerj.10901 PubMed 33643713
February 12, 2021
Gut bacterial communities in the freshwater snail Planorbella trivolvis and their modification by a non-herbivorous diet
Zongfu Hu, Qing Tong, Jie Chang, Jianhua Yu, Shuguo Li, Huaxin Niu, Deying Ma
https://doi.org/10.7717/peerj.10716 PubMed 33614273
February 9, 2021
Incomplete lineage sorting and ancient admixture, and speciation without morphological change in ghost-worm cryptic species
José Cerca, Angel G. Rivera-Colón, Mafalda S. Ferreira, Mark Ravinet, Michael D. Nowak, Julian M. Catchen, Torsten H. Struck
https://doi.org/10.7717/peerj.10896 PubMed 33614296
February 5, 2021
Syncmers are more sensitive than minimizers for selecting conserved k‑mers in biological sequences
Robert Edgar
https://doi.org/10.7717/peerj.10805 PubMed 33604186
February 3, 2021
6mA-Pred: identifying DNA N6-methyladenine sites based on deep learning
Qianfei Huang, Wenyang Zhou, Fei Guo, Lei Xu, Lichao Zhang
https://doi.org/10.7717/peerj.10813 PubMed 33604189
January 28, 2021
Monomorium (Hymenoptera: Formicidae) of the Arabian Peninsula with description of two new species, M. heggyi sp. n. and M. khalidi sp. n.
Mostafa R. Sharaf, Amr A. Mohamed, Brendon E. Boudinot, James K. Wetterer, Francisco Hita Garcia, Hathal M. Al Dhafer, Abdulrahman S. Aldawood
https://doi.org/10.7717/peerj.10726 PubMed 33575129
January 22, 2021
ACPT gene is inactivated in mammalian lineages that lack enamel or teeth
Yuan Mu, Xin Huang, Rui Liu, Yulin Gai, Na Liang, Daiqing Yin, Lei Shan, Shixia Xu, Guang Yang
https://doi.org/10.7717/peerj.10219 PubMed 33552707
January 19, 2021
The diverse radiodont fauna from the Marjum Formation of Utah, USA (Cambrian: Drumian)
Stephen Pates, Rudy Lerosey-Aubril, Allison C. Daley, Carlo Kier, Enrico Bonino, Javier Ortega-Hernández
https://doi.org/10.7717/peerj.10509 PubMed 33552709
January 15, 2021
Effective ribosomal RNA depletion for single-cell total RNA-seq by scDASH
Danson S.C. Loi, Lei Yu, Angela R. Wu
https://doi.org/10.7717/peerj.10717 PubMed 33520469
January 13, 2021
The complete mitochondrial genome sequence of Oryctes rhinoceros (Coleoptera: Scarabaeidae) based on long-read nanopore sequencing
Igor Filipović, James P. Hereward, Gordana Rašić, Gregor J. Devine, Michael J. Furlong, Kayvan Etebari
https://doi.org/10.7717/peerj.10552 PubMed 33520439
January 8, 2021
Microbial community structure in aquifers associated with arsenic: analysis of 16S rRNA and arsenite oxidase genes
Prinpida Sonthiphand, Pasunun Rattanaroongrot, Kasarnchon Mek-yong, Kanthida Kusonmano, Chalida Rangsiwutisak, Pichahpuk Uthaipaisanwong, Srilert Chotpantarat, Teerasit Termsaithong
https://doi.org/10.7717/peerj.10653 PubMed 33510973
December 18, 2020
Comparative phosphoproteome analysis to identify candidate phosphoproteins involved in blue light-induced brown film formation in Lentinula edodes
Tingting Song, Yingyue Shen, Qunli Jin, Weilin Feng, Lijun Fan, Weiming Cai
https://doi.org/10.7717/peerj.9859 PubMed 33384895
December 18, 2020
Antimicrobial activity of Streptomyces spp. isolated from Apis dorsata combs against some phytopathogenic bacteria
Yaowanoot Promnuan, Saran Promsai, Sujinan Meelai
https://doi.org/10.7717/peerj.10512 PubMed 33384897
December 18, 2020
Mutational spectra of SARS-CoV-2 isolated from animals
Ahmed Elaswad, Mohamed Fawzy, Shereen Basiouni, Awad A. Shehata
https://doi.org/10.7717/peerj.10609 PubMed 33384909
December 17, 2020
Optimal voluntary and mandatory insect repellent usage and emigration strategies to control the chikungunya outbreak on Reunion Island
Sylvia R.M. Klein, Alex O. Foster, David A. Feagins, Jonathan T. Rowell, Igor V. Erovenko
https://doi.org/10.7717/peerj.10151 PubMed 33362952
December 11, 2020
Portanini (Insecta: Hemiptera: Cicadellidae) from Peru: checklist with new records and descriptions of two new species
Jádila Santos Prando, Clayton Corrêa Gonçalves, Daniela Maeda Takiya
https://doi.org/10.7717/peerj.10222 PubMed 33365204
December 4, 2020
Description of a new genus and species for a common and widespread Amazonian satyrine butterfly (Lepidoptera: Nymphalidae: Satyrinae: Satyrini)
Shinichi Nakahara, Gerardo Lamas, Keith Willmott, Marianne Espeland
https://doi.org/10.7717/peerj.10324 PubMed 33335806
November 30, 2020
Using high-resolution melting to identify Calliphoridae (blowflies) species from Brazil
Pablo Viana Oliveira, Francine Alves Nogueira de Almeida, Magda Delorence Lugon, Karolinni Bianchi Britto, Janyra Oliveira-Costa, Alexandre Rosa Santos, Greiciane Gaburro Paneto
https://doi.org/10.7717/peerj.9680 PubMed 33335803
November 30, 2020
Repurposing FDA-approved phytomedicines, natural products, antivirals and cell protectives against SARS-CoV-2 (COVID-19) RNA-dependent RNA polymerase
Mahmoud Kandeel, Yukio Kitade, Abdullah Almubarak
https://doi.org/10.7717/peerj.10480 PubMed 33335812
November 24, 2020
The pandemic paradox: domestic violence and happiness of women
Wajiha Haq, Syed Hassan Raza, Tahir Mahmood
https://doi.org/10.7717/peerj.10472 PubMed 33282567
November 23, 2020
Sensation of the tiniest kind: the antennal sensilla of the smallest free-living insect Scydosella musawasensis (Coleoptera: Ptiliidae)
Anna V. Diakova, Alexey A. Polilov
https://doi.org/10.7717/peerj.10401 PubMed 33282562
November 16, 2020
Diversity of edible insects in a Natural World Heritage Site of India: entomophagy attitudes and implications for food security in the region
Jayanta Kr Das, Arup Kumar Hazarika, Unmilan Kalita, Subhash Khanna, Tarali Kalita, Sangeeta Choudhury
https://doi.org/10.7717/peerj.10248 PubMed 33240615
November 16, 2020
Clostridium manihotivorum sp. nov., a novel mesophilic anaerobic bacterium that produces cassava pulp-degrading enzymes
Pattsarun Cheawchanlertfa, Sawannee Sutheeworapong, Piroon Jenjaroenpun, Thidathip Wongsurawat, Intawat Nookaew, Supapon Cheevadhanarak, Akihiko Kosugi, Patthra Pason, Rattiya Waeonukul, Khanok Ratanakhanokchai, Chakrit Tachaapaikoon
https://doi.org/10.7717/peerj.10343 PubMed 33240652
November 13, 2020
Identification of L-asparaginases from Streptomyces strains with competitive activity and immunogenic profiles: a bioinformatic approach
Iván González-Torres, Ernesto Perez-Rueda, Zahaed Evangelista-Martínez, Andrés Zárate-Romero, Angélica Moreno-Enríquez, Alejandro Huerta-Saquero
https://doi.org/10.7717/peerj.10276 PubMed 33240625
November 12, 2020
The frequency of combined IFITM3 haplotype involving the reference alleles of both rs12252 and rs34481144 is in line with COVID-19 standardized mortality ratio of ethnic groups in England
Dimitris Nikoloudis, Dimitrios Kountouras, Asimina Hiona
https://doi.org/10.7717/peerj.10402 PubMed 33240681
November 11, 2020
The complete mitochondrial genome of Gyps coprotheres (Aves, Accipitridae, Accipitriformes): phylogenetic analysis of mitogenome among raptors
Emmanuel Oluwasegun Adawaren, Morne Du Plessis, Essa Suleman, Duodane Kindler, Almero O. Oosthuizen, Lillian Mukandiwa, Vinny Naidoo
https://doi.org/10.7717/peerj.10034 PubMed 33240589
November 3, 2020
Cryptosporidium spp. and Giardia duodenalis emissions from humans and animals in the Three Gorges Reservoir in Chongqing, China
Qian Huang, Ling Yang, Bo Li, Huihui Du, Feng Zhao, Lin Han, Qilong Wang, Yunjia Deng, Guosheng Xiao, Dayong Wang
https://doi.org/10.7717/peerj.9985 PubMed 33194374
November 3, 2020
A 22-amino-acid peptide regulates tight junctions through occludin and cell apoptosis
Maoying Zhu, Juan Lu, Jianyun Shen, Lumin Fei, Deyu Chen
https://doi.org/10.7717/peerj.10147 PubMed 33194394
October 30, 2020
Revalidation of morphological characteristics and multiplex PCR for the identification of three congener invasive Liriomyza species (Diptera: Agromyzidae) in China
Ya-Wen Chang, Jing-Yun Chen, Si-Zhu Zheng, Yuan Gao, Yunfang Chen, Yanfeng Deng, Yu-Zhou Du
https://doi.org/10.7717/peerj.10138 PubMed 33194390
October 29, 2020
A review of Euryoryzomys legatus (Rodentia, Sigmodontinae): morphological redescription, cytogenetics, and molecular phylogeny
Mariana D. Guilardi, Pablo Jayat, Marcelo Weksler, James L. Patton, Pablo Edmundo Ortiz, Keila Almeida, Maria José de J. Silva
https://doi.org/10.7717/peerj.9884 PubMed 33194362
October 27, 2020
The size of signal detection and emission organs in a synchronous firefly: sexual dimorphism, allometry and assortative mating
Tania López-Palafox, Rogelio Macías-Ordóñez, Carlos R. Cordero
https://doi.org/10.7717/peerj.10127 PubMed 33194388
October 22, 2020
Gene flow relates to evolutionary divergence among populations at the range margin
Peter Kaňuch, Berrit Kiehl, Anna Cassel-Lundhagen, Ane T. Laugen, Matthew Low, Åsa Berggren
https://doi.org/10.7717/peerj.10036 PubMed 33150060
October 21, 2020
De novo species identification using 16S rRNA gene nanopore sequencing
Inga Leena Angell, Morten Nilsen, Karin C. Lødrup Carlsen, Kai-Håkon Carlsen, Gunilla Hedlin, Christine M. Jonassen, Benjamin Marsland, Björn Nordlund, Eva Maria Rehbinder, Carina Saunders, Håvard Ove Skjerven, Anne Cathrine Staff, Cilla Söderhäll, Riyas Vettukattil, Knut Rudi
https://doi.org/10.7717/peerj.10029 PubMed 33150059
October 20, 2020
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum
Katherine E. Dahlhausen, Guillaume Jospin, David A. Coil, Jonathan A. Eisen, Laetitia G.E. Wilkins
https://doi.org/10.7717/peerj.10177 PubMed 33150080
October 13, 2020
Mitochondrial genomes of twelve species of hyperdiverse Trigonopterus weevils
Raden Pramesa Narakusumo, Alexander Riedel, Joan Pons
https://doi.org/10.7717/peerj.10017 PubMed 33083123
October 6, 2020
The tale of springs and streams: how different aquatic ecosystems impacted the mtDNA population structure of two riffle beetles in the Western Carpathians
Jana Bozáňová, Zuzana Čiamporová Zat’ovičová, Fedor Čiampor Jr, Tomasz Mamos, Michał Grabowski
https://doi.org/10.7717/peerj.10039 PubMed 33083125
October 5, 2020
Fecal microbiota in client-owned obese dogs changes after weight loss with a high-fiber-high-protein diet
Sandra Bermudez Sanchez, Rachel Pilla, Benjamin Sarawichitr, Alessandro Gramenzi, Fulvio Marsilio, Joerg M. Steiner, Jonathan A. Lidbury, Georgiana R.T. Woods, Alexander J. German, Jan S. Suchodolski
https://doi.org/10.7717/peerj.9706 PubMed 33083100
October 2, 2020
The relationship between protein domains and homopeptides in the Plasmodium falciparum proteome
Yue Wang, Hsin Jou Yang, Paul M. Harrison
https://doi.org/10.7717/peerj.9940 PubMed 33062426
October 1, 2020
Dragonflies and damselflies (Odonata) from Puerto Rico: a checklist with notes on distribution and habitat
Alonso Ramírez, Norman Maldonado-Benítez, Ashley Mariani-Ríos, Javier Figueroa-Santiago
https://doi.org/10.7717/peerj.9711 PubMed 33062409
October 1, 2020
Persistent mosquito fogging can be detrimental to non-target invertebrates in an urban tropical forest
Nicole S.M. Lee, Gopalasamy R. Clements, Adeline S.Y. Ting, Zhi H. Wong, Sze H. Yek
https://doi.org/10.7717/peerj.10033 PubMed 33062440
September 25, 2020
Dung beetle species introductions: when an ecosystem service provider transforms into an invasive species
Min R. Pokhrel, Stuart C. Cairns, Nigel R. Andrew
https://doi.org/10.7717/peerj.9872 PubMed 33062417
September 25, 2020
The mechanism and detection of alternative splicing events in circular RNAs
Xiaohan Li, Bing Zhang, Fuyu Li, Kequan Yu, Yunfei Bai
https://doi.org/10.7717/peerj.10032 PubMed 33033662
September 24, 2020
Identification and expression profiles of candidate chemosensory receptors in Histia rhodope (Lepidoptera: Zygaenidae)
Haibo Yang, Junfeng Dong, Ya-Lan Sun, Zhenjie Hu, Qi-Hui Lyu, Dingxu Li
https://doi.org/10.7717/peerj.10035 PubMed 33024644
September 15, 2020
Ground beetles (Coleoptera; Carabidae) as an indicator of ongoing changes in forest habitats due to increased water retention
Emilia Ludwiczak, Mariusz Nietupski, Agnieszka Kosewska
https://doi.org/10.7717/peerj.9815 PubMed 32983638
September 11, 2020
Unexpected diversity in the host-generalist oribatid mite Paraleius leontonychus (Oribatida, Scheloribatidae) phoretic on Palearctic bark beetles
Sylvia Schäffer, Stephan Koblmüller
https://doi.org/10.7717/peerj.9710 PubMed 32974091
September 11, 2020
Methylase-assisted subcloning for high throughput BioBrick assembly
Ichiro Matsumura
https://doi.org/10.7717/peerj.9841 PubMed 32974095
September 11, 2020
ProminTools: shedding light on proteins of unknown function in biomineralization with user friendly tools illustrated using mollusc shell matrix protein sequences
Alastair W. Skeffington, Andreas Donath
https://doi.org/10.7717/peerj.9852 PubMed 32974096
September 10, 2020
Evaluation of different culture media to support in vitro growth and biofilm formation of bacterial vaginosis-associated anaerobes
Aliona S. Rosca, Joana Castro, Nuno Cerca
https://doi.org/10.7717/peerj.9917 PubMed 32974104
September 3, 2020
Two new species of Pseudopimelodus Bleeker, 1858 (Siluriformes: Pseudopimelodidae) from the Magdalena Basin, Colombia
Ana M. Restrepo-Gómez, José D. Rangel-Medrano, Edna J. Márquez, Armando Ortega-Lara
https://doi.org/10.7717/peerj.9723 PubMed 32953260
September 3, 2020
Comprehensive genome analysis of a pangolin-associated Paraburkholderia fungorum provides new insights into its secretion systems and virulence
Ka Yun Tan, Avirup Dutta, Tze King Tan, Ranjeev Hari, Rofina Y. Othman, Siew Woh Choo
https://doi.org/10.7717/peerj.9733 PubMed 32953261
September 2, 2020
Mayfly emergence production and body length response to hydrology in a tropical lowland stream
Pablo E. Gutiérrez-Fonseca, Alonso Ramírez
https://doi.org/10.7717/peerj.9883 PubMed 32953278
August 27, 2020
A new genus Vittaliana belonging to the tribe Opsiini (Hemiptera: Cicadellidae) from India and its molecular phylogeny
Sunil, Naresh M. Meshram, Tahseen Raza Hashmi, Pathour R. Shashank
https://doi.org/10.7717/peerj.9515 PubMed 32913670
August 25, 2020
Reproductive pattern in the solanum mealybug, Phenacoccus solani: A new perspective
Jun Huang, Fuying Zhi, Juan Zhang, Muhammad Hafeez, Xiaowei Li, Jinming Zhang, Zhijun Zhang, Likun Wang, Yaobin Lu
https://doi.org/10.7717/peerj.9734 PubMed 32904449
August 19, 2020
Mutation density changes in SARS-CoV-2 are related to the pandemic stage but to a lesser extent in the dominant strain with mutations in spike and RdRp
Doğa Eskier, Aslı Suner, Gökhan Karakülah, Yavuz Oktay
https://doi.org/10.7717/peerj.9703 PubMed 32879797
August 19, 2020
Six complete mitochondrial genomes of mayflies from three genera of Ephemerellidae (Insecta: Ephemeroptera) with inversion and translocation of trnI rearrangement and their phylogenetic relationships
Xiao-Dong Xu, Yi-Yang Jia, Si-Si Cao, Zi-Yi Zhang, Kenneth B. Storey, Dan-Na Yu, Jia-Yong Zhang
https://doi.org/10.7717/peerj.9740 PubMed 32879803
August 17, 2020
Database limitations for studying the human gut microbiome
Camila K Dias, Robert Starke, Victor S. Pylro, Daniel K. Morais
https://doi.org/10.7717/peerj-cs.289
August 12, 2020
Taxonomic identification and biological traits of Platystethynium triclavatum (Donev & Huber, 2002), comb. n. (Hymenoptera, Mymaridae), a newly recorded egg parasitoid of the Italian endemic pest Barbitistes vicetinus (Orthoptera, Tettigoniidae)
Giacomo Ortis, Serguei V. Triapitsyn, Giacomo Cavaletto, Isabel Martinez-Sañudo, Luca Mazzon
https://doi.org/10.7717/peerj.9667
August 12, 2020
Whole-genome characterisation of multidrug resistant monophasic variants of Salmonella Typhimurium from pig production in Thailand
Prapas Patchanee, Prawitchaya Tanamai, Phacharaporn Tadee, Matthew D. Hitchings, Jessica K. Calland, Samuel K. Sheppard, Dethaloun Meunsene, Ben Pascoe, Pakpoom Tadee
https://doi.org/10.7717/peerj.9700
August 6, 2020
Variable absorption of mutational trends by prion-forming domains during Saccharomycetes evolution
Paul M. Harrison
https://doi.org/10.7717/peerj.9669 PubMed 32844065
August 5, 2020
Slumber in a cell: honeycomb used by honey bees for food, brood, heating… and sleeping
Barrett A. Klein, M. Kathryn Busby
https://doi.org/10.7717/peerj.9583 PubMed 32844058
August 3, 2020
Comparative transcriptomic analysis of Lactiplantibacillus plantarum RS66CD biofilm in high-salt conditions and planktonic cells
Xiaolin Ao, Jiawei Zhao, Junling Yan, Shuliang Liu, Ke Zhao
https://doi.org/10.7717/peerj.9639 PubMed 32832272
July 30, 2020
Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak
Hikaru Watanabe, Chong Han Ng, Vachiranee Limviphuvadh, Shinya Suzuki, Takuji Yamada
https://doi.org/10.7717/peerj.9579 PubMed 32821539
July 28, 2020
Differential expression between drought-tolerant and drought-sensitive sugarcane under mild and moderate water stress as revealed by a comparative analysis of leaf transcriptome
Wanapinun Nawae, Jeremy R. Shearman, Sithichoke Tangphatsornruang, Prapat Punpee, Thippawan Yoocha, Duangjai Sangsrakru, Chaiwat Naktang, Chutima Sonthirod, Warodom Wirojsirasak, Kittipat Ukoskit, Klanarong Sriroth, Peeraya Klomsa-ard, Wirulda Pootakham
https://doi.org/10.7717/peerj.9608 PubMed 33240580
July 21, 2020
Identification and expression pattern of chemosensory genes in the transcriptome of Propsilocerus akamusi
Chuncai Yan, Xiaoya Sun, Wei Cao, Ruoqun Li, Cong Zhao, Zeyang Sun, Wenbin Liu, Lina Pan
https://doi.org/10.7717/peerj.9584 PubMed 32742817
July 10, 2020
From the index case to global spread: the global mobility based modelling of the COVID-19 pandemic implies higher infection rate and lower detection ratio than current estimates
Marian Siwiak, Pawel Szczesny, Marlena Siwiak
https://doi.org/10.7717/peerj.9548 PubMed 32728498
July 8, 2020
Effect of predation risk and ectoparasitic louse flies on physiological stress condition of the red-tailed tropicbird (Phaethon rubricauda) from Rapa Nui and Salas & Gómez islands
Nicolas Luna, Andrea I. Varela, Guillermo Luna-Jorquera, Katherina Brokordt
https://doi.org/10.7717/peerj.9088 PubMed 32714650
July 7, 2020
Integrating population genetic structure, microbiome, and pathogens presence data in Dermacentor variabilis
Paula Lado, Bo Luan, Michelle E.J. Allerdice, Christopher D. Paddock, Sandor E. Karpathy, Hans Klompen
https://doi.org/10.7717/peerj.9367 PubMed 32704442
July 3, 2020
Identification of novel mutations in RNA-dependent RNA polymerases of SARS-CoV-2 and their implications on its protein structure
Gyanendra Bahadur Chand, Atanu Banerjee, Gajendra Kumar Azad
https://doi.org/10.7717/peerj.9492 PubMed 32685291
July 2, 2020
SSREnricher: a computational approach for large-scale identification of polymorphic microsatellites based on comparative transcriptome analysis
Wei Luo, Qing Wu, Lan Yang, Pengyu Chen, Siqi Yang, Tianzhu Wang, Yan Wang, Zongjun Du
https://doi.org/10.7717/peerj.9372 PubMed 32676221
June 26, 2020
Phylogenetic comparison between Type IX Secretion System (T9SS) protein components suggests evidence of horizontal gene transfer
Reeki Emrizal, Nor Azlan Nor Muhammad
https://doi.org/10.7717/peerj.9019 PubMed 32617187
June 22, 2020
Whole-genome sequence analyses of Glaesserella parasuis isolates reveals extensive genomic variation and diverse antibiotic resistance determinants
Xiulin Wan, Xinhui Li, Todd Osmundson, Chunling Li, He Yan
https://doi.org/10.7717/peerj.9293 PubMed 32607281
June 16, 2020
Reversal of glucocorticoid resistance in Acute Lymphoblastic Leukemia cells by miR-145
Sili Long, Danwei Ren, Fangfang Zhong, Yana Niu, Xiang Qin, Dan Mu, Wenjun Liu
https://doi.org/10.7717/peerj.9337 PubMed 32587801
June 16, 2020
Hiding in plain sight: DNA barcoding suggests cryptic species in all ‘well-known’ Australian flower beetles (Scarabaeidae: Cetoniinae)
Andrew Mitchell, Christian H. Moeseneder, Paul M. Hutchinson
https://doi.org/10.7717/peerj.9348
June 10, 2020
Consumer perceptions and reported wild and domestic meat and fish consumption behavior during the Ebola epidemic in Guinea, West Africa
Lucie Duonamou, Alexandre Konate, Sylvie Djègo Djossou, Guy Apollinaire Mensah, Jiliang Xu, Tatyana Humle
https://doi.org/10.7717/peerj.9229 PubMed 32566394
May 27, 2020
Rapid identification of melioidosis agent by an insulated isothermal PCR on a field–deployable device
Kek Heng Chua, E. Wei Tan, Hwa Chia Chai, SD Puthucheary, Ping Chin Lee, Suat Moi Puah
https://doi.org/10.7717/peerj.9238 PubMed 32518734
May 22, 2020
Human milk microbiota associated with early colonization of the neonatal gut in Mexican newborns
Karina Corona-Cervantes, Igrid García-González, Loan Edel Villalobos-Flores, Fernando Hernández-Quiroz, Alberto Piña-Escobedo, Carlos Hoyo-Vadillo, Martín Noé Rangel-Calvillo, Jaime García-Mena
https://doi.org/10.7717/peerj.9205 PubMed 32509465
May 14, 2020
fRNAkenseq: a fully powered-by-CyVerse cloud integrated RNA-sequencing analysis tool
Allen Hubbard, Matthew Bomhoff, Carl J. Schmidt
https://doi.org/10.7717/peerj.8592 PubMed 32461821
April 28, 2020
intansv: an R package for integrative analysis of structural variations
Lihua Jia, Na Liu, Fangfang Huang, Zhengfu Zhou, Xin He, Haoran Li, Zhizhan Wang, Wen Yao
https://doi.org/10.7717/peerj.8867 PubMed 32377445
April 24, 2020
Ursolic acid improves the bacterial community mapping of the intestinal tract in liver fibrosis mice
Sizhe Wan, Chenkai Huang, Anjiang Wang, Xuan Zhu
https://doi.org/10.7717/peerj.9050 PubMed 32355580
April 23, 2020
“Candidatus Trichorickettsia mobilis”, a Rickettsiales bacterium, can be transiently transferred from the unicellular eukaryote Paramecium to the planarian Dugesia japonica
Letizia Modeo, Alessandra Salvetti, Leonardo Rossi, Michele Castelli, Franziska Szokoli, Sascha Krenek, Valentina Serra, Elena Sabaneyeva, Graziano Di Giuseppe, Sergei I. Fokin, Franco Verni, Giulio Petroni
https://doi.org/10.7717/peerj.8977 PubMed 32351785
April 17, 2020
Deep conservation of prion-like composition in the eukaryotic prion-former Pub1/Tia1 family and its relatives
Wan-Chun Su, Paul M. Harrison
https://doi.org/10.7717/peerj.9023 PubMed 32337108
March 30, 2020
Evaluation of a type 2 modified live porcine reproductive and respiratory syndrome vaccine against heterologous challenge of a lineage 3 highly virulent isolate in pigs
Fu-Hsiang Hou, Wei-Cheng Lee, Jiunn-Wang Liao, Maw-Sheng Chien, Chih-Jung Kuo, Han-Ping Chung, Min-Yuan Chia
https://doi.org/10.7717/peerj.8840 PubMed 32266121
March 27, 2020
Evaluation of δ15N analysis to trace the origin of Diaphorina citri (Hemiptera: Liviidae) to citrus orchard fertilization management
Francesc Gomez-Marco, Andrew Yoshimoto, W. Evan Braswell, Richard Stouthamer
https://doi.org/10.7717/peerj.8807 PubMed 32257642
March 3, 2020
Evolutionary history of the Cameroon radiation of puddle frogs (Phrynobatrachidae: Phrynobatrachus), with descriptions of two critically endangered new species from the northern Cameroon Volcanic Line
Václav Gvoždík, Tadeáš Nečas, Matej Dolinay, Breda M. Zimkus, Andreas Schmitz, Eric B. Fokam
https://doi.org/10.7717/peerj.8393 PubMed 32175182
February 27, 2020
Antimicrobial resistance and genetic relationships of enterococci from siblings and non-siblings Heliconius erato phyllis caterpillars
Rosana Huff, Rebeca Inhoque Pereira, Caroline Pissetti, Aldo Mellender de Araújo, Pedro Alves d’Azevedo, Jeverson Frazzon, Ana Paula GuedesFrazzon
https://doi.org/10.7717/peerj.8647 PubMed 32149028
February 18, 2020
Effectiveness of slightly acidic electrolyzed water on bacteria reduction: in vitro and spray evaluation
Angelica Naka, Masaya Yakubo, Kenji Nakamura, Midori Kurahashi
https://doi.org/10.7717/peerj.8593 PubMed 32110494
February 12, 2020
Detection and characterization of microRNA expression profiling and its target genes in response to canine parvovirus in Crandell Reese Feline Kidney cells
Phongsakorn Chuammitri, Soulasack Vannamahaxay, Benjaporn Sornpet, Kidsadagon Pringproa, Prapas Patchanee
https://doi.org/10.7717/peerj.8522 PubMed 32095352
February 12, 2020
The N-terminal domain of rhamnosyltransferase EpsF influences exopolysaccharide chain length determination in Streptococcus thermophilus 05-34
Guohong Wang, Jiaxi Li, Shuxin Xie, Zhengyuan Zhai, Yanling Hao
https://doi.org/10.7717/peerj.8524 PubMed 32095353
January 23, 2020
Occurrence, ecological function and medical importance of dermestid beetle hastisetae
Enrico Ruzzier, Marcin Kadej, Andrea Battisti
https://doi.org/10.7717/peerj.8340 PubMed 32002326
January 21, 2020
Pseudolebinthus lunipterus sp. nov.: a striking deaf and mute new cricket from Malawi (Orthoptera, Gryllidae, Eneopterinae)
Karen Salazar, Raymond J. Murphy, Marion Guillaume, Romain Nattier, Tony Robillard
https://doi.org/10.7717/peerj.8204 PubMed 31998551
January 15, 2020
Comparison of bacterial diversity and abundance between sexes of Leptocybe invasa Fisher & La Salle (Hymenoptera: Eulophidae) from China
Chunhui Guo, Xin Peng, Xialin Zheng, Xiaoyun Wang, Ruirui Wang, Zongyou Huang, Zhende Yang
https://doi.org/10.7717/peerj.8411 PubMed 31988811
January 6, 2020
The Polycyclic Aromatic Hydrocarbon (PAH) degradation activities and genome analysis of a novel strain Stenotrophomonas sp. Pemsol isolated from Mexico
Temidayo O. Elufisan, Isabel C. Rodríguez-Luna, Omotayo Opemipo Oyedara, Alejandro Sánchez-Varela, Armando Hernández-Mendoza, Edgar Dantán Gonzalez, Alma D. Paz-González, Kashif Muhammad, Gildardo Rivera, Miguel Angel Villalobos-Lopez, Xianwu Guo
https://doi.org/10.7717/peerj.8102 PubMed 31934497
January 6, 2020
sv-callers: a highly portable parallel workflow for structural variant detection in whole-genome sequence data
Arnold Kuzniar, Jason Maassen, Stefan Verhoeven, Luca Santuari, Carl Shneider, Wigard P. Kloosterman, Jeroen de Ridder
https://doi.org/10.7717/peerj.8214 PubMed 31934500
December 17, 2019
Feeding intensity of insect herbivores is associated more closely with key metabolite profiles than phylogenetic relatedness of their potential hosts
Carole B. Rapo, Urs Schaffner, Sanford D. Eigenbrode, Hariet L. Hinz, William J. Price, Matthew Morra, John Gaskin, Mark Schwarzländer
https://doi.org/10.7717/peerj.8203 PubMed 31871839
December 13, 2019
Resident microbes of lactation rooms and daycares
Diana H. Taft, Samir Akre, Nicolas Madrid, Andre Knoesen, David A. Mills, Zachery T. Lewis
https://doi.org/10.7717/peerj.8168 PubMed 31844574
December 10, 2019
Effects of maximum residue limit of triflumezopyrim exposure on fitness of the red imported fire ant Solenopsis invicta
Qiting Li, Fei Zhao, Jiayi Li, QiuHong Tao, JiaQian Gao, Yong-Yue Lu, Lei Wang
https://doi.org/10.7717/peerj.8241 PubMed 31844593
December 6, 2019
A multiple comparative study of putative endosymbionts in three coexisting apple snail species
Federico A. Dellagnola, Cristian Rodriguez, Alfredo Castro-Vazquez, Israel A. Vega
https://doi.org/10.7717/peerj.8125 PubMed 31824764
November 29, 2019
Taxonomic assessment of species of the genus Octopus from the northeastern Pacific via morphological, molecular and morphometric analyses
Mariana Díaz-Santana-Iturrios, César Augusto Salinas-Zavala, Francisco Javier García-Rodríguez, Jasmín Granados-Amores
https://doi.org/10.7717/peerj.8118 PubMed 31803534
November 25, 2019
Visible and near-infrared radiation may be transmitted or absorbed differently by beetle elytra according to habitat preference
Eva Cuesta, Jorge M. Lobo
https://doi.org/10.7717/peerj.8104 PubMed 31788360
November 21, 2019
From command-line bioinformatics to bioGUI
Markus Joppich, Ralf Zimmer
https://doi.org/10.7717/peerj.8111 PubMed 31772845
November 18, 2019
Acquisition of fungi from the environment modifies ambrosia beetle mycobiome during invasion
Davide Rassati, Lorenzo Marini, Antonino Malacrinò
https://doi.org/10.7717/peerj.8103 PubMed 31763076
November 15, 2019
Up-regulation of cryptochrome 1 gene expression in cotton bollworm (Helicoverpa armigera) during migration over the Bohai Sea
Liyu Yang, Yingjie Liu, Philip Donkersley, Pengjun Xu
https://doi.org/10.7717/peerj.8071 PubMed 31741806
November 13, 2019
Effects of miniaturization in the anatomy of the minute springtail Mesaphorura sylvatica (Hexapoda: Collembola: Tullbergiidae)
Irina V. Panina, Mikhail B. Potapov, Alexey A. Polilov
https://doi.org/10.7717/peerj.8037 PubMed 31741793
November 11, 2019
Ghosts from the past: a review of fossil Hepialoidea (Lepidoptera)
Thomas J. Simonsen, David L. Wagner, Maria Heikkilä
https://doi.org/10.7717/peerj.7982 PubMed 31737446
November 7, 2019
Vector distribution and transmission risk of the Zika virus in South and Central America
Sarah Cunze, Judith Kochmann, Lisa K. Koch, Elisa Genthner, Sven Klimpel
https://doi.org/10.7717/peerj.7920 PubMed 31745446
November 5, 2019
Prey selectivity and the effect of diet on growth and development of a dragonfly, Sympetrum sanguineum
Pavla Dudová, David S. Boukal, Jan Klecka
https://doi.org/10.7717/peerj.7881 PubMed 31720101
November 5, 2019
Reconstructing the archosaur radiation using a Middle Triassic archosauriform tooth assemblage from Tanzania
Devin K. Hoffman, Hunter R. Edwards, Paul M. Barrett, Sterling J. Nesbitt
https://doi.org/10.7717/peerj.7970 PubMed 31720109
November 5, 2019
Endless forms of sexual selection
Willow R. Lindsay, Staffan Andersson, Badreddine Bererhi, Jacob Höglund, Arild Johnsen, Charlotta Kvarnemo, Erica H. Leder, Jan T. Lifjeld, Calum E. Ninnes, Mats Olsson, Geoff A. Parker, Tommaso Pizzari, Anna Qvarnström, Rebecca J. Safran, Ola Svensson, Scott V. Edwards
https://doi.org/10.7717/peerj.7988 PubMed 31720113
October 23, 2019
Antibacterial immune functions of subadults and adults in a semelparous spider
Zoltán Rádai, Péter Kiss, Dávid Nagy, Zoltán Barta
https://doi.org/10.7717/peerj.7475 PubMed 31660257
October 14, 2019
Beetle larvae with unusually large terminal ends and a fossil that beats them all (Scraptiidae, Coleoptera)
Joachim T. Haug, Carolin Haug
https://doi.org/10.7717/peerj.7871 PubMed 31632854
October 11, 2019
Realistic scenarios of missing taxa in phylogenetic comparative methods and their effects on model selection and parameter estimation
Rafael S. Marcondes
https://doi.org/10.7717/peerj.7917 PubMed 31616606
October 9, 2019
Improved annotation of Lutzomyia longipalpis genome using bioinformatics analysis
Zhiyuan Yang, Ying Wu
https://doi.org/10.7717/peerj.7862 PubMed 31616601
October 4, 2019
The cuticle inward barrier in Drosophila melanogaster is shaped by mitochondrial and nuclear genotypes and a sex-specific effect of diet
Wei Dong, Ralph Dobler, Damian K. Dowling, Bernard Moussian
https://doi.org/10.7717/peerj.7802 PubMed 31592352
October 1, 2019
Suppression of Wolbachia-mediated male-killing in the butterfly Hypolimnas bolina involves a single genomic region
Louise A. Reynolds, Emily A. Hornett, Chris D. Jiggins, Gregory D.D. Hurst
https://doi.org/10.7717/peerj.7677 PubMed 31592190
September 26, 2019
Kinematics of male Eupalaestrus weijenberghi (Araneae, Theraphosidae) locomotion on different substrates and inclines
Valentina Silva-Pereyra, C Gabriel Fábrica, Carlo M. Biancardi, Fernando Pérez-Miles
https://doi.org/10.7717/peerj.7748 PubMed 31579616
September 26, 2019
Simulated manned Mars exploration: effects of dietary and diurnal cycle variations on the gut microbiome of crew members in a controlled ecological life support system
Hai-Sheng Dong, Pu Chen, Yan-Bo Yu, Peng Zang, Zhao Wei
https://doi.org/10.7717/peerj.7762 PubMed 31579622
September 25, 2019
Bar-HRM: a reliable and fast method for species identification of ginseng (Panax ginseng, Panax notoginseng, Talinum paniculatum and Phytolacca Americana)
Maslin Osathanunkul, Panagiotis Madesis
https://doi.org/10.7717/peerj.7660 PubMed 31579587
September 25, 2019
Identification of genes encoding ALMT and MATE transporters as candidate aluminum tolerance genes from a typical acid soil plant, Psychotria rubra (Rubiaceae)
Akira Iguchi, Kazutsuka Sanmiya, Kenta Watanabe
https://doi.org/10.7717/peerj.7739 PubMed 31579611
September 18, 2019
Open ocean nocturnal insect migration in the Brazilian South Atlantic with comments on flight endurance
Ruy J.V. Alves, Luíz A.A. Costa, Alexandre Soares, Nílber G. Silva, Ângelo P. Pinto
https://doi.org/10.7717/peerj.7583 PubMed 31579573
September 12, 2019
Rhopalocnemis phalloides has one of the most reduced and mutated plastid genomes known
Mikhail I. Schelkunov, Maxim S. Nuraliev, Maria D. Logacheva
https://doi.org/10.7717/peerj.7500 PubMed 31565552
September 10, 2019
Abundance of arthropods as food for meadow bird chicks in response to short- and long-term soil wetting in Dutch dairy grasslands
Livia De Felici, Theunis Piersma, Ruth A. Howison
https://doi.org/10.7717/peerj.7401 PubMed 31565546
September 9, 2019
The new ichthyosauriform Chaohusaurus brevifemoralis (Reptilia, Ichthyosauromorpha) from Majiashan, Chaohu, Anhui Province, China
Jian-dong Huang, Ryosuke Motani, Da-yong Jiang, Andrea Tintori, Olivier Rieppel, Min Zhou, Xin-Xin Ren, Rong Zhang
https://doi.org/10.7717/peerj.7561 PubMed 31565558
September 3, 2019
Kombucha: a novel model system for cooperation and conflict in a complex multi-species microbial ecosystem
Alexander May, Shrinath Narayanan, Joe Alcock, Arvind Varsani, Carlo Maley, Athena Aktipis
https://doi.org/10.7717/peerj.7565 PubMed 31534844
September 2, 2019
The pre-Pleistocene fossil thylacinids (Dasyuromorphia: Thylacinidae) and the evolutionary context of the modern thylacine
Douglass S. Rovinsky, Alistair R. Evans, Justin W. Adams
https://doi.org/10.7717/peerj.7457 PubMed 31534836
August 30, 2019
Serine protease inhibitors and human wellbeing interplay: new insights for old friends
Héla Mkaouar, Nizar Akermi, Aicha Kriaa, Anne-Laure Abraham, Amin Jablaoui, Souha Soussou, Raja Mokdad-Gargouri, Emmanuelle Maguin, Moez Rhimi
https://doi.org/10.7717/peerj.7224 PubMed 31531264
August 28, 2019
Tribe reassessment of the subhimalayan leafhopper genus Pseudosubhimalus (Homoptera: Cicadellidae) based on molecular phylogeny
GN Niranjana, Naresh M. Meshram, Pathour R. Shashank, Stuti, Tahseen Raza Hashmi
https://doi.org/10.7717/peerj.7162 PubMed 31523491
August 28, 2019
OutbreakFinder: a visualization tool for rapid detection of bacterial strain clusters based on optimized multidimensional scaling
Ming-Hsin Tsai, Yen-Yi Liu, Chih-Chieh Chen
https://doi.org/10.7717/peerj.7600 PubMed 31523522
August 27, 2019
A comprehensive molecular phylogeny of Geometridae (Lepidoptera) with a focus on enigmatic small subfamilies
Leidys Murillo-Ramos, Gunnar Brehm, Pasi Sihvonen, Axel Hausmann, Sille Holm, Hamid Reza Ghanavi, Erki Õunap, Andro Truuverk, Hermann Staude, Egbert Friedrich, Toomas Tammaru, Niklas Wahlberg
https://doi.org/10.7717/peerj.7386 PubMed 31523494
August 27, 2019
Genome-resolved insights into a novel Spiroplasma symbiont of the Wheat Stem Sawfly (Cephus cinctus)
Carl J. Yeoman, Laura M. Brutscher, Özcan C. Esen, Furkan Ibaoglu, Curtis Fowler, A. Murat Eren, Kevin Wanner, David K. Weaver
https://doi.org/10.7717/peerj.7548 PubMed 31523509
August 26, 2019
Profiling the lncRNA-miRNA-mRNA ceRNA network to reveal potential crosstalk between inflammatory bowel disease and colorectal cancer
Fangfang Sun, Weiwei Liang, Kejun Tang, Mengying Hong, Jing Qian
https://doi.org/10.7717/peerj.7451 PubMed 31523496
August 22, 2019
Estimating the phylogeny of geoemydid turtles (Cryptodira) from landmark data: an assessment of different methods
Eduardo Ascarrunz, Julien Claude, Walter G. Joyce
https://doi.org/10.7717/peerj.7476 PubMed 31497387
August 20, 2019
A revision of the Neotropical caddisfly genus Ascotrichia Flint, 1983 (Trichoptera, Hydroptilidae)
Robin E. Thomson
https://doi.org/10.7717/peerj.7560 PubMed 31497406
August 16, 2019
Conservation of transcriptional elements in the obligate symbiont of the whitefly Bemisia tabaci
Dan-Tong Zhu, Chi Zou, Fei-Xue Ban, Hua-Ling Wang, Xiao-Wei Wang, Yin-Quan Liu
https://doi.org/10.7717/peerj.7477 PubMed 31440434
August 14, 2019
Conspicuous colours reduce predation rates in fossorial uropeltid snakes
Vivek Philip Cyriac, Ullasa Kodandaramaiah
https://doi.org/10.7717/peerj.7508 PubMed 31428543
August 13, 2019
Dynamics of a methanol-fed marine denitrifying biofilm: 1-Impact of environmental changes on the denitrification and the co-occurrence of Methylophaga nitratireducenticrescens and Hyphomicrobium nitrativorans
Geneviève Payette, Valérie Geoffroy, Christine Martineau, Richard Villemur
https://doi.org/10.7717/peerj.7497 PubMed 31423363
August 13, 2019
Dynamics of a methanol-fed marine denitrifying biofilm: 2—impact of environmental changes on the microbial community
Richard Villemur, Geneviève Payette, Valérie Geoffroy, Florian Mauffrey, Christine Martineau
https://doi.org/10.7717/peerj.7467 PubMed 31423359
August 12, 2019
A new species of terrestrial frog of the genus Noblella Barbour, 1930 (Amphibia: Strabomantidae) from the Llanganates-Sangay Ecological Corridor, Tungurahua, Ecuador
Juan Pablo Reyes-Puig, Carolina Reyes-Puig, Santiago Ron, Jhael A. Ortega, Juan M. Guayasamin, Mindee Goodrum, Fausto Recalde, Jose J. Vieira, Claudia Koch, Mario H. Yánez-Muñoz
https://doi.org/10.7717/peerj.7405 PubMed 31423356
August 5, 2019
Taxonomic reassessment of the genus Dichotomius (Coleoptera: Scarabaeinae) through integrative taxonomy
Carolina Pardo-Diaz, Alejandro Lopera Toro, Sergio Andrés Peña Tovar, Rodrigo Sarmiento-Garcés, Melissa Sanchez Herrera, Camilo Salazar
https://doi.org/10.7717/peerj.7332 PubMed 31404430
August 1, 2019
Fleas of black rats (Rattus rattus) as reservoir host of Bartonella spp. in Chile
Lucila Moreno Salas, Mario Espinoza-Carniglia, Nicol Lizama Schmeisser, L. Gonzalo Torres, María Carolina Silva-de la Fuente, Marcela Lareschi, Daniel González-Acuña
https://doi.org/10.7717/peerj.7371 PubMed 31396444
July 30, 2019
Characterization of the karyotype and accumulation of repetitive sequences in Australian Darling hardyhead Craterocephalus amniculus (Atheriniformes, Teleostei)
Zuzana Majtánová, Karl G. Moy, Peter J. Unmack, Petr Ráb, Tariq Ezaz
https://doi.org/10.7717/peerj.7347 PubMed 31392095
July 26, 2019
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang, Feng Li, Edward Kirton, Ashleigh Thomas, Rob Egan, Hong An, Zhong Wang
https://doi.org/10.7717/peerj.7359 PubMed 31388474
July 26, 2019
Asexual reproduction of a few genotypes favored the invasion of the cereal aphid Rhopalosiphum padi in Chile
María E. Rubio-Meléndez, Joceline Barrios-SanMartin, Felipe E. Pina-Castro, Christian C. Figueroa, Claudio C. Ramirez
https://doi.org/10.7717/peerj.7366 PubMed 31388475
July 23, 2019
Mitochondrial phylogeny and comparative mitogenomics of closely related pine moth pests (Lepidoptera: Dendrolimus)
Jie Qin, Jing Li, Qiang Gao, John-James Wilson, Ai-bing Zhang
https://doi.org/10.7717/peerj.7317 PubMed 31372319
July 19, 2019
RITAN: rapid integration of term annotation and network resources
Michael T. Zimmermann, Brian Kabat, Diane E. Grill, Richard B. Kennedy, Gregory A. Poland
https://doi.org/10.7717/peerj.6994 PubMed 31355053
July 15, 2019
Molecular characterization of bacterial leaf streak resistance in hard winter wheat
Sai Mukund Ramakrishnan, Jagdeep Singh Sidhu, Shaukat Ali, Navjot Kaur, Jixiang Wu, Sunish K. Sehgal
https://doi.org/10.7717/peerj.7276 PubMed 31341737
July 9, 2019
BioShake: a Haskell EDSL for bioinformatics workflows
Justin Bedő
https://doi.org/10.7717/peerj.7223 PubMed 31328031
July 2, 2019
The role of dispersal for shaping phylogeographical structure of flightless beetles from the Andes
Sofia I. Muñoz-Tobar, Michael S. Caterino
https://doi.org/10.7717/peerj.7226 PubMed 31304068
July 1, 2019
Diversity and distribution of nearshore barnacle cyprids in southern California through the 2015–16 El Niño
Malloree L. Hagerty, Nathalie Reyns, Jesús Pineda, Annette F. Govindarajan
https://doi.org/10.7717/peerj.7186 PubMed 31304059
June 28, 2019
Genome sequencing and analysis of Salmonella enterica subsp. enterica serovar Stanley UPM 517: Insights on its virulence-associated elements and their potentials as vaccine candidates
Khalidah Syahirah Ashari, Najwa Syahirah Roslan, Abdul Rahman Omar, Mohd Hair Bejo, Aini Ideris, Nurulfiza Mat Isa
https://doi.org/10.7717/peerj.6948 PubMed 31293824
June 25, 2019
False head complexity and evidence of predator attacks in male and female hairstreak butterflies (Lepidoptera: Theclinae: Eumaeini) from Mexico
Eric Novelo Galicia, Moisés Armando Luis Martínez, Carlos Cordero
https://doi.org/10.7717/peerj.7143 PubMed 31275751
June 24, 2019
Osteology and phylogeny of Robustichthys luopingensis, the largest holostean fish in the Middle Triassic
Guang-Hui Xu
https://doi.org/10.7717/peerj.7184 PubMed 31275762
June 21, 2019
Skin bacterial communities of neotropical treefrogs vary with local environmental conditions at the time of sampling
Angie Estrada, Myra C. Hughey, Daniel Medina, Eria A. Rebollar, Jenifer B. Walke, Reid N. Harris, Lisa K. Belden
https://doi.org/10.7717/peerj.7044 PubMed 31275740
June 19, 2019
Fishing for vaccines against Vibrio cholerae using in silico pan-proteomic reverse vaccinology approach
Muhammad I. Rashid, Sammia Rehman, Amjad Ali, Saadia Andleeb
https://doi.org/10.7717/peerj.6223 PubMed 31249730
June 17, 2019
Coleoptera genome and transcriptome sequences reveal numerous differences in neuropeptide signaling between species
Jan A. Veenstra
https://doi.org/10.7717/peerj.7144 PubMed 31245184
June 14, 2019
Genome-wide analyses of the bHLH gene family reveals structural and functional characteristics in the aquatic plant Nelumbo nucifera
Tian-Yu Mao, Yao-Yao Liu, Huan-Huan Zhu, Jie Zhang, Ju-Xiang Yang, Qiang Fu, Nian Wang, Ze Wang
https://doi.org/10.7717/peerj.7153 PubMed 31231599
June 13, 2019
Development of the cephalopod-specific universal primer set and its application for the metabarcoding analysis of planktonic cephalopods in Korean waters
Eun-Bi Kim, Soo Rin Lee, Chung Il Lee, Hyun Park, Hyun-Woo Kim
https://doi.org/10.7717/peerj.7140 PubMed 31223542
June 12, 2019
Sex- and tissue-specific expression of odorant-binding proteins and chemosensory proteins in adults of the scarab beetle Hylamorpha elegans (Burmeister) (Coleoptera: Scarabaeidae)
Angélica González-González, María E. Rubio-Meléndez, Gabriel I. Ballesteros, Claudio C. Ramírez, Rubén Palma-Millanao
https://doi.org/10.7717/peerj.7054 PubMed 31223529
June 11, 2019
Conservation and diversity in expression of candidate genes regulating socially-induced female-male sex change in wrasses
Jodi T. Thomas, Erica V. Todd, Simon Muncaster, P Mark Lokman, Erin L. Damsteegt, Hui Liu, Kiyoshi Soyano, Florence Gléonnec, Melissa S. Lamm, John R. Godwin, Neil J. Gemmell
https://doi.org/10.7717/peerj.7032 PubMed 31218121
June 7, 2019
Prediction of bacterial E3 ubiquitin ligase effectors using reduced amino acid peptide fingerprinting
Jason E. McDermott, John R. Cort, Ernesto S. Nakayasu, Jonathan N. Pruneda, Christopher Overall, Joshua N. Adkins
https://doi.org/10.7717/peerj.7055 PubMed 31211016
June 5, 2019
Characterization of genes encoding small heat shock proteins from Bemisia tabaci and expression under thermal stress
Jing Bai, Xiao-Na Liu, Ming-Xing Lu, Yu-Zhou Du
https://doi.org/10.7717/peerj.6992 PubMed 31205823
May 29, 2019
Soil bacterial and fungal communities of six bahiagrass cultivars
Lukas Beule, Ko-Hsuan Chen, Chih-Ming Hsu, Cheryl Mackowiak, Jose C.B. Dubeux Jr., Ann Blount, Hui-Ling Liao
https://doi.org/10.7717/peerj.7014 PubMed 31179193
May 28, 2019
The biogeography of Elaphe sauromates (Pallas, 1814), with a description of a new rat snake species
Daniel Jablonski, Oleg V. Kukushkin, Aziz Avcı, Sabina Bunyatova, Yusuf Kumlutaş, Çetin Ilgaz, Ekaterina Polyakova, Konstantin Shiryaev, Boris Tuniyev, David Jandzik
https://doi.org/10.7717/peerj.6944 PubMed 31179175
May 17, 2019
Spatial variations of microbial communities in abyssal and hadal sediments across the Challenger Deep
Guojie Cui, Jun Li, Zhaoming Gao, Yong Wang
https://doi.org/10.7717/peerj.6961 PubMed 31149407
May 16, 2019
Phylogeography of Dictyota fasciola and Dictyota mediterranea (Dictyotales, Phaeophyceae): unexpected patterns on the Atlantic-Mediterranean marine transition and taxonomic implications
Daniel Vitales, Joana Aragay, Teresa Garnatje, Amelia Gómez Garreta, Jordi Rull Lluch
https://doi.org/10.7717/peerj.6916 PubMed 31143543
May 10, 2019
Species delimitation of the Dermacentor ticks based on phylogenetic clustering and niche modeling
Fang Wang, Duo Wang, Ge Guo, Yonghong Hu, Jiufeng Wei, Jingze Liu
https://doi.org/10.7717/peerj.6911 PubMed 31123639
May 7, 2019
The microbiome profiling of fungivorous black tinder fungus beetle Bolitophagus reticulatus reveals the insight into bacterial communities associated with larvae and adults
Agnieszka Kaczmarczyk-Ziemba, Grzegorz K. Wagner, Krzysztof Grzywnowicz, Marek Kucharczyk, Sylwia Zielińska
https://doi.org/10.7717/peerj.6852 PubMed 31119076
May 3, 2019
Phylogenomic analysis and revised classification of atypoid mygalomorph spiders (Araneae, Mygalomorphae), with notes on arachnid ultraconserved element loci
Marshal Hedin, Shahan Derkarabetian, Adan Alfaro, Martín J. Ramírez, Jason E. Bond
https://doi.org/10.7717/peerj.6864 PubMed 31110925
May 2, 2019
Characterization of the mitochondrial genome of Analcellicampa xanthosoma gen. et sp. nov. (Hymenoptera: Tenthredinidae)
Gengyun Niu, Yaoyao Zhang, Zhenyi Li, Meicai Wei
https://doi.org/10.7717/peerj.6866 PubMed 31106070
May 1, 2019
A novel conserved family of Macro-like domains—putative new players in ADP-ribosylation signaling
Małgorzata Dudkiewicz, Krzysztof Pawłowski
https://doi.org/10.7717/peerj.6863 PubMed 31106069
April 30, 2019
Biodiversity seen through the perspective of insects: 10 simple rules on methodological choices and experimental design for genomic studies
Pável Matos-Maraví, Camila Duarte Ritter, Christopher J. Barnes, Martin Nielsen, Urban Olsson, Niklas Wahlberg, Daniel Marquina, Ilari Sääksjärvi, Alexandre Antonelli
https://doi.org/10.7717/peerj.6727 PubMed 31106048
April 12, 2019
Extracting the invisible: obtaining high quality DNA is a challenging task in small arthropods
Andrea Lienhard, Sylvia Schäffer
https://doi.org/10.7717/peerj.6753 PubMed 30997294
April 10, 2019
Genetic data of museum specimens allow for inferring evolutionary history of the cosmopolitan genus Sirthenea (Heteroptera: Reduviidae)
Dominik Chłond, Natalia Sawka-Gądek, Dagmara Żyła
https://doi.org/10.7717/peerj.6640 PubMed 30993035
April 8, 2019
Non-host class II ribonucleotide reductase in Thermus viruses: sequence adaptation and host interaction
Christoph Loderer, Karin Holmfeldt, Daniel Lundin
https://doi.org/10.7717/peerj.6700 PubMed 30993041
April 4, 2019
Spiders did not repeatedly gain, but repeatedly lost, foraging webs
Jonathan A. Coddington, Ingi Agnarsson, Chris A. Hamilton, Jason E. Bond
https://doi.org/10.7717/peerj.6703 PubMed 30976470
April 3, 2019
A longitudinal study of the faecal microbiome and metabolome of periparturient mares
Shebl E. Salem, Rachael Hough, Chris Probert, Thomas W. Maddox, Philipp Antczak, Julian M. Ketley, Nicola J. Williams, Sarah J. Stoneham, Debra C. Archer
https://doi.org/10.7717/peerj.6687 PubMed 30976468
March 21, 2019
The chemical composition of a new “mica sandwich” foraminiferal species from the East Coast of Korea: Capsammina crassa sp. nov.
Somin Lee, Eric Armynot du Châtelet, Andrew J. Gooday, François Guillot, Philippe Recourt, Fabrizio Frontalini, Wonchoel Lee
https://doi.org/10.7717/peerj.6642 PubMed 30923656
March 12, 2019
A new ancient lineage of frog (Anura: Nyctibatrachidae: Astrobatrachinae subfam. nov.) endemic to the Western Ghats of Peninsular India
Seenapuram Palaniswamy Vijayakumar, Robert Alexander Pyron, K. P. Dinesh, Varun R. Torsekar, Achyuthan N. Srikanthan, Priyanka Swamy, Edward L. Stanley, David C. Blackburn, Kartik Shanker
https://doi.org/10.7717/peerj.6457 PubMed 30881763
March 5, 2019
Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework
Gemma Henderson, Pelin Yilmaz, Sandeep Kumar, Robert J. Forster, William J. Kelly, Sinead C. Leahy, Le Luo Guan, Peter H. Janssen
https://doi.org/10.7717/peerj.6496 PubMed 30863673
March 4, 2019
A new method of gall mite management: application of artificial defoliation to control Aceria pallida
Jianling Li, Sai Liu, Kun Guo, Haili Qiao, Rong Xu, Changqing Xu, Jun Chen
https://doi.org/10.7717/peerj.6503 PubMed 30863674
March 1, 2019
Mitochondrial complex activity in permeabilised cells of chronic fatigue syndrome patients using two cell types
Cara Tomas, Audrey E. Brown, Julia L. Newton, Joanna L. Elson
https://doi.org/10.7717/peerj.6500 PubMed 30847260
March 1, 2019
The role of juvenile hormone in regulating reproductive physiology and dominance in Dinoponera quadriceps ants
Victoria C. Norman, Tobias Pamminger, Fabio Nascimento, William O.H. Hughes
https://doi.org/10.7717/peerj.6512 PubMed 30842903
February 28, 2019
TarSynFlow, a workflow for bacterial genome comparisons that revealed genes putatively involved in the probiotic character of Shewanella putrefaciens strain Pdp11
Pedro Seoane, Silvana T. Tapia-Paniagua, Rocío Bautista, Elena Alcaide, Consuelo Esteve, Eduardo Martínez-Manzanares, M. Carmen Balebona, M. Gonzalo Claros, Miguel A. Moriñigo
https://doi.org/10.7717/peerj.6526 PubMed 30842906
February 26, 2019
A new glassfrog (Centrolenidae) from the Chocó-Andean Río Manduriacu Reserve, Ecuador, endangered by mining
Juan M. Guayasamin, Diego F. Cisneros-Heredia, José Vieira, Sebastián Kohn, Gabriela Gavilanes, Ryan L. Lynch, Paul S. Hamilton, Ross J. Maynard
https://doi.org/10.7717/peerj.6400 PubMed 30863669
February 25, 2019
Integrative taxonomic reassessment of Odontophrynus populations in Argentina and phylogenetic relationships within Odontophrynidae (Anura)
Adolfo Ludovico Martino, Jonas Maximilian Dehling, Ulrich Sinsch
https://doi.org/10.7717/peerj.6480 PubMed 30828491
February 21, 2019
The draft genome of strain cCpun from biting midges confirms insect Cardinium are not a monophyletic group and reveals a novel gene family expansion in a symbiont
Stefanos Siozios, Jack Pilgrim, Alistair C. Darby, Matthew Baylis, Gregory D.D. Hurst
https://doi.org/10.7717/peerj.6448 PubMed 30809447
February 18, 2019
Stress responses upon starvation and exposure to bacteria in the ant Formica exsecta
Dimitri Stucki, Dalial Freitak, Nick Bos, Liselotte Sundström
https://doi.org/10.7717/peerj.6428 PubMed 30805249
February 8, 2019
Response of adult honey bees treated in larval stage with prochloraz to infection with Nosema ceranae
Uros Glavinic, Tanja Tesovnik, Jevrosima Stevanovic, Minja Zorc, Ivanka Cizelj, Zoran Stanimirovic, Mojca Narat
https://doi.org/10.7717/peerj.6325 PubMed 30775168
January 28, 2019
Gastric Helicobacter pylori infection perturbs human oral microbiota
Eng-Guan Chua, Ju-Yee Chong, Binit Lamichhane, K. Mary Webberley, Barry J. Marshall, Michael J. Wise, Chin-Yen Tay
https://doi.org/10.7717/peerj.6336 PubMed 30713820
January 23, 2019
GenoDup Pipeline: a tool to detect genome duplication using the dS-based method
Yafei Mao
https://doi.org/10.7717/peerj.6303 PubMed 30697488
January 18, 2019
A large cockroach from the mesosaur-bearing Konservat-Lagerstätte (Mangrullo Formation), Late Paleozoic of Uruguay
Viviana Calisto, Graciela Piñeiro
https://doi.org/10.7717/peerj.6289 PubMed 30687590
January 16, 2019
Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data
Diana Kraus, Jingyun Chi, Jens Boenigk, Daniela Beisser, Nadine Graupner, Micah Dunthorn
https://doi.org/10.7717/peerj.5894 PubMed 30671284
January 11, 2019
Assigning confidence scores to homoeologs using fuzzy logic
Natasha M. Glover, Adrian Altenhoff, Christophe Dessimoz
https://doi.org/10.7717/peerj.6231 PubMed 30648004
January 7, 2019
Intestinal parasitic infection alters bacterial gut microbiota in children
Miguel A. Toro-Londono, Katherine Bedoya-Urrego, Gisela M. Garcia-Montoya, Ana L. Galvan-Diaz, Juan F. Alzate
https://doi.org/10.7717/peerj.6200 PubMed 30643702
December 21, 2018
Characterization of the mitochondrial genome of Arge bella Wei & Du sp. nov. (Hymenoptera: Argidae)
Shiyu Du, Gengyun Niu, Tommi Nyman, Meicai Wei
https://doi.org/10.7717/peerj.6131 PubMed 30595984
December 11, 2018
Founder effects drive the genetic structure of passively dispersed aquatic invertebrates
Javier Montero-Pau, Africa Gómez, Manuel Serra
https://doi.org/10.7717/peerj.6094 PubMed 30581680
December 5, 2018
Importance of biotic predictors in estimation of potential invasive areas: the example of the tortoise beetle Eurypedus nigrosignatus, in Hispaniola
Marianna V.P. Simões, A. Townsend Peterson
https://doi.org/10.7717/peerj.6052 PubMed 30568860
November 30, 2018
Between extreme simplification and ideal optimization: antennal sensilla morphology of miniaturized Megaphragma wasps (Hymenoptera: Trichogrammatidae)
Anna V. Diakova, Anastasia A. Makarova, Alexey A. Polilov
https://doi.org/10.7717/peerj.6005 PubMed 30533303
November 27, 2018
DockerBIO: web application for efficient use of bioinformatics Docker images
ChangHyuk Kwon, Jason Kim, Jaegyoon Ahn
https://doi.org/10.7717/peerj.5954 PubMed 30515360
November 14, 2018
Skin bacterial diversity is higher on lizards than sympatric frogs in tropical Australia
Chava L. Weitzman, Karen Gibb, Keith Christian
https://doi.org/10.7717/peerj.5960 PubMed 30479906
November 14, 2018
Honey bee viruses in Serbian colonies of different strength
Dragan Cirkovic, Jevrosima Stevanovic, Uros Glavinic, Nevenka Aleksic, Spomenka Djuric, Jelena Aleksic, Zoran Stanimirovic
https://doi.org/10.7717/peerj.5887 PubMed 30479890
November 12, 2018
Genetic evidence supports a distinct lineage of American crocodile (Crocodylus acutus) in the Greater Antilles
Yoamel Milián-García, Michael A. Russello, Jessica Castellanos-Labarcena, Martin Cichon, Vikas Kumar, Georgina Espinosa, Natalia Rossi, Frank Mazzotti, Evon Hekkala, George Amato, Axel Janke
https://doi.org/10.7717/peerj.5836 PubMed 30473930
November 2, 2018
Home sick: impacts of migratory beekeeping on honey bee (Apis mellifera) pests, pathogens, and colony size
Samantha A. Alger, P. Alexander Burnham, Zachary S. Lamas, Alison K. Brody, Leif L. Richardson
https://doi.org/10.7717/peerj.5812 PubMed 30405967
November 1, 2018
Plant defense elicitors: plant fitness versus wheat stem sawfly
Govinda Shrestha, Shabeg S. Briar, Gadi V.P. Reddy
https://doi.org/10.7717/peerj.5892 PubMed 30402358
October 31, 2018
BioInstaller: a comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
Jianfeng Li, Bowen Cui, Yuting Dai, Ling Bai, Jinyan Huang
https://doi.org/10.7717/peerj.5853 PubMed 30402350
October 30, 2018
Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing
Jittima Piriyapongsa, Pavita Kaewprommal, Sirintra Vaiwsri, Songtham Anuntakarun, Warodom Wirojsirasak, Prapat Punpee, Peeraya Klomsa-ard, Philip J. Shaw, Wirulda Pootakham, Thippawan Yoocha, Duangjai Sangsrakru, Sithichoke Tangphatsornruang, Sissades Tongsima, Somvong Tragoonrung
https://doi.org/10.7717/peerj.5818 PubMed 30397543
October 26, 2018
Three, two, one! Revision of the long-bodied sphaerodorids (Sphaerodoridae, Annelida) and synonymization of Ephesiella, Ephesiopsis and Sphaerodorum
María Capa, Torkild Bakken, Karin Meißner, Arne Nygren
https://doi.org/10.7717/peerj.5783 PubMed 30386698
October 25, 2018
Investigating leaf beetles (Coleoptera, Chrysomelidae) on the west coast islands of Sabah via checklist-taking and DNA barcoding
Kam-Cheng Yeong, Haruo Takizawa, Thor-Seng Liew
https://doi.org/10.7717/peerj.5811 PubMed 30386703
October 18, 2018
What is an archaeon and are the Archaea really unique?
Ajith Harish
https://doi.org/10.7717/peerj.5770 PubMed 30357005
October 16, 2018
Analysis of adult damselfly fecal material aids in the estimation of antibiotic-resistant Enterobacterales contamination of the local environment
Yuyu Yamaguchi, Torahiko Okubo, Mizue Matsushita, Masashi Wataji, Sumio Iwasaki, Kasumi Hayasaka, Kouzi Akizawa, Junji Matsuo, Chikara Shimizu, Hiroyuki Yamaguchi
https://doi.org/10.7717/peerj.5755 PubMed 30356992
October 9, 2018
Artificial light at night alters life history in a nocturnal orb-web spider
Nikolas J. Willmott, Jessica Henneken, Caitlin J. Selleck, Therésa M. Jones
https://doi.org/10.7717/peerj.5599 PubMed 30324009
September 28, 2018
New mud dragons from Svalbard: three new species of Cristaphyes and the first Arctic species of Pycnophyes (Kinorhyncha: Allomalorhagida: Pycnophyidae)
Martin Vinther Sørensen, Katarzyna Grzelak
https://doi.org/10.7717/peerj.5653 PubMed 30280030
September 3, 2018
A bioinformatics approach to identifying Wolbachia infections in arthropods
Jane Pascar, Christopher H. Chandler
https://doi.org/10.7717/peerj.5486 PubMed 30202647
August 27, 2018
Distribution of Porphyromonas gingivalis fimA and mfa1 fimbrial genotypes in subgingival plaques
Keiji Nagano, Yoshiaki Hasegawa, Yura Iijima, Takeshi Kikuchi, Akio Mitani
https://doi.org/10.7717/peerj.5581 PubMed 30186705
July 31, 2018
Venomix: a simple bioinformatic pipeline for identifying and characterizing toxin gene candidates from transcriptomic data
Jason Macrander, Jyothirmayi Panda, Daniel Janies, Marymegan Daly, Adam M. Reitzel
https://doi.org/10.7717/peerj.5361 PubMed 30083468
July 26, 2018
‘Rolling’ stoneflies (Insecta: Plecoptera) from mid-Cretaceous Burmese amber
Pavel Sroka, Arnold H. Staniczek, Boris C. Kondratieff
https://doi.org/10.7717/peerj.5354 PubMed 30065894
July 3, 2018
AnnotationBustR: an R package to extract subsequences from GenBank annotations
Samuel R. Borstein, Brian C. O’Meara
https://doi.org/10.7717/peerj.5179 PubMed 30002984
June 27, 2018
Nectopsyche of Ecuador: a new species from the high Andean páramo and redescription of Nectopsyche spiloma (Ross) (Trichoptera: Leptoceridae)
Ralph W. Holzenthal, Blanca Rios-Touma
https://doi.org/10.7717/peerj.4981 PubMed 29967719
June 26, 2018
A reference cytochrome c oxidase subunit I database curated for hierarchical classification of arthropod metabarcoding data
Rodney T. Richardson, Johan Bengtsson-Palme, Mary M. Gardiner, Reed M. Johnson
https://doi.org/10.7717/peerj.5126 PubMed 29967752
June 25, 2018
It’s a matter of design—how pitfall trap design affects trap samples and possible predictions
Fabian A. Boetzl, Elena Ries, Gudrun Schneider, Jochen Krauss
https://doi.org/10.7717/peerj.5078 PubMed 29967739
June 12, 2018
Taxonomy annotation and guide tree errors in 16S rRNA databases
Robert Edgar
https://doi.org/10.7717/peerj.5030 PubMed 29910992
May 28, 2018
Proteomics of Nasonia vitripennis and the effects of native Wolbachia infection on N. vitripennis
Jie Li, Ningxin Wang, Yong Liu, Shiqi Qiu
https://doi.org/10.7717/peerj.4905 PubMed 29868291
May 25, 2018
Rapid evolution of the Helicobacter pylori AlpA adhesin in a high gastric cancer risk region from Colombia
Andrés Julián Gutiérrez-Escobar, Gina Méndez-Callejas, Orlando Acevedo, Maria Mercedes Bravo
https://doi.org/10.7717/peerj.4846 PubMed 29844987
May 25, 2018
Selective constraint acting on TLR2 and TLR4 genes of Japanese Rana frogs
Quintin Lau, Takeshi Igawa, Tiffany A. Kosch, Yoko Satta
https://doi.org/10.7717/peerj.4842 PubMed 29844986
May 11, 2018
‘2TM proteins’: an antigenically diverse superfamily with variable functions and export pathways
Jasweer Kaur, Rachna Hora
https://doi.org/10.7717/peerj.4757 PubMed 29770278
May 8, 2018
Uncovering the hidden players in Lepidoptera biology: the heritable microbial endosymbionts
Anne Duplouy, Emily A. Hornett
https://doi.org/10.7717/peerj.4629 PubMed 29761037
May 7, 2018
Crystallization and structure analysis of the core motif of the Pks13 acyltransferase domain from Mycobacterium tuberculosis
Mingjing Yu, Chao Dou, Yijun Gu, Wei Cheng
https://doi.org/10.7717/peerj.4728 PubMed 29761048
April 19, 2018
Host and symbiont genetic contributions to fitness in a Trichogramma–Wolbachia symbiosis
James E. Russell, Leonard Nunney, Michael Saum, Richard Stouthamer
https://doi.org/10.7717/peerj.4655 PubMed 29686946
April 2, 2018
PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads
Märt Roosaare, Mikk Puustusmaa, Märt Möls, Mihkel Vaher, Maido Remm
https://doi.org/10.7717/peerj.4588 PubMed 29629246
March 9, 2018
Current state of knowledge on Wolbachia infection among Coleoptera: a systematic review
Łukasz Kajtoch, Nela Kotásková
https://doi.org/10.7717/peerj.4471 PubMed 29568706
January 25, 2018
Molecular and serological dynamics of Chlamydia pecorum infection in a longitudinal study of prime lamb production
Sankhya Bommana, Evelyn Walker, Marion Desclozeaux, Martina Jelocnik, Peter Timms, Adam Polkinghorne, Scott Carver
https://doi.org/10.7717/peerj.4296 PubMed 29379689
December 13, 2017
Shift of symbiont communities in Acropora tenuis juveniles under heat stress
Makiko Yorifuji, Saki Harii, Ryota Nakamura, Masayuki Fudo
https://doi.org/10.7717/peerj.4055 PubMed 29255647
November 3, 2017
New species of the endemic Neotropical caddisfly genus Contulma from the Andes of Ecuador (Trichoptera: Anomalopsychidae)
Ralph W. Holzenthal, Blanca Ríos-Touma, Ernesto Rázuri-Gonzales
https://doi.org/10.7717/peerj.3967 PubMed 29114439
October 23, 2017
The comparison of molecular and morphology-based phylogenies of trichaline net-winged beetles (Coleoptera: Lycidae: Metriorrhynchini) with description of a new subgenus
Matej Bocek, Ladislav Bocak
https://doi.org/10.7717/peerj.3963 PubMed 29085759
October 12, 2017
Nests of red wood ants (Formica rufa-group) are positively associated with tectonic faults: a double-blind test
Israel Del Toro, Gabriele M. Berberich, Relena R. Ribbons, Martin B. Berberich, Nathan J. Sanders, Aaron M. Ellison
https://doi.org/10.7717/peerj.3903 PubMed 29038759
September 26, 2017
The Legionella pneumophila effector Lpg1137 is a homologue of mitochondrial SLC25 carrier proteins, not of known serine proteases
Marcin Gradowski, Krzysztof Pawłowski
https://doi.org/10.7717/peerj.3849 PubMed 28966893
September 8, 2017
Development and evaluation of rapid novel isothermal amplification assays for important veterinary pathogens: Chlamydia psittaci and Chlamydia pecorum
Martina Jelocnik, Md. Mominul Islam, Danielle Madden, Cheryl Jenkins, James Branley, Scott Carver, Adam Polkinghorne
https://doi.org/10.7717/peerj.3799 PubMed 28929022
June 27, 2017
Penetrance of symbiont-mediated parthenogenesis is driven by reproductive rate in a parasitoid wasp
Amelia R.I. Lindsey, Richard Stouthamer
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