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Microbiology at PeerJ

Latest articles

Widespread occurrence of fecal indicator bacteria in oligotrophic tropical streams. Are common culture-based coliform tests appropriate?
Karina Chavarria, Jorge Batista, Kristin Saltonstall
Effect of sodium formate and lactic acid bacteria treated rye silage on methane yield and energy balance in Hanwoo steers
Yongjun Choi, Jayeon Kim, Geumhwi Bang, Nayeon Kim, Krishnaraj Thirugnanasambantham, Sangrak Lee, Kyoung Hoon Kim, Rajaraman Bharanidharan
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Surprising diversity of new plasmids in bacteria isolated from hemorrhoid patients
Yihua Wang, Wenya Su, Xiang Zeng, Zhaopeng Liu, Jiaming Zhu, Mingyu Wang, Ling Li, Wenlong Shen
Comparisons of genome assembly tools for characterization of Mycobacterium tuberculosis genomes using hybrid sequencing technologies
Kanwara Trisakul, Yothin Hinwan, Jukgarin Eisiri, Kanin Salao, Angkana Chaiprasert, Phalin Kamolwat, Sissades Tongsima, Susana Campino, Jody Phelan, Taane G. Clark, Kiatichai Faksri

Widely read

VSEARCH: a versatile open source tool for metagenomics
Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé
72,439 views · 9,495 downloads
Humans differ in their personal microbial cloud
James F. Meadow, Adam E. Altrichter, Ashley C. Bateman, Jason Stenson, GZ Brown, Jessica L. Green, Brendan J.M. Bohannan
70,384 views · 7,036 downloads
The effect of habitual and experimental antiperspirant and deodorant product use on the armpit microbiome
Julie Urban, Daniel J. Fergus, Amy M. Savage, Megan Ehlers, Holly L. Menninger, Robert R. Dunn, Julie E. Horvath
57,589 views · 3,219 downloads
Genome-scale investigation of phenotypically distinct but nearly clonal Trichoderma strains
Claudia Lange, Richard J. Weld, Murray P. Cox, Rosie E. Bradshaw, Kirstin L. McLean, Alison Stewart, Johanna M. Steyaert
56,915 views · 1,047 downloads
Anvi’o: an advanced analysis and visualization platform for ‘omics data
A. Murat Eren, Özcan C. Esen, Christopher Quince, Joseph H. Vineis, Hilary G. Morrison, Mitchell L. Sogin, Tom O. Delmont
42,592 views · 6,356 downloads

Editors' picks

Development and evaluation of a rapid visual loop-mediated isothermal amplification assay for the tcdA gene in Clostridioides difficile detection
Minyi Lin, Pu Wang, Bingyun Lu, Ming Jin, Jiasheng Tan, Wei Liu, Jing Yuan, Xiaomou Peng, Ye Chen
Holobiont dysbiosis or acclimatation? Shift in the microbial taxonomic diversity and functional composition of a cosmopolitan sponge subjected to chronic pollution in a Patagonian bay
Marianela Gastaldi, M. Sabrina Pankey, Guillermo Svendsen, Alonso Medina, Fausto Firstater, Maite Narvarte, Mariana Lozada, Michael Lesser

Recently cited

VSEARCH: a versatile open source tool for metagenomics
Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé
6,817 citations · 72,439 views · 9,495 downloads
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
Dongwan D. Kang, Feng Li, Edward Kirton, Ashleigh Thomas, Rob Egan, Hong An, Zhong Wang
1,954 citations · 24,497 views · 3,222 downloads
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This Microbiology Overlay is a subset of the peer-reviewed articles found in PeerJ .

Subject pages or "Overlays" are like filtered subject journals helping you discover your community within the wider multi-disciplinary PeerJ venues.

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PeerJ Expert Curations: Molecular Ecology
PeerJ Expert Curations: Rapid Evolution
Anthropogenic Impact on Microbe-Host Diversity in the Global South
6th World Conference on Marine Biodiversity: WCMB 2023
World Seagrass Day 2023
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