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Bronze Contributor

Robert Winkler

PeerJ Editor, Author & Reviewer

Summary

Robert Winkler is Principal Investigator of the Laboratory of Biochemical and Instrumental Analysis at the CINVESTAV Unidad Irapuato and faculty member for the postgraduate programs Plant Biotechnology and Integrative Biology. His research topics include novel mass spectrometry techniques such as low-temperature plasma ionization and covalent protein staining, new approaches in the high-throughput metabolomic profiling of plants, computational mass spectrometry and proteomics.

Agricultural Science Analytical Chemistry (other) Biochemistry Bioengineering Bioinformatics Biotechnology Computational Biology Distributed & Parallel Computing Emerging Technologies Mass Spectrometry Novel Analytical Technologies Omics Technologies Operating Systems Plant Science Programming Languages Software Engineering Statistics Surface & Structural Imaging

Section Editor

Plant Biology

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

PeerJ Computer Science

PeerJ Analytical Chemistry

PeerJ Materials Science

Work details

Professor, Head of Laboratory

CINVESTAV Irapuato

UGA-Langebio

Websites

PeerJ Contributions

July 26, 2024

An intense 60-day weight-loss course leads to an 18 kg body weight reduction and metabolic reprogramming of soldiers with obesity

Exsal M. Albores-Méndez, Humberto Carrasco-Vargas, Samary Alaniz Monreal, Rodolfo David Mayen Quinto, Ernesto Diderot López García, Gabriela Gutierrez Salmean, Karen Medina-Quero, Marco A. Vargas-Hernández, Cesar Vicente Ferreira Batista, Yamilé López-Hernández, Robert Winkler

https://doi.org/10.7717/peerj.17757 PubMed 39076775

July 22, 2022

A diagnostic model for overweight and obesity from untargeted urine metabolomics of soldiers

Exsal M. Albores-Mendez, Alexis D. Aguilera Hernández, Alejandra Melo-González, Marco A. Vargas-Hernández, Neptalí Gutierrez de la Cruz, Miguel A. Vazquez-Guzman, Melchor Castro-Marín, Pablo Romero-Morelos, Robert Winkler

https://doi.org/10.7717/peerj.13754 PubMed 35898940

June 9, 2021

Contrast optimization of mass spectrometry imaging (MSI) data visualization by threshold intensity quantization (TrIQ)

Ignacio Rosas-Román, Robert Winkler

https://doi.org/10.7717/peerj-cs.585

February 23, 2021

MeteoMex: open infrastructure for networked environmental monitoring and agriculture 4.0

Robert Winkler

https://doi.org/10.7717/peerj-cs.343

April 23, 2020

Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit

Víctor Olalde-Portugal, José Luis Cabrera-Ponce, Argel Gastelum-Arellanez, Armando Guerrero-Rangel, Robert Winkler, Silvia Valdés-Rodríguez

https://doi.org/10.7717/peerj.8991 PubMed 32351787

April 16, 2020

Distinct gene expression and secondary metabolite profiles in suppressor of prosystemin-mediated responses2 (spr2) tomato mutants having impaired mycorrhizal colonization

Kena Casarrubias-Castillo, Josaphat M. Montero-Vargas, Nicole Dabdoub-González, Robert Winkler, Norma A. Martinez-Gallardo, Julia Zañudo-Hernández, Hamlet Avilés-Arnaut, John P. Délano-Frier

https://doi.org/10.7717/peerj.8888 PubMed 32337100

May 8, 2017

Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar

Albert Krewinkel, Robert Winkler

https://doi.org/10.7717/peerj-cs.112

November 17, 2015

An evolving computational platform for biological mass spectrometry: workflows, statistics and data mining with MASSyPup64

Robert Winkler

https://doi.org/10.7717/peerj.1401 PubMed 26618079

February 13, 2019 - Version: 1

Distinct gene expression and secondary metabolite profiles for suboptimal mycorrhizal colonization in wild-type and the jasmonic acid deficient spr2 tomato mutant

Kena Casarrubias-Castillo, Josaphat M Montero-Vargas, Nicole Dabdoub-González, Robert Winkler, Norma A Martinez-Gallardo, Hamlet Aviles-Arnaut, John P Délano-Frier

https://doi.org/10.7287/peerj.preprints.27533v1

March 15, 2017 - Version: 2

Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar

Albert Krewinkel, Robert Winkler

https://doi.org/10.7287/peerj.preprints.2648v2

September 9, 2015 - Version: 1

An evolving computational platform for biological mass spectrometry: Work-flows, statistics and Data Mining with MASSyPup64

Robert Winkler

https://doi.org/10.7287/peerj.preprints.1359v1

Academic Editor on

September 17, 2025

Progress in applying CRISPR in pathogen detection

Yan Wu, Jimin Li, Rui Wang, Fengling Qiao, Jinlin Guo, Xu Jia

https://doi.org/10.7717/peerj-achem.36

August 11, 2025

Fuzzy evaluation and explainable machine learning for diagnosis of rheumatic and autoimmune diseases

Mohammed Fadhil Mahdi, Arezoo Jahani, Dhafar Hamed Abd

https://doi.org/10.7717/peerj-cs.3096

August 7, 2025

Noise injection into Freeman chain codes

Luka Lukač, Andrej Nerat, Damjan Strnad, Ivana Kolingerová, Borut Žalik

https://doi.org/10.7717/peerj-cs.3084

November 6, 2024

Identification of Meloidogyne panyuensis (Nematoda: Meloidogynidae) infecting Orah (Citrus reticulata Blanco) and its impact on rhizosphere microbial dynamics: Guangxi, China

Xiaoxiao Zhang, Wei Zhao, Yuming Lin, Bin Shan, Shanshan Yang

https://doi.org/10.7717/peerj.18495 PubMed 39525478

August 30, 2023

Identification and characterization of novel sesquiterpene synthases TPS9 and TPS12 from Aquilaria sinensis

Cuicui Yu, Shixi Gao, Mei Rong, Mengjun Xiao, Yanhong Xu, Jianhe Wei

https://doi.org/10.7717/peerj.15818 PubMed 37663295

August 7, 2023

Effects on the yield and fiber quality components of Bt cotton inoculated with Azotobacter chroococcum under elevated CO₂

Zhuo Li, Min Gao, Rujie Liu, Chunyan Chang, Feng Ge

https://doi.org/10.7717/peerj.15811 PubMed 37576495

June 23, 2023

Multi-user conflict resolution mechanisms for smart home environments

Mahmoud Mohammad Aljawarneh, Shahid Munir Shah, Lachhman Das Dhomeja, Yasir Arfat Malkani, Mahmoud Saleh Jawarneh

https://doi.org/10.7717/peerj-cs.1443

March 10, 2023

Natural durability of timber species exposed to xylophagous fungi in southern Durango, Mexico

Yolanda Ontiveros-Moreno, Serafín Colín-Urieta, José Javier Corral-Rivas, José Ciro Hernández-Díaz, José Ángel Prieto-Ruíz, Artemio Carrillo-Parra

https://doi.org/10.7717/peerj.14541 PubMed 36923506

March 2, 2023

Biocontrol endophytes Bacillus subtilis R31 influence the quality, transcriptome and metabolome of sweet corn

Mingwei Shao, Yanhong Chen, Qingyou Gong, Shuang Miao, Chunji Li, Yunhao Sun, Di Qin, Xiaojian Guo, Xun Yan, Ping Cheng, Guohui Yu

https://doi.org/10.7717/peerj.14967 PubMed 36883062

December 12, 2022

Widely targeted metabolite profiling of mango stem apex during floral induction by compond of mepiquat chloride, prohexadione-calcium and uniconazole

Fei Liang, Wentian Xu, Hongxia Wu, Bin Zheng, Qingzhi Liang, Yingzhi Li, Songbiao Wang

https://doi.org/10.7717/peerj.14458 PubMed 36530389

September 21, 2022

Effect of ZnO and CuO nanoparticles on the growth, nutrient absorption, and potential health risk of the seasonal vegetable Medicago polymorpha L.

Hongting Ji, Zhi Guo, Guodong Wang, Xin Wang, Hongjiang Liu

https://doi.org/10.7717/peerj.14038 PubMed 36164609

August 24, 2022

Changes and response mechanism of sugar and organic acids in fruits under water deficit stress

Wei-Feng Ma, Yan-Biao Li, Guo-Jie Nai, Guo-Ping Liang, Zong-Huan Ma, Bai-Hong Chen, Juan Mao

https://doi.org/10.7717/peerj.13691 PubMed 36039369

July 22, 2022

Spatial metabolomics shows contrasting phosphonolipid distributions in tissues of marine bivalves

Patric Bourceau, Dolma Michellod, Benedikt Geier, Manuel Liebeke

https://doi.org/10.7717/peerj-achem.21

July 5, 2022

Amino acids profiling and transcriptomic data integration demonstrates the dynamic regulation of amino acids synthesis in the leaves of Cyclocarya paliurus

Zhaokui Du, Weida Lin, Jinxing Zhu, Junmin Li

https://doi.org/10.7717/peerj.13689 PubMed 35811808

June 10, 2022

Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses

Yanyan Yu, Jinghao Xu, Chuanyin Wang, Yunning Pang, Lijian Li, Xinjie Tang, Bo Li, Qinghua Sun

https://doi.org/10.7717/peerj.13551 PubMed 35712547

May 13, 2022

A field test of forest canopy structure measurements with the CanopyCapture smartphone application

Christopher H. Lusk

https://doi.org/10.7717/peerj.13450 PubMed 35586134

May 11, 2022

QTL mapping and candidate gene analysis of low temperature germination in rice (Oryza sativa L.) using a genome wide association study

Feng Mao, Depeng Wu, Fangfang Lu, Xin Yi, Yujuan Gu, Bin Liu, Fuxia Liu, Tang Tang, Jianxin Shi, Xiangxiang Zhao, Lei Liu, Lilian Ji

https://doi.org/10.7717/peerj.13407 PubMed 35578671

April 8, 2022

Quantitative trait loci mapping and candidate gene analysis of stoma-related traits in wheat (Triticum aestivum L.) glumes

Ning Li, Fanfan Dong, Tongtong Liu, Jinwen Yang, Yugang Shi, Shuguang Wang, Daizhen Sun, Ruilian Jing

https://doi.org/10.7717/peerj.13262 PubMed 35419216

March 9, 2022

Distinct metabolic profiling is correlated with bisexual flowers formation resulting from exogenous ethephon induction in melon (Cucumis melo L.)

Siyu Fang, Yaqian Duan, Lanchun Nie, Wensheng Zhao, Jiahao Wang, Jiateng Zhao, Liping Zhao, Lei Wang

https://doi.org/10.7717/peerj.13088 PubMed 35287348

February 8, 2022

WildMinnie: compression of software-defined networking (SDN) rules with wildcard patterns

Hamed Khanmirza

https://doi.org/10.7717/peerj-cs.809

February 7, 2022

Empirical evaluation of an architectural technical debt index in the context of the Apache and ONAP ecosystems

Roberto Verdecchia, Ivano Malavolta, Patricia Lago, Ipek Ozkaya

https://doi.org/10.7717/peerj-cs.833

February 7, 2022

Micropropagation of pokeweed (Phytolacca americana L.) and comparison of phenolic, flavonoid content, and antioxidant activity between pokeweed callus and other parts

Attachai Trunjaruen, Prathan Luecha, Worasitikulya Taratima

https://doi.org/10.7717/peerj.12892 PubMed 35186483

December 22, 2021

A review of starch biosynthesis in cereal crops and its potential breeding applications in rice (Oryza Sativa L.)

Ruiqing Li, Wenyin Zheng, Meng Jiang, Huali Zhang

https://doi.org/10.7717/peerj.12678 PubMed 35036154

November 30, 2021

Stress-regulated elements in Lotus spp., as a possible starting point to understand signalling networks and stress adaptation in legumes

Ana B. Menéndez, Oscar Adolfo Ruiz

https://doi.org/10.7717/peerj.12110 PubMed 34909267

July 22, 2021

Introductory programming course: review and future implications

Uzma Omer, Muhammad Shoaib Farooq, Adnan Abid

https://doi.org/10.7717/peerj-cs.647

July 20, 2021

Inheritance of heat tolerance in perennial ryegrass (Lolium perenne, Poaceae): evidence from progeny array analysis

Wagdi S. Soliman, Ahmed M. Abbas, Stephen J. Novak, Masahiro Fujimori, Kazuhiro Tase, Shu-ichi Sugiyama

https://doi.org/10.7717/peerj.11782 PubMed 34322326

June 22, 2021

Characterization of auxin transporter AUX, PIN and PILS gene families in pineapple and evaluation of expression profiles during reproductive development and under abiotic stresses

Heming Zhao, Yan Maokai, Han Cheng, Mingliang Guo, Yanhui Liu, Lulu Wang, Shi Chao, Minqian Zhang, Linyi Lai, Yuan Qin

https://doi.org/10.7717/peerj.11410 PubMed 34221708

June 18, 2021

Compi: a framework for portable and reproducible pipelines

Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña

https://doi.org/10.7717/peerj-cs.593

June 8, 2021

Exploring the differential stages of the pigment metabolism by pre-harvest bagging and post-harvest ethylene de-greening of Eureka lemon peel

Anjun Chen, Lu Liu, Xiaoping Liu, Yunyun Fu, Jie Li, Jianglin Zhao, Xiaoyan Hou

https://doi.org/10.7717/peerj.11504 PubMed 34164234

March 19, 2021

Enzymatic and transcriptomic analysis reveals the essential role of carbohydrate metabolism in freesia (Freesia hybrida) corm formation

Li Ma, Suqin Ding, Xueqing Fu, Zi Yan, Dongqin Tang

https://doi.org/10.7717/peerj.11078 PubMed 33777537

December 11, 2020

Exogenous melatonin improves salt stress adaptation of cotton seedlings by regulating active oxygen metabolism

Dan Jiang, Bin Lu, Liantao Liu, Wenjing Duan, Li Chen, Jin Li, Ke Zhang, Hongchun Sun, Yongjiang Zhang, Hezhong Dong, Cundong Li, Zhiying Bai

https://doi.org/10.7717/peerj.10486 PubMed 33365206

October 27, 2020

Co-application of bio-fertilizer and salicylic acid improves growth, photosynthetic pigments and stress tolerance in wheat under drought stress

Ammar Azmat, Humaira Yasmin, Muhammad Nadeem Hassan, Asia Nosheen, Rabia Naz, Muhammad Sajjad, Noshin Ilyas, Malik Nadeem Akhtar

https://doi.org/10.7717/peerj.9960 PubMed 33194369

October 21, 2020

DNMSO; an ontology for representing de novo sequencing results from Tandem-MS data

Savaş Takan, Jens Allmer

https://doi.org/10.7717/peerj.10216 PubMed 33150092

October 6, 2020

Increased photosynthesis and grain yields in maize grown with less irrigation water combined with density adjustment in semiarid regions

Donghua Liu, Qianmin Jia, Juan Li, Peng Zhang, Xiaolong Ren, Zhikuan Jia

https://doi.org/10.7717/peerj.9959 PubMed 33083115

August 31, 2020

Gametophytic self-incompatibility in Andean capuli (Prunus serotina subsp. capuli): allelic diversity at the S-RNase locus influences normal pollen-tube formation during fertilization

Milton Gordillo-Romero, Lisa Correa-Baus, Verónica Baquero-Méndez, María de Lourdes Torres, Carlos Vintimilla, Jose Tobar, Andrés F. Torres

https://doi.org/10.7717/peerj.9597 PubMed 32944417

August 27, 2020

Quantitative proteomics suggests changes in the carbohydrate metabolism of maize in response to larvae of the belowground herbivore Holotrichia parallela

Yu Pan, Shiwen Zhao, Zhun Wang, Xiao Wang, Xinxin Zhang, Yunshuo Lee, Jinghui Xi

https://doi.org/10.7717/peerj.9819 PubMed 32913681

August 21, 2020

Chemotype classification and biomarker screening of male Eucommia ulmoides Oliv. flower core collections using UPLC-QTOF/MS-based non-targeted metabolomics

Panfeng Liu, Lu Wang, Qingxin Du, Hongyan Du

https://doi.org/10.7717/peerj.9786 PubMed 32884862

August 18, 2020

Transcriptomic analysis reveals ethylene signal transduction genes involved in pistil development of pumpkin

Qingfei Li, Li Zhang, Feifei Pan, Weili Guo, Bihua Chen, Helian Yang, Guangyin Wang, Xinzheng Li

https://doi.org/10.7717/peerj.9677 PubMed 32879792

July 6, 2020

Melatonin improves the germination rate of cotton seeds under drought stress by opening pores in the seed coat

Yandan Bai, Shuang Xiao, Zichen Zhang, Yongjiang Zhang, Hongchun Sun, Ke Zhang, Xiaodan Wang, Zhiying Bai, Cundong Li, Liantao Liu

https://doi.org/10.7717/peerj.9450 PubMed 32704446

June 4, 2020

Contributions of Latin American researchers in the understanding of the novel coronavirus outbreak: a literature review

Karen Y. Fiesco-Sepúlveda, Luis Miguel Serrano-Bermúdez

https://doi.org/10.7717/peerj.9332 PubMed 32547890

April 8, 2020

Proteomic variations after short-term heat shock treatment reveal differentially expressed proteins involved in early microspore embryogenesis in cabbage (Brassica oleracea)

Henan Su, Guo Chen, Limei Yang, Yangyong Zhang, Yong Wang, Zhiyuan Fang, Honghao Lv

https://doi.org/10.7717/peerj.8897 PubMed 32337101

February 27, 2020

Lactoferrin quantification in cattle faeces by ELISA

Andrew S. Cooke, Kathryn A. Watt, Greg F. Albery, Eric R. Morgan, Jennifer A.J. Dungait

https://doi.org/10.7717/peerj.8631 PubMed 32368415

February 7, 2020

Survival of side grafts with scions from pure species Pinus engelmannii Carr. and the P. engelmannii × P. arizonica Engelm. var. arizonica hybrid

Alberto Pérez-Luna, Christian Wehenkel, José Ángel Prieto-Ruíz, Javier López-Upton, José Ciro Hernández-Díaz

https://doi.org/10.7717/peerj.8468 PubMed 32071810

December 20, 2019

Toward insights on determining factors for high activity in antimicrobial peptides via machine learning

Hao Li, Chanin Nantasenamat

https://doi.org/10.7717/peerj.8265 PubMed 31875156

November 6, 2019

Spatial genetic structure in Pinus cembroides Zucc. at population and landscape levels in central and northern Mexico

Luis C. García-Zubia, Javier Hernández-Velasco, José C. Hernández-Díaz, Sergio L. Simental-Rodríguez, Carlos A. López-Sánchez, Carmen Z. Quiñones-Pérez, Artemio Carrillo-Parra, Christian Wehenkel

https://doi.org/10.7717/peerj.8002 PubMed 31844562

October 16, 2019

Transcriptome analysis of the induction of somatic embryogenesis in Coffea canephora and the participation of ARF and Aux/IAA genes

Ana O. Quintana-Escobar, Geovanny I. Nic-Can, Rosa María Galaz Avalos, Víctor M. Loyola-Vargas, Elsa Gongora-Castillo

https://doi.org/10.7717/peerj.7752 PubMed 31637116

October 14, 2019

Genome-wide identification and expression analysis of the WRKY genes in sugar beet (Beta vulgaris L.) under alkaline stress

Guo-Qiang Wu, Zhi-Qiang Li, Han Cao, Jin-Long Wang

https://doi.org/10.7717/peerj.7817 PubMed 31632850

October 8, 2019

Effects of ferulic acid esterase-producing Lactobacillus fermentum and cellulase additives on the fermentation quality and microbial community of alfalfa silage

Rina Su, Kuikui Ni, Tianwei Wang, Xiaopan Yang, Jie Zhang, Yayong Liu, Weixiong Shi, Liu Yan, Chen Jie, Jin Zhong

https://doi.org/10.7717/peerj.7712 PubMed 31608168

October 8, 2019

Exogenous application of nitric oxide donors regulates short-term flooding stress in soybean

Muhammad Aaqil Khan, Abdul Latif Khan, Qari Muhammad Imran, Sajjad Asaf, Sang-Uk Lee, Byung-Wook Yun, Muhammad Hamayun, Tae-Han Kim, In-Jung Lee

https://doi.org/10.7717/peerj.7741 PubMed 31608169

July 17, 2019

Nutritional assessment, phytochemical composition and antioxidant analysis of the pulp and seed of medjool date grown in Mexico

Ricardo Salomón-Torres, Noé Ortiz-Uribe, Benjamín Valdez-Salas, Navor Rosas-González, Conrado García-González, Daniel Chávez, Iván Córdova-Guerrero, Laura Díaz-Rubio, María del Pilar Haro-Vázquez, José Luis Mijangos-Montiel, Antonio Morales-Maza, Padmanabhan Mahadevan, Robert Krueger

https://doi.org/10.7717/peerj.6821 PubMed 31360620

May 13, 2019

The effects of change decomposition on code review—a controlled experiment

Marco di Biase, Magiel Bruntink, Arie van Deursen, Alberto Bacchelli

https://doi.org/10.7717/peerj-cs.193

February 20, 2019

Yeasts producing zeatin

Rostislav A. Streletskii, Aleksey V. Kachalkin, Anna M. Glushakova, Andrey M. Yurkov, Vladimir V. Demin

https://doi.org/10.7717/peerj.6474 PubMed 30809453

November 23, 2018

Morpho-histological development of the somatic embryos of Typha domingensis

Guadalupe Hernández-Piedra, Violeta Ruiz-Carrera, Alberto J. Sánchez, Arlette Hernández-Franyutti, Alfonso Azpeitia-Morales

https://doi.org/10.7717/peerj.5952 PubMed 30505633

April 6, 2018

Surface display for metabolic engineering of industrially important acetic acid bacteria

Marshal Blank, Paul Schweiger

https://doi.org/10.7717/peerj.4626 PubMed 29637028

April 4, 2018

Predicting Pinus monophylla forest cover in the Baja California Desert by remote sensing

Jonathan G. Escobar-Flores, Carlos A. Lopez-Sanchez, Sarahi Sandoval, Marco A. Marquez-Linares, Christian Wehenkel

https://doi.org/10.7717/peerj.4603 PubMed 29637026

November 30, 2017

Examining publication bias—a simulation-based evaluation of statistical tests on publication bias

Andreas Schneck

https://doi.org/10.7717/peerj.4115 PubMed 29204324

August 28, 2017

DOSCHEDA: a web application for interactive chemoproteomics data analysis

Bruno Contrino, Eric Miele, Ronald Tomlinson, M. Paola Castaldi, Piero Ricchiuto

https://doi.org/10.7717/peerj-cs.129

July 3, 2017

Power1D: a Python toolbox for numerical power estimates in experiments involving one-dimensional continua

Todd C. Pataky

https://doi.org/10.7717/peerj-cs.125

June 12, 2017

Discrimination of Picea chihuahuana Martinez populations on the basis of climatic, edaphic, dendrometric, genetic and population traits

Iliana Karina Dominguez-Guerrero, Samantha del Rocío Mariscal-Lucero, José Ciro Hernández-Díaz, Berthold Heinze, José Ángel Prieto-Ruiz, Christian Wehenkel

https://doi.org/10.7717/peerj.3452 PubMed 28626616

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

April 10, 2019

MetaMSD: meta analysis for mass spectrometry data

So Young Ryu, George A. Wendt

https://doi.org/10.7717/peerj.6699 PubMed 30993040

3 Answers

accepted What happened to scholarlymarkdown.com?

accepted This paper in other formats

accepted What is a 'seminar script'?