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Scientific Computing and Simulation at PeerJ

Latest articles

Adaptive divergence for rapid adversarial optimization
Maxim Borisyak, Tatiana Gaintseva, Andrey Ustyuzhanin
SANgo: a storage infrastructure simulator with reinforcement learning support
Kenenbek Arzymatov, Andrey Sapronov, Vladislav Belavin, Leonid Gremyachikh, Maksim Karpov, Andrey Ustyuzhanin, Ivan Tchoub, Artem Ikoev
Implementation of adaptive integration method for free energy calculations in molecular systems
Christopher A. Mirabzadeh, F. Marty Ytreberg
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Implementation of adaptive integration method for free energy calculations in molecular systems
Christopher A Mirabzadeh, F. Marty Ytreberg
preprint
12 Grand Challenges in Single-Cell Data Science
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J McCarthy, Stephanie C Hicks, Mark D Robinson, Catalina A Vallejos, Niko Beerenwinkel, Kieran R Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M Kiełbasa, Jan O Korbel, Alexey M Kozlov, Tzu-Hao Kuo, Boudewijn PF Lelieveldt, Ion I Mandoiu, John C Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Łukasz Rączkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J Theis, Huan Yang, Alex Zelikovsky, Alice C McHardy, Benjamin J Raphael, Sohrab P Shah, Alexander Schönhuth
preprint
Towards a quantitative model of epidemics during conflicts
Soumya Banerjee
preprint
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Widely read

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
44,807 views · 8,168 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
25,020 views · 13,013 downloads
Journal of Open Source Software (JOSS): design and first-year review
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob T. Vanderplas
9,527 views · 1,228 downloads
Sustainable computational science: the ReScience initiative
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C.Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael N. Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Daniel McGlinn, Christoph Metzner, Owen Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Joseph Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
6,036 views · 808 downloads
DAE Tools: equation-based object-oriented modelling, simulation and optimisation software
Dragan D. Nikolić
5,142 views · 1,315 downloads

Editors' picks

Adaptive divergence for rapid adversarial optimization
Maxim Borisyak, Tatiana Gaintseva, Andrey Ustyuzhanin
Verifiability in computer-aided research: the role of digital scientific notations at the human-computer interface
Konrad Hinsen

Recently cited

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
346 citations · 44,807 views · 8,168 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
207 citations · 25,020 views · 13,013 downloads
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This Scientific Computing and Simulation Overlay is a subset of the peer-reviewed articles and rapid preprints found in PeerJ Computer Science and PeerJ Preprints, respectively.

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Practical Data Science for Stats
‘Methods, tools & platforms for Personalized Medicine in the Big Data Era' NETTAB 2017 Workshop Collection.
Open Source Geospatial Research & Education Symposium (OGRS2016)
Tenth annual “Bioinformatics and Computational Biology in Campania” Collection
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