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Scientific Computing and Simulation at PeerJ

Latest articles and preprints

An algorithm for calculating top-dimensional bounding chains
J. Frederico Carvalho, Mikael Vejdemo-Johansson, Danica Kragic, Florian T. Pokorny
Computing the sparse matrix vector product using block-based kernels without zero padding on processors with AVX-512 instructions
AutoWIG: automatic generation of python bindings for C++ libraries
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Quantifying the tape of life: Ancestry-based metrics provide insights and intuition about evolutionary dynamics
preprint
Virtual and remote laboratories augment self learning and interactions: Development, deployment and assessments with direct and online feedback
preprint
Digital scientific notations as a human-computer interface in computer-aided research
preprint
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Widely read

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
26,033 views · 4,368 downloads
SymPy: symbolic computing in Python
15,941 views · 3,442 downloads
DAE Tools: equation-based object-oriented modelling, simulation and optimisation software
3,477 views · 994 downloads
Sustainable computational science: the ReScience initiative
3,770 views · 364 downloads
Journal of Open Source Software (JOSS): design and first-year review
3,446 views · 394 downloads

Editors' picks

Journal of Open Source Software (JOSS): design and first-year review
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob T. Vanderplas
Sustainable computational science: the ReScience initiative
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C.Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael N. Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Daniel McGlinn, Christoph Metzner, Owen Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Joseph Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito

Recently cited

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
54 citations · 26,033 views · 4,368 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
45 citations · 15,941 views · 3,442 downloads
About this subject overlay

This Scientific Computing and Simulation Overlay is a subset of the peer-reviewed articles and rapid preprints found in PeerJ Computer Science and PeerJ Preprints, respectively.

Subject pages or "Overlays" are like filtered subject journals helping you discover your community within the wider multi-disciplinary PeerJ venues.

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Practical Data Science for Stats
‘Methods, tools & platforms for Personalized Medicine in the Big Data Era' NETTAB 2017 Workshop Collection.
Open Source Geospatial Research & Education Symposium (OGRS2016)
Tenth annual “Bioinformatics and Computational Biology in Campania” Collection
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