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Scientific Computing and Simulation at PeerJ

Latest articles and preprints

Tools4MSP: an open source software package to support Maritime Spatial Planning
Stefano Menegon, Alessandro Sarretta, Daniel Depellegrin, Giulio Farella, Chiara Venier, Andrea Barbanti
An integrated platform for intuitive mathematical programming modeling using LaTeX
Parallelisation of equation-based simulation programs on heterogeneous computing systems
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Practical challenges for biomedical modeling using HPC
preprint
The MODES toolbox: Measurements of Open-ended Dynamics in Evolving Systems
preprint
Phylogenetic analysis of software evolution, a case study: VE&MINT
preprint
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Widely read

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
29,762 views · 5,024 downloads
SymPy: symbolic computing in Python
18,041 views · 4,781 downloads
Journal of Open Source Software (JOSS): design and first-year review
4,541 views · 556 downloads
DAE Tools: equation-based object-oriented modelling, simulation and optimisation software
3,907 views · 1,041 downloads
Sustainable computational science: the ReScience initiative
4,246 views · 457 downloads

Editors' picks

Verifiability in computer-aided research: the role of digital scientific notations at the human-computer interface
Konrad Hinsen
Journal of Open Source Software (JOSS): design and first-year review
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob T. Vanderplas

Recently cited

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
78 citations · 29,762 views · 5,024 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
70 citations · 18,041 views · 4,781 downloads
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This Scientific Computing and Simulation Overlay is a subset of the peer-reviewed articles and rapid preprints found in PeerJ Computer Science and PeerJ Preprints, respectively.

Subject pages or "Overlays" are like filtered subject journals helping you discover your community within the wider multi-disciplinary PeerJ venues.

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Practical Data Science for Stats
‘Methods, tools & platforms for Personalized Medicine in the Big Data Era' NETTAB 2017 Workshop Collection.
Open Source Geospatial Research & Education Symposium (OGRS2016)
Tenth annual “Bioinformatics and Computational Biology in Campania” Collection
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