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Scientific Computing and Simulation at PeerJ

Latest articles

An efficient and secure technique for image steganography using a hash function
Zahid Iqbal Nezami, Hamid Ali, Muhammad Asif, Hanan Aljuaid, Isma Hamid, Zulfiqar Ali
FCMpy: a python module for constructing and analyzing fuzzy cognitive maps
Samvel Mkhitaryan, Philippe Giabbanelli, Maciej K Wozniak, Gonzalo Nápoles, Nanne De Vries, Rik Crutzen
Traffic flow simulation of modified cellular automata model based on producer-consumer algorithm
Xuefeng Deng, Yi Shao, Jiaxin Song, Hui Wu
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Implementation of adaptive integration method for free energy calculations in molecular systems
Christopher A Mirabzadeh, F. Marty Ytreberg
preprint
12 Grand Challenges in Single-Cell Data Science
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J McCarthy, Stephanie C Hicks, Mark D Robinson, Catalina A Vallejos, Niko Beerenwinkel, Kieran R Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M Kiełbasa, Jan O Korbel, Alexey M Kozlov, Tzu-Hao Kuo, Boudewijn PF Lelieveldt, Ion I Mandoiu, John C Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Łukasz Rączkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J Theis, Huan Yang, Alex Zelikovsky, Alice C McHardy, Benjamin J Raphael, Sohrab P Shah, Alexander Schönhuth
preprint
Towards a quantitative model of epidemics during conflicts
Soumya Banerjee
preprint
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Widely read

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
65,133 views · 16,482 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
35,008 views · 24,027 downloads
Journal of Open Source Software (JOSS): design and first-year review
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob T. Vanderplas
13,947 views · 2,512 downloads
Sustainable computational science: the ReScience initiative
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C.Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael N. Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Daniel McGlinn, Christoph Metzner, Owen Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Jemma Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
9,252 views · 1,318 downloads
DAE Tools: equation-based object-oriented modelling, simulation and optimisation software
Dragan D. Nikolić
6,391 views · 2,285 downloads

Editors' picks

Automated prioritizing heuristics for parallel task graph scheduling in heterogeneous computing
Clément Flint, Ludovic Paillat, Bérenger Bramas
A survey of the state of the practice for research software in the United States
Jeffrey C. Carver, Nic Weber, Karthik Ram, Sandra Gesing, Daniel S. Katz

Recently cited

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
1,159 citations · 65,133 views · 16,482 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
561 citations · 35,008 views · 24,027 downloads
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This Scientific Computing and Simulation Overlay is a subset of the peer-reviewed articles and rapid preprints found in PeerJ Computer Science and PeerJ Preprints, respectively.

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PeerJ Computer Science - Tools, Packages and Databases
Coronaviruses and Viral Respiratory Infections
Practical Data Science for Stats
‘Methods, tools & platforms for Personalized Medicine in the Big Data Era' NETTAB 2017 Workshop Collection.
Open Source Geospatial Research & Education Symposium (OGRS2016)
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