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Scientific Computing and Simulation at PeerJ

Latest articles

Mathematical COVID-19 model with vaccination: a case study in Saudi Arabia
Abeer D. Algarni, Aws Ben Hamed, Monia Hamdi, Hela Elmannai, Souham Meshoul
A survey of the state of the practice for research software in the United States
Jeffrey C. Carver, Nic Weber, Karthik Ram, Sandra Gesing, Daniel S. Katz
Techniques and countermeasures for preventing insider threats
Rakan A. Alsowail, Taher Al-Shehari
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Implementation of adaptive integration method for free energy calculations in molecular systems
Christopher A Mirabzadeh, F. Marty Ytreberg
preprint
12 Grand Challenges in Single-Cell Data Science
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J McCarthy, Stephanie C Hicks, Mark D Robinson, Catalina A Vallejos, Niko Beerenwinkel, Kieran R Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M Keizer, Indu Khatri, Szymon M Kiełbasa, Jan O Korbel, Alexey M Kozlov, Tzu-Hao Kuo, Boudewijn PF Lelieveldt, Ion I Mandoiu, John C Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Łukasz Rączkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J Theis, Huan Yang, Alex Zelikovsky, Alice C McHardy, Benjamin J Raphael, Sohrab P Shah, Alexander Schönhuth
preprint
Towards a quantitative model of epidemics during conflicts
Soumya Banerjee
preprint
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Widely read

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
62,366 views · 15,273 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
33,346 views · 22,825 downloads
Journal of Open Source Software (JOSS): design and first-year review
Arfon M. Smith, Kyle E. Niemeyer, Daniel S. Katz, Lorena A. Barba, George Githinji, Melissa Gymrek, Kathryn D. Huff, Christopher R. Madan, Abigail Cabunoc Mayes, Kevin M. Moerman, Pjotr Prins, Karthik Ram, Ariel Rokem, Tracy K. Teal, Roman Valls Guimera, Jacob T. Vanderplas
13,455 views · 2,404 downloads
Sustainable computational science: the ReScience initiative
Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C.Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael N. Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Daniel McGlinn, Christoph Metzner, Owen Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Jemma Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito
8,728 views · 1,273 downloads
DAE Tools: equation-based object-oriented modelling, simulation and optimisation software
Dragan D. Nikolić
6,258 views · 2,142 downloads

Editors' picks

A survey of the state of the practice for research software in the United States
Jeffrey C. Carver, Nic Weber, Karthik Ram, Sandra Gesing, Daniel S. Katz
An evolutionary algorithm for multi-objective optimization of freshwater consumption in textile dyeing industry
Ihsan Elahi, Hamid Ali, Muhammad Asif, Kashif Iqbal, Yazeed Ghadi, Eatedal Alabdulkreem

Recently cited

Probabilistic programming in Python using PyMC3
John Salvatier, Thomas V. Wiecki, Christopher Fonnesbeck
1,001 citations · 62,366 views · 15,273 downloads
SymPy: symbolic computing in Python
Aaron Meurer, Christopher P. Smith, Mateusz Paprocki, Ondřej Čertík, Sergey B. Kirpichev, Matthew Rocklin, AMiT Kumar, Sergiu Ivanov, Jason K. Moore, Sartaj Singh, Thilina Rathnayake, Sean Vig, Brian E. Granger, Richard P. Muller, Francesco Bonazzi, Harsh Gupta, Shivam Vats, Fredrik Johansson, Fabian Pedregosa, Matthew J. Curry, Andy R. Terrel, Štěpán Roučka, Ashutosh Saboo, Isuru Fernando, Sumith Kulal, Robert Cimrman, Anthony Scopatz
471 citations · 33,346 views · 22,825 downloads
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This Scientific Computing and Simulation Overlay is a subset of the peer-reviewed articles and rapid preprints found in PeerJ Computer Science and PeerJ Preprints, respectively.

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PeerJ Computer Science - Tools, Packages and Databases
Coronaviruses and Viral Respiratory Infections
Practical Data Science for Stats
‘Methods, tools & platforms for Personalized Medicine in the Big Data Era' NETTAB 2017 Workshop Collection.
Open Source Geospatial Research & Education Symposium (OGRS2016)
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