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January 2016

Table of Contents - PeerJ Preprints

January 28, 2016 - Version: 1

Probabilistic programming in Python using PyMC3

John Salvatier, Thomas V Wiecki, Christopher Fonnesbeck

https://doi.org/10.7287/peerj.preprints.1686v1

January 22, 2016 - Version: 2

Sentieon DNA pipeline for variant detection - Software-only solution, over 20× faster than GATK 3.3 with identical results

Jessica A. Weber, Rafael Aldana, Brendan D. Gallagher, Jeremy S. Edwards

https://doi.org/10.7287/peerj.preprints.1672v2

January 21, 2016 - Version: 1

Metagenomic analysis exploring taxonomic and functional diversity of soil microbial communities in Chilean vineyards and surrounding native forests

Luis E Castañeda, Olga Barbosa

https://doi.org/10.7287/peerj.preprints.1661v1

January 6, 2016 - Version: 1

Integration of biochar and chemical fertilizer to enhance quality of soil and wheat crop (Triticum aestivum L.)

Usman Khalid Chaudhry, Salman Shahzad, Muhammad Nadir Naqqash, Abdul Saboor, Sana Yaqoob, Muhammad Salim, Muhammad Khalid

https://doi.org/10.7287/peerj.preprints.1631v1

January 23, 2016 - Version: 1

The wings before the bird: an evaluation of flapping-based locomotory hypotheses in bird antecedents

T. Alexander Dececchi, Hans CE Larsson, Michael B Habib

https://doi.org/10.7287/peerj.preprints.1676v1

January 25, 2016 - Version: 4

Problems in using p-curve analysis and text-mining to detect rate of p-hacking and evidential value

Dorothy V Bishop, Paul A Thompson

https://doi.org/10.7287/peerj.preprints.1266v4

January 21, 2016 - Version: 1

Bayesian multinomial ordered categorical response model for the analysis of length of hospital stay

Lawrence N Kazembe

https://doi.org/10.7287/peerj.preprints.1663v1

January 21, 2016 - Version: 2

Green software engineering: the curse of methodology

Abram Hindle

https://doi.org/10.7287/peerj.preprints.1470v2

January 21, 2016 - Version: 1

Sequencing and characterization of mitochondrial DNA genome for Brama japonica (Perciformes: Bramidae) with phylogenetic consideration

Fenfang Chen, Hongyu Ma, Chunyan Ma, Heng Zhang, Mengdi Zhao, Yongyong Meng, Hongqing Wei, Lingbo Ma

https://doi.org/10.7287/peerj.preprints.1667v1

January 23, 2016 - Version: 1

The 2013-2016 West African Ebola virus outbreak: Local contexts and future issues

Francesco Cecon, Peter F McGrath

https://doi.org/10.7287/peerj.preprints.1678v1

January 13, 2016 - Version: 1

DNA barcoding and taxonomy: dark taxa and dark texts

Roderic D M Page

https://doi.org/10.7287/peerj.preprints.1649v1

January 13, 2016 - Version: 2

Distributions of p-values smaller than .05 in Psychology: What is going on?

Chris HJ Hartgerink, Robbie CM van Aert, Michèle B Nuijten, Jelte M. Wicherts, Marcel ALM van Assen

https://doi.org/10.7287/peerj.preprints.1642v2

January 26, 2016 - Version: 1

Evaluation of morphometric characters of honeybee (Apis mellifera L.) populations in Nigeria

Usman H Dukku

https://doi.org/10.7287/peerj.preprints.1680v1

January 28, 2016 - Version: 1

Multiple dimensions of bacterial diversity unrelated to functioning, stability and multifunctionality

Fabian Roger, Stefan Bertilsson, Silke Langenheder, Omneya Ahmed, Lars Gamfeldt

https://doi.org/10.7287/peerj.preprints.1688v1

January 6, 2016 - Version: 1

Natural occurrence of the entomopathogenic fungi Beauveria bassiana as a vertically transmitted endophyte of Pinus radiata and its effect on above- and below-ground insect pests

Marie-Caroline Lefort, Aimee C McKinnon, Tracey L Nelson, Travis R Glare

https://doi.org/10.7287/peerj.preprints.1632v1

January 9, 2016 - Version: 1

Immunohistochemistry for the detection of neural and inflammatory cells in equine brain tissue

Gretchen H Delcambre, Junjie Liu, Jenna M Herrington, Kelsey Vallario, Maureen T Long

https://doi.org/10.7287/peerj.preprints.1641v1

January 21, 2016 - Version: 1

Selenium uptake, toxicity and reduction in Flammulina velutipes supplied with selenite

Jipeng Wang, Bo Wang, Dan Zhang, Yanhong Wu

https://doi.org/10.7287/peerj.preprints.1660v1

January 6, 2016 - Version: 3

Direct numerical simulation of transitional pulsatile stenotic flow using Lattice Boltzmann Method

Kartik Jain

https://doi.org/10.7287/peerj.preprints.1548v3

January 17, 2016 - Version: 1

Acoustic monitoring indicates a positive relationship between calling frequency and spawning in captive spotted seatrout (Cynoscion nebulosus)

Eric W Montie, Matt Hoover, Chris Kehrer, Justin Yost, Karl Brenkert, Timothy O'Donnell, Mike R Denson

https://doi.org/10.7287/peerj.preprints.1656v1

January 27, 2016 - Version: 1

Effect of the Blowflies (Diptera: Calliphoridae) on the size and weight of Mango (Mangifera indica L.)

Shafqat Saeed, Muhammad Nadir Naqqash, Waqar Jaleel, Qamar Saeed, Fozia Ghouri

https://doi.org/10.7287/peerj.preprints.1683v1

January 22, 2016 - Version: 2

A trait-based approach to bacterial biofilms in soil

Jay T Lennon, Brent K Lehmkuhl

https://doi.org/10.7287/peerj.preprints.1637v2

January 21, 2016 - Version: 1

Preliminary characterization of little brown bats (Myotis lucifugus) immune MHC II DRB alleles using next-generation sequencing

Jonathan M. Palmer, Leah K. Berkman, Paula E Marquardt, Deahn M. Donner, Michelle A. Jusino, Daniel L. Lindner

https://doi.org/10.7287/peerj.preprints.1662v1

January 7, 2016 - Version: 1

DNA barcode data accurately identify higher taxa

Jonathan A Coddington, Ingi Agnarsson, Ren-Chung Cheng, Klemen Čandek, Amy Driskell, Holger Frick, Matjaž Gregorič, Rok Kostanjšek, Christian Kropf, Matthew Kweskin, Tjaša Lokovšek, Miha Pipan, Nina Vidergar, Matjaž Kuntner

https://doi.org/10.7287/peerj.preprints.1633v1

January 21, 2016 - Version: 1

A computational analysis of Salt Overly Sensitive 1 homologs in halophytes and glycophytes

Cherin Kim, Ray Bressan

https://doi.org/10.7287/peerj.preprints.1668v1

January 13, 2016 - Version: 2

What doesn’t kill them makes them stronger: An association between elongation factor 1-α overdominance in the sea star Pisaster ochraceus and "sea star wasting disease”

John P. Wares, Lauren M Schiebelhut

https://doi.org/10.7287/peerj.preprints.1464v2

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