PeerJ Preprints: Marine Biologyhttps://peerj.com/preprints/index.atom?journal=peerj&subject=1800Marine Biology articles published in PeerJ PreprintsDiscrete stochastic marine metapopulation disease modelhttps://peerj.com/preprints/264542019-11-282019-11-28Gorka BidegainTal Ben-Horin
Some marine microparasitic pathogens can survive several months in the water column to make contact with or to be absorbed or filtered by hosts. Once inside, pathogens invade the host if they find suitable conditions for reproduction. This transmission from the environment occurs via pathogens released from infected and dead infected animals. Some recent modeling studies concentrated on the disease dynamic imposed by this complex interaction between population and water column at the host-pathogen level in single populations. However, only when a marine disease can be understood at the metapopulation scale effective approaches to management will become routinely achievable. The discrete-time disease model in this paper investigates both spatial and temporal dynamics of hosts and waterborne pathogens in a metapopulation system of three patches. This system with a patch providing infective particles and susceptible and infected individuals by dispersal tries to imitate the effect of current forces in the ocean on the passive dispersal of organisms. The model detects behaviours that are not present in single population continuous-time and deterministic models.
Some marine microparasitic pathogens can survive several months in the water column to make contact with or to be absorbed or filtered by hosts. Once inside, pathogens invade the host if they find suitable conditions for reproduction. This transmission from the environment occurs via pathogens released from infected and dead infected animals. Some recent modeling studies concentrated on the disease dynamic imposed by this complex interaction between population and water column at the host-pathogen level in single populations. However, only when a marine disease can be understood at the metapopulation scale effective approaches to management will become routinely achievable. The discrete-time disease model in this paper investigates both spatial and temporal dynamics of hosts and waterborne pathogens in a metapopulation system of three patches. This system with a patch providing infective particles and susceptible and infected individuals by dispersal tries to imitate the effect of current forces in the ocean on the passive dispersal of organisms. The model detects behaviours that are not present in single population continuous-time and deterministic models.First confirmation of the shell-boring oyster parasite Polydora websteri (Polychaeta: Spionidae) in Washington State, USAhttps://peerj.com/preprints/276212019-11-212019-11-21Julieta MartinelliHeather LopesLorenz HauserIsadora Jimenez-HidalgoTeri L KingJacqueline Padilla-GaminoPaul RawsonLaura SpencerJason WilliamsChelsea Wood
Invasions by the spionid polychaete Polydora websteri have resulted in the collapse of oyster aquaculture industries in Australia, New Zealand, and Hawaii. These worms burrow into the shells of bivalves, creating unsightly mud blisters that are unappealing to consumers and, when nicked during shucking, release mud and detritus that can foul oyster meats. Recent sightings of mud blisters on the shells of Pacific oysters (Crassostrea gigas) in Puget Sound, Washington, suggest a new spionid polychaete invasion. To determine the identity of the polychaete causing these mud blisters, we obtained Pacific oysters from two locations in Puget Sound and examined them for blisters and burrows associated with spionid infection. We then extracted polychaetes and sequenced mitochondrial (cytochrome c oxidase I [COI]) and nuclear (18S rRNA) genes to obtain species-level identifications for a subset of these worms. Our data confirm that P. websteri is present in mud blisters of Puget Sound oysters, constituting the first confirmed record of this species in Washington State. The presence of non-native P. websteri could threaten the sustainability of oyster aquaculture in Washington, which currently produces more shellfish than any other US state.
Invasions by the spionid polychaete Polydora websteri have resulted in the collapse of oyster aquaculture industries in Australia, New Zealand, and Hawaii. These worms burrow into the shells of bivalves, creating unsightly mud blisters that are unappealing to consumers and, when nicked during shucking, release mud and detritus that can foul oyster meats. Recent sightings of mud blisters on the shells of Pacific oysters (Crassostrea gigas) in Puget Sound, Washington, suggest a new spionid polychaete invasion. To determine the identity of the polychaete causing these mud blisters, we obtained Pacific oysters from two locations in Puget Sound and examined them for blisters and burrows associated with spionid infection. We then extracted polychaetes and sequenced mitochondrial (cytochrome c oxidase I [COI]) and nuclear (18S rRNA) genes to obtain species-level identifications for a subset of these worms. Our data confirm that P. websteri is present in mud blisters of Puget Sound oysters, constituting the first confirmed record of this species in Washington State. The presence of non-native P. websteri could threaten the sustainability of oyster aquaculture in Washington, which currently produces more shellfish than any other US state.Comparative studies of Echinometra mathaei species complex (Echinoidea: Camarodonta: Echinometridae) from two sites in Western Visayas, Philippines (Taklong Island, Guimaras and Nabas, Aklan)https://peerj.com/preprints/279862019-10-282019-10-28Joseph Ricky TamayoMaria Celia D Malay
Echinometra mathaei is a species complex with its constituent reproductively-isolated species informally called A, B, C and D based on studies done in Okinawa and the Red Sea. Little research has been done on this genus, and to our knowledge no studies have been done on the E. mathaei complex in the Philippines. To help clarify species delineations in the E. mathaei complex, a comparative study was done between two localities in Western Visayas, Philippines: the Taklong Island National Marine Reserve, in Nueva Valencia, Guimaras and Barangay Unidos in Nabas, Aklan. Morphological characteristics (spine color, milled rings, and skin around the peristome) and tubefeet and gonad spicules were observed. Two or possibly three species of Echinometra were found in the two sites based on their morphology and spicules, namely: Echinometra sp. A, Echinometra sp. C, and Echinometra affinity C, which resembles sp. C but differs in the milled rings and gonad spicules. Echinometra sp. C and E. affinity C cannot be distinguished on the basis of field-visible characters, thus the two morphs are referred to as Echinometra VC for the purpose of field surveys. Echinometra VC and Echinometra sp. A exhibited differences in abundance (VC was much more common) and microhabitat (VC was restricted to rocky shores and never observed in coral communities). To study the abundance and distribution of Echinometra VC, 50 m by 2 m belt transects were surveyed along the rocky shores of both sites: two parallel transects (at 0 m and at 0.9 m) and a perpendicular transect (only in Nabas), each with three replicates. The transect data showed that the mean densities for 0 m and 0.9 m in Nabas are significantly higher in Taklong yielding p-values of 0.001 and 0.002, respectively, when analyzed using t-test.Of the two sites, only Nabas showed a significant difference between the mean densities at 0 m and 0.9 m, with the mean density at 0.9 m significantly higher than that of 0 m yielding a p-value of 0.02 when analyzed using two-sample t-test. A Poisson regression on the perpendicular transect data from Nabas showed a trend of increasing Echinometra density with increasing distance from the shore. In the future, DNA barcoding and cross-fertilization studies should be performed in order to confirm the species of Echinometra observed. Many factors can affect the density and distribution of Echinometra, so further studies must be conducted to explain observed differences in their distribution and abundance.
Echinometra mathaei is a species complex with its constituent reproductively-isolated species informally called A, B, C and D based on studies done in Okinawa and the Red Sea. Little research has been done on this genus, and to our knowledge no studies have been done on the E. mathaei complex in the Philippines. To help clarify species delineations in the E. mathaei complex, a comparative study was done between two localities in Western Visayas, Philippines: the Taklong Island National Marine Reserve, in Nueva Valencia, Guimaras and Barangay Unidos in Nabas, Aklan. Morphological characteristics (spine color, milled rings, and skin around the peristome) and tubefeet and gonad spicules were observed. Two or possibly three species of Echinometra were found in the two sites based on their morphology and spicules, namely: Echinometra sp. A, Echinometra sp. C, and Echinometra affinity C, which resembles sp. C but differs in the milled rings and gonad spicules. Echinometra sp. C and E. affinity C cannot be distinguished on the basis of field-visible characters, thus the two morphs are referred to as Echinometra VC for the purpose of field surveys. Echinometra VC and Echinometra sp. A exhibited differences in abundance (VC was much more common) and microhabitat (VC was restricted to rocky shores and never observed in coral communities). To study the abundance and distribution of Echinometra VC, 50 m by 2 m belt transects were surveyed along the rocky shores of both sites: two parallel transects (at 0 m and at 0.9 m) and a perpendicular transect (only in Nabas), each with three replicates. The transect data showed that the mean densities for 0 m and 0.9 m in Nabas are significantly higher in Taklong yielding p-values of 0.001 and 0.002, respectively, when analyzed using t-test.Of the two sites, only Nabas showed a significant difference between the mean densities at 0 m and 0.9 m, with the mean density at 0.9 m significantly higher than that of 0 m yielding a p-value of 0.02 when analyzed using two-sample t-test. A Poisson regression on the perpendicular transect data from Nabas showed a trend of increasing Echinometra density with increasing distance from the shore. In the future, DNA barcoding and cross-fertilization studies should be performed in order to confirm the species of Echinometra observed. Many factors can affect the density and distribution of Echinometra, so further studies must be conducted to explain observed differences in their distribution and abundance.Biogeographic patterns of belemnite body size responses to episodes of environmental crisishttps://peerj.com/preprints/280002019-09-302019-09-30Patrícia RitaJosé C. García-RamosPascal NeigeLaura PiñuelaRobert WeisLuís V. DuarteChristof ÜbelackerKenneth De Baets
Body size changes have been investigated through episodes of environmental crisis among several groups of organisms but the relative contribution of within-lineage size changes, selective extinction and origination of taxa on these patterns is still being debated. Rapid warming, anoxia, and perturbations of the carbon cycle linked with volcanic activity, as well as their impact on marine diversity are well documented for the Pliensbachian-Toarcian (Pli-Toa) boundary and for the Toarcian Oceanic Anoxic Event (T-OAE). Belemnites were a very abundant and successful cephalopod group in the Mesozoic oceans playing a paramount role in the oceanic trophic webs. Belemnites have mainly been studied from a geochemical perspective during this interval. Newly collected data from three northern and western Iberian sections (Peniche, Rodiles and Lastres) allowed an analysis of the belemnite body size dynamics across the Pli-Toa boundary and the T-OAE and a comparison with other European basins. In Peniche (Lusitanian Basin, Portugal), a significant reduction in belemnite body size was recognized across the Pli-Toa boundary at the assemblage level (i.e. community scale of organization). From the analysis of the different taxa recorded, it seems that adult specimens of Pseudohastites longiformis are driving the body size pattern observed (13% rostrum size decrease). The uppermost Polymorphum-Levisoni zones interval is characterized by a dramatic decrease on both belemnite abundance and diversity. Only 4 specimens of the genus Acrocoelites were found, increasing the body size at the assemblage level. In the Asturian Basin (N Spain), on the other hand, a body size increase at the assemblage level is recognized across the Pli-Toa boundary caused by a within-lineage effect mainly related to adult specimens of Passaloteuthis and Pseudohastites genera. During the onset of the T-OAE, belemnite body size increases due to the appearance of Acrocoelites genus. To summarize, the increase in rostrum size at the assemblage level across the T-OAE is associated with the radiation of a large-sized taxon (Acrocoelites genus) and the extinction of various other species. On the other hand, across the Pli-Toa boundary, the belemnite body size changes are dominated by within-lineage mechanisms. This suggests that species might have been able to cope within the early warming phase (Pli-Ta boundary), but were more affected by the subsequent warming and anoxia during the T-OAE. Our preliminary results indicate that this pattern might also be recognized in other western European sections, such as Cleveland Basin, western Paris Basin (Normandy) and Southern Germany sections. The biotic and abiotic drivers of belemnite body size changes still need to be comprehensively analyzed.
Body size changes have been investigated through episodes of environmental crisis among several groups of organisms but the relative contribution of within-lineage size changes, selective extinction and origination of taxa on these patterns is still being debated. Rapid warming, anoxia, and perturbations of the carbon cycle linked with volcanic activity, as well as their impact on marine diversity are well documented for the Pliensbachian-Toarcian (Pli-Toa) boundary and for the Toarcian Oceanic Anoxic Event (T-OAE). Belemnites were a very abundant and successful cephalopod group in the Mesozoic oceans playing a paramount role in the oceanic trophic webs. Belemnites have mainly been studied from a geochemical perspective during this interval. Newly collected data from three northern and western Iberian sections (Peniche, Rodiles and Lastres) allowed an analysis of the belemnite body size dynamics across the Pli-Toa boundary and the T-OAE and a comparison with other European basins. In Peniche (Lusitanian Basin, Portugal), a significant reduction in belemnite body size was recognized across the Pli-Toa boundary at the assemblage level (i.e. community scale of organization). From the analysis of the different taxa recorded, it seems that adult specimens of Pseudohastites longiformis are driving the body size pattern observed (13% rostrum size decrease). The uppermost Polymorphum-Levisoni zones interval is characterized by a dramatic decrease on both belemnite abundance and diversity. Only 4 specimens of the genus Acrocoelites were found, increasing the body size at the assemblage level. In the Asturian Basin (N Spain), on the other hand, a body size increase at the assemblage level is recognized across the Pli-Toa boundary caused by a within-lineage effect mainly related to adult specimens of Passaloteuthis and Pseudohastites genera. During the onset of the T-OAE, belemnite body size increases due to the appearance of Acrocoelites genus. To summarize, the increase in rostrum size at the assemblage level across the T-OAE is associated with the radiation of a large-sized taxon (Acrocoelites genus) and the extinction of various other species. On the other hand, across the Pli-Toa boundary, the belemnite body size changes are dominated by within-lineage mechanisms. This suggests that species might have been able to cope within the early warming phase (Pli-Ta boundary), but were more affected by the subsequent warming and anoxia during the T-OAE. Our preliminary results indicate that this pattern might also be recognized in other western European sections, such as Cleveland Basin, western Paris Basin (Normandy) and Southern Germany sections. The biotic and abiotic drivers of belemnite body size changes still need to be comprehensively analyzed.Wave propagation in the biosonar organ of sperm whales using a finite difference time domain methodhttps://peerj.com/preprints/279952019-09-302019-09-30Maxence FerrariRicard MarxerMark AschHervé Glotin
The bio-sonar of sperm whales presents many specific characteristics, such as its size, its loudness or its vocalization abilities. Furthermore it fulfills several roles in their foraging and social behaviour. However our knowledge about its operation remains limited to the main acoustic path that the emitted pulse may take. We still ignore the precise mechanisms that shape the wave and on which parts the sperm whale is able to act. In this paper, we describe a technique to simulate sperm whale click generation from a physical perspective. Such an approach aims at unveiling the processes involved in their vocal production, as a stepping stone towards a better understanding of their interaction with peers and the environment.
The bio-sonar of sperm whales presents many specific characteristics, such as its size, its loudness or its vocalization abilities. Furthermore it fulfills several roles in their foraging and social behaviour. However our knowledge about its operation remains limited to the main acoustic path that the emitted pulse may take. We still ignore the precise mechanisms that shape the wave and on which parts the sperm whale is able to act. In this paper, we describe a technique to simulate sperm whale click generation from a physical perspective. Such an approach aims at unveiling the processes involved in their vocal production, as a stepping stone towards a better understanding of their interaction with peers and the environment.Barnacle recruit density and size increase from high to middle intertidal elevations in wave-exposed habitats on the Atlantic coast of Nova Scotiahttps://peerj.com/preprints/279662019-09-172019-09-17Ricardo A Scrosati
Barnacle recruitment is often studied in rocky intertidal habitats due to the relevant role that barnacles can play in intertidal communities. In 2014, barnacle (Semibalanus balanoides) recruitment was measured at high elevations in wave-exposed intertidal habitats on the NW Atlantic coast in Nova Scotia, Canada. Values were considerably lower than previously reported for middle elevations in wave-exposed intertidal habitats on the NE Atlantic and NE Pacific coasts. To determine if such differences in recruitment may have resulted from elevation influences, I did a field experiment in 2019 in wave-exposed intertidal habitats in Nova Scotia to test the hypothesis that recruitment is higher at middle than at high elevations, based on known environmental differences between both elevation zones. Based on data from three locations spanning 158 km of the Nova Scotia coast, barnacle recruitment was, on average, nearly 200 % higher (and recruits were larger) at middle than at high elevations. However, even with this increase, barnacle recruitment on this NW Atlantic coast is still lower than for comparable habitats on the NE Atlantic and NE Pacific coasts, and also lower than previously reported for wave-exposed locations farther south on the NW Atlantic coast, in Maine, USA. Therefore, barnacle recruitment in wave-exposed intertidal environments in Nova Scotia appears to be only moderate relative to other shores. This difference in the supply of barnacle recruits might influence the intensity of interspecific interactions involving barnacles.
Barnacle recruitment is often studied in rocky intertidal habitats due to the relevant role that barnacles can play in intertidal communities. In 2014, barnacle (Semibalanus balanoides) recruitment was measured at high elevations in wave-exposed intertidal habitats on the NW Atlantic coast in Nova Scotia, Canada. Values were considerably lower than previously reported for middle elevations in wave-exposed intertidal habitats on the NE Atlantic and NE Pacific coasts. To determine if such differences in recruitment may have resulted from elevation influences, I did a field experiment in 2019 in wave-exposed intertidal habitats in Nova Scotia to test the hypothesis that recruitment is higher at middle than at high elevations, based on known environmental differences between both elevation zones. Based on data from three locations spanning 158 km of the Nova Scotia coast, barnacle recruitment was, on average, nearly 200 % higher (and recruits were larger) at middle than at high elevations. However, even with this increase, barnacle recruitment on this NW Atlantic coast is still lower than for comparable habitats on the NE Atlantic and NE Pacific coasts, and also lower than previously reported for wave-exposed locations farther south on the NW Atlantic coast, in Maine, USA. Therefore, barnacle recruitment in wave-exposed intertidal environments in Nova Scotia appears to be only moderate relative to other shores. This difference in the supply of barnacle recruits might influence the intensity of interspecific interactions involving barnacles.Host-associated microbiomes and their roles in marine ecosystem functionshttps://peerj.com/preprints/279302019-08-302019-08-30Laetitia G.E. WilkinsMatthieu LerayBenedict YuenRaquel PeixotoTiago J. PereiraHolly M. BikDavid A. CoilJ. Emmett DuffyEdward Allen HerreHarilaos LessiosNoelle LuceyLuis C. MejiaAaron O'DeaDouglas B. RasherKoty SharpEmilia M. SoginRobert W. ThackerRebecca Vega ThurberWilliam T. WcisloElizabeth G. WilbanksJonathan A. Eisen
The significance of mutualisms between eukaryotic hosts and microbes extends from the organismal to the ecosystem level, and mutualistic symbioses underpin the health of Earth’s most threatened marine ecosystems. Despite rapid growth in research on host-associated microbes (microbiomes), very little is known about their interactions for the vast majority of marine host species. We outline research priorities to broaden our current knowledge of host-microbiome interactions and how they shape marine ecosystems. We argue that this research frontier will allow us to predict responses of species, communities, and ecosystems to stressors driven by human activity, and inform future management and mitigation.
The significance of mutualisms between eukaryotic hosts and microbes extends from the organismal to the ecosystem level, and mutualistic symbioses underpin the health of Earth’s most threatened marine ecosystems. Despite rapid growth in research on host-associated microbes (microbiomes), very little is known about their interactions for the vast majority of marine host species. We outline research priorities to broaden our current knowledge of host-microbiome interactions and how they shape marine ecosystems. We argue that this research frontier will allow us to predict responses of species, communities, and ecosystems to stressors driven by human activity, and inform future management and mitigation.Spatio-temporal patterns of the oceanic conditions and nearshore marine community in the Mid-Atlantic Bight (New Jersey, USA)https://peerj.com/preprints/279202019-08-282019-08-28Juan C Levesque
Oceanic environmental conditions influence, shape, and control the geographical range, spatial distribution, abundance, and size composition of marine fauna. Water temperature, salinity, dissolved oxygen, depth, and sediment type influence select fish life-history characteristics and community structure. Marine communities are vulnerable to major changes in environmental conditions, but the response and severity depends on various biological or ecological factors, such as resilience to stress or adaptation. Researchers around the world have predicted and documented numerous alterations in fish communities caused by ongoing significant physicochemical shifts associated with natural and potentially unnatural sources, but published studies describing the historical conditions are lacking for most regions around the world, including the coastal waters off New Jersey. Given the need to understand these processes, a multifaceted investigation was undertaken to describe, evaluate, and compare the oceanic conditions and nearshore marine fauna community off New Jersey during 1988 through 2015. Findings showed the oceanic conditions varied over time and space. Mean surface water temperature increased significantly about 0.6°C per decade, mean salinity decreased about 1.3 psu per decade, and dissolved oxygen increased 0.09 mg/l per decade. Over 20.4 million fish and invertebrates (1,338.3 mt) representing 214 (water temperature preference classified) species (not including unidentified species) were collected within 15 strata (areas: 12−26) off the coast of New Jersey from 1988 to 2015. Three marine fauna water temperature preference groups (coldwater-adapted, warmwater-adapted, and subtropic-adapted) were identified in the study area. The main coldwater-adapted species collected were longfin squid (Loligo pealei) (n = 2,225,975), Atlantic herring (Clupea harengus) (n = 544,032), and little skate (Leucoraja erinacea) (n = 316,356), while Atlantic butterfish (Peprilus triacanthus) (n = 2,873,138), scup (Stenotomus chrysops) (n = 1,318,569), and northern searobin (Prionotus carolinus) (n = 503,230) represented the warmwater-adapted group. Bay anchovy (Anchoa mitchilli) (n = 9,227,960), striped anchovy (Anchoa hepsetus) (n = 245,214), and Atlantic moonfish (Vomer setapinnis) (n = 38,691) denoted the subtropic-adapted group. Subtropic-adapted species were the most abundant and coldwater-adapted were the least abundant water temperature preference group. The estimated abundance of coldwater-adapted species declined, warmwater-adapted species slightly increased, and subtropic-adapted species decreased with time, which suggest the environmental conditions are influencing and thereby shifting the marine community.
Oceanic environmental conditions influence, shape, and control the geographical range, spatial distribution, abundance, and size composition of marine fauna. Water temperature, salinity, dissolved oxygen, depth, and sediment type influence select fish life-history characteristics and community structure. Marine communities are vulnerable to major changes in environmental conditions, but the response and severity depends on various biological or ecological factors, such as resilience to stress or adaptation. Researchers around the world have predicted and documented numerous alterations in fish communities caused by ongoing significant physicochemical shifts associated with natural and potentially unnatural sources, but published studies describing the historical conditions are lacking for most regions around the world, including the coastal waters off New Jersey. Given the need to understand these processes, a multifaceted investigation was undertaken to describe, evaluate, and compare the oceanic conditions and nearshore marine fauna community off New Jersey during 1988 through 2015. Findings showed the oceanic conditions varied over time and space. Mean surface water temperature increased significantly about 0.6°C per decade, mean salinity decreased about 1.3 psu per decade, and dissolved oxygen increased 0.09 mg/l per decade. Over 20.4 million fish and invertebrates (1,338.3 mt) representing 214 (water temperature preference classified) species (not including unidentified species) were collected within 15 strata (areas: 12−26) off the coast of New Jersey from 1988 to 2015. Three marine fauna water temperature preference groups (coldwater-adapted, warmwater-adapted, and subtropic-adapted) were identified in the study area. The main coldwater-adapted species collected were longfin squid (Loligo pealei) (n = 2,225,975), Atlantic herring (Clupea harengus) (n = 544,032), and little skate (Leucoraja erinacea) (n = 316,356), while Atlantic butterfish (Peprilus triacanthus) (n = 2,873,138), scup (Stenotomus chrysops) (n = 1,318,569), and northern searobin (Prionotus carolinus) (n = 503,230) represented the warmwater-adapted group. Bay anchovy (Anchoa mitchilli) (n = 9,227,960), striped anchovy (Anchoa hepsetus) (n = 245,214), and Atlantic moonfish (Vomer setapinnis) (n = 38,691) denoted the subtropic-adapted group. Subtropic-adapted species were the most abundant and coldwater-adapted were the least abundant water temperature preference group. The estimated abundance of coldwater-adapted species declined, warmwater-adapted species slightly increased, and subtropic-adapted species decreased with time, which suggest the environmental conditions are influencing and thereby shifting the marine community.A community perspective on the concept of marine holobionts: current status, challenges, and future directionshttps://peerj.com/preprints/275192019-08-232019-08-23Simon M DittamiEnrique ArboledaJean-Christophe AuguetArite BigalkeEnora BriandPaco CardenasUlisse CardiniJohan DecelleAschwin H EngelenDamien EveillardClaire M.M. GachonSarah M GriffithsTilmann HarderEhsan KayalElena KazamiaFrançois H LallierMónica MedinaEzequiel MarzinelliTeresa MorgantiLaura Núñez PonsSoizic PradoJosé PintadoMahasweta SahaMarc-André SelosseDerek SkillingsWillem StockShinichi SunagawaEve ToulzaAlexey VorobevCatherine LeblancFabrice Not
Host-microbe interactions play crucial roles in marine ecosystems, but we still have very little understanding of the mechanisms that govern these relationships, the evolutionary processes that shape them, and their ecological consequences. The holobiont concept is a renewed paradigm in biology that can help to describe and understand these complex systems. It posits that a host and its associated microbiota, living together in a stable relationship, form the holobiont, and have to be studied together as a coherent biological and functional unit to understand its biology, ecology, and evolution. Here we discuss critical concepts and opportunities in marine holobiont research and identify key challenges in the field. We highlight the potential economic, sociological, and environmental impacts of the holobiont concept in marine biological, evolutionary, and environmental sciences with comparisons to terrestrial sciences where appropriate. Given the connectivity and the unexplored biodiversity specific to marine ecosystems, a deeper understanding of such complex systems requires further technological and conceptual advances, e.g. the development of controlled experimental model systems for holobionts from all major lineages and the modeling of (info)chemical-mediated interactions between organisms. The most significant challenge is to bridge cross-disciplinary research on tractable model systems in order to address key ecological and evolutionary questions. This will be crucial to decipher the roles of marine holobionts in biogeochemical cycles, but also developing concrete applications of the holobiont concept e.g. to increase yield or disease resistance in aquacultures or to protect and restore marine ecosystems through management projects.
Host-microbe interactions play crucial roles in marine ecosystems, but we still have very little understanding of the mechanisms that govern these relationships, the evolutionary processes that shape them, and their ecological consequences. The holobiont concept is a renewed paradigm in biology that can help to describe and understand these complex systems. It posits that a host and its associated microbiota, living together in a stable relationship, form the holobiont, and have to be studied together as a coherent biological and functional unit to understand its biology, ecology, and evolution. Here we discuss critical concepts and opportunities in marine holobiont research and identify key challenges in the field. We highlight the potential economic, sociological, and environmental impacts of the holobiont concept in marine biological, evolutionary, and environmental sciences with comparisons to terrestrial sciences where appropriate. Given the connectivity and the unexplored biodiversity specific to marine ecosystems, a deeper understanding of such complex systems requires further technological and conceptual advances, e.g. the development of controlled experimental model systems for holobionts from all major lineages and the modeling of (info)chemical-mediated interactions between organisms. The most significant challenge is to bridge cross-disciplinary research on tractable model systems in order to address key ecological and evolutionary questions. This will be crucial to decipher the roles of marine holobionts in biogeochemical cycles, but also developing concrete applications of the holobiont concept e.g. to increase yield or disease resistance in aquacultures or to protect and restore marine ecosystems through management projects.Effect of coral reef restoration on demersal biodiversity in Okinawa, Japanhttps://peerj.com/preprints/279062019-08-182019-08-18Piera BiondiGiovanni D MasucciJames D Reimer
Global climate change is leading to damage and loss of coral reef ecosystems. On subtropical Okinawa Island in southwestern Japan, the prefectural government is working on coral reef restoration by outplanting coral colonies from family Acroporidae back to reefs after initially farming colonies inside protected nurseries. In this study we evaluated the ongoing restoration efforts by comparing outplanted locations with nearby control locations with no restoration activity. We examined 3 sites on the coast of Onna Village on the west coast of the island; each site included an outplanted and control location. We used 1) coral rubble sampling to evaluate and compare abundance and diversity of rubble cryptofauna; and 2) coral reef monitoring using photograph transects to track live coral coverage. Results showed that rubble shape had a positive correlation with the numbers of animals found within rubble themselves and may therefore constitute a reliable abundance predictor. Outplanted locations did not show differences with the controls in rubble cryptofauna abundance, but had significantly lower coral coverage. Differences between sites were significant, for both rubble cryptofauna and coral coverage.We recommend; 1) to evaluate outplanting colonies from more stress-resistant genera in place of Acropora, 2) to conduct regular surveys to monitor the situation closely, and 3) to establish conservation and sustainable practices that could aid restoration efforts, reducing coral mortality of both outplanted and native colonies.
Global climate change is leading to damage and loss of coral reef ecosystems. On subtropical Okinawa Island in southwestern Japan, the prefectural government is working on coral reef restoration by outplanting coral colonies from family Acroporidae back to reefs after initially farming colonies inside protected nurseries. In this study we evaluated the ongoing restoration efforts by comparing outplanted locations with nearby control locations with no restoration activity. We examined 3 sites on the coast of Onna Village on the west coast of the island; each site included an outplanted and control location. We used 1) coral rubble sampling to evaluate and compare abundance and diversity of rubble cryptofauna; and 2) coral reef monitoring using photograph transects to track live coral coverage. Results showed that rubble shape had a positive correlation with the numbers of animals found within rubble themselves and may therefore constitute a reliable abundance predictor. Outplanted locations did not show differences with the controls in rubble cryptofauna abundance, but had significantly lower coral coverage. Differences between sites were significant, for both rubble cryptofauna and coral coverage.We recommend; 1) to evaluate outplanting colonies from more stress-resistant genera in place of Acropora, 2) to conduct regular surveys to monitor the situation closely, and 3) to establish conservation and sustainable practices that could aid restoration efforts, reducing coral mortality of both outplanted and native colonies.