Bronze Contributor

7,780 Points

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Bronze Contributor

Tatiana V Tatarinova

PeerJ Editor, Author & Reviewer

Summary

Fletcher Jones Endowed Chair in Computational Biology and Associate Professor of Biology, University of La Verne. Member of The Russian-American Science Association Coordinating Committee.

Computational Biology

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

University of La Verne

University of Southern California

Work details

Fletcher Jones Endowed Chair in Computational Biology

University of La Verne

August 2017

Biology

Associate Professor of Research

University of Southern California

July 2013 - June 2017

CHLA

Websites

PeerJ Contributions

December 14, 2021

Local ancestry prediction with PyLAE

Nikita Moshkov, Aleksandr Smetanin, Tatiana V. Tatarinova

https://doi.org/10.7717/peerj.12502 PubMed 35003914

July 22, 2021

Detection of genomic regions associated malformations in newborn piglets: a machine-learning approach

Siroj Bakoev, Aleksei Traspov, Lyubov Getmantseva, Anna Belous, Tatiana Karpushkina, Olga Kostyunina, Alexander Usatov, Tatiana V. Tatarinova

https://doi.org/10.7717/peerj.11580 PubMed 34327051

July 2, 2021

Genome-wide analysis of genetic diversity and artificial selection in Large White pigs in Russia

Siroj Bakoev, Lyubov Getmantseva, Olga Kostyunina, Nekruz Bakoev, Yuri Prytkov, Alexander Usatov, Tatiana V. Tatarinova

https://doi.org/10.7717/peerj.11595 PubMed 34249494

March 23, 2020

PigLeg: prediction of swine phenotype using machine learning

Siroj Bakoev, Lyubov Getmantseva, Maria Kolosova, Olga Kostyunina, Duane R. Chartier, Tatiana V. Tatarinova

https://doi.org/10.7717/peerj.8764 PubMed 32231879

November 1, 2019

TransPrise: a novel machine learning approach for eukaryotic promoter prediction

Stepan Pachganov, Khalimat Murtazalieva, Aleksei Zarubin, Dmitry Sokolov, Duane R. Chartier, Tatiana V. Tatarinova

https://doi.org/10.7717/peerj.7990 PubMed 31695967

July 10, 2019 - Version: 1

TransPrise: a novel machine learning approach for eukaryotic promoter prediction

Stepan Pachganov, Khalimat Murtazalieva, Alexei Zarubin, Dmitry Sokolov, Duane Chartier, Tatiana V Tatarinova

https://doi.org/10.7287/peerj.preprints.27844v1

Academic Editor on

May 6, 2024

Caffeoylquinic acid profiling: comparative analysis in yerba mate, Indian camphorweed, and stevia extracts with emphasis on the influence of brewing conditions and cold storage in yerba mate infusion

Gholamreza Khaksar, Nantachaporn Chaichana, Kitipong Assatarakul, Supaart Sirikantaramas

https://doi.org/10.7717/peerj.17250 PubMed 38726376

February 10, 2022

Genetic variability studies for tuber yield and yield attributes in Ethiopian released potato (Solanum tuberosum L.) varieties

Gebrehanna Lemma Tessema, Ali Wassu Mohammed, Desta Tesfaye Abebe

https://doi.org/10.7717/peerj.12860 PubMed 35186467

April 9, 2021

Detrimental effects of heat stress on grain weight and quality in rice (Oryza sativa L.) are aggravated by decreased relative humidity

Haoliang Yan, Chunhu Wang, Ke Liu, Xiaohai Tian

https://doi.org/10.7717/peerj.11218 PubMed 33889448

March 16, 2021

Transcriptome profiling reveals histone deacetylase 1 gene overexpression improves flavonoid, isoflavonoid, and phenylpropanoid metabolism in Arachis hypogaea hairy roots

Liangchen Su, Shuai Liu, Xing Liu, Baihong Zhang, Meijuan Li, Lidan Zeng, Ling Li

https://doi.org/10.7717/peerj.10976 PubMed 33777524

November 27, 2020

Eco-morphological diversity of larvae of soldier flies and their closest relatives in deep time

Viktor A. Baranov, Yinan Wang, Rok Gašparič, Sonja Wedmann, Joachim T. Haug

https://doi.org/10.7717/peerj.10356 PubMed 33312767

November 2, 2020

Genome-wide discovery and characterization of long noncoding RNAs in African oil palm (Elaeis guineensis Jacq.)

Wei Xia, Yajing Dou, Rui Liu, Shufang Gong, Dongyi Huang, Haikuo Fan, Yong Xiao

https://doi.org/10.7717/peerj.9585 PubMed 33194332

October 23, 2020

Computerized monitoring of COVID-19 trials, studies and registries in ClinicalTrials.gov registry

Craig S. Mayer, Vojtech Huser

https://doi.org/10.7717/peerj.10261 PubMed 33150094

September 9, 2020

Omics approaches in Allium research: Progress and way ahead

Kiran Khandagale, Ram Krishna, Praveen Roylawar, Avinash B. Ade, Ashwini Benke, Bharat Shinde, Major Singh, Suresh J. Gawande, Ashutosh Rai

https://doi.org/10.7717/peerj.9824 PubMed 32974094

August 28, 2020

Biomass, abundances, and abundance and geographical range size relationship of birds along a rainforest elevational gradient in Papua New Guinea

Katerina Sam, Bonny Koane

https://doi.org/10.7717/peerj.9727 PubMed 32923179

August 27, 2020

Effects of supplementation levels of Allium fistulosum L. extract on in vitro ruminal fermentation characteristics and methane emission

Jun Sik Eom, Shin Ja Lee, Yejun Lee, Hyun Sang Kim, You Young Choi, Hyeong Suk Kim, Do Hyung Kim, Sung Sill Lee

https://doi.org/10.7717/peerj.9651 PubMed 32913673

August 18, 2020

New records of a lost species and a geographic range expansion for sengis in the Horn of Africa

Steven Heritage, Houssein Rayaleh, Djama G. Awaleh, Galen B. Rathbun

https://doi.org/10.7717/peerj.9652 PubMed 32879790

August 6, 2020

Geographic population genetic structure and diversity of Sophora moorcroftiana based on genotyping-by-sequencing (GBS)

Ying Liu, Fei Yi, Guijuan Yang, Yuting Wang, Ciren Pubu, Runhua He, Yao Xiao, Junchen Wang, Nan Lu, Junhui Wang, Wenjun Ma

https://doi.org/10.7717/peerj.9609 PubMed 33240581

August 4, 2020

OBAMA: OBAMA for Bayesian amino-acid model averaging

Remco R. Bouckaert

https://doi.org/10.7717/peerj.9460 PubMed 32832259

July 28, 2020

Assessment of potato peel and agro-forestry biochars supplementation on in vitro ruminal fermentation

Ana R.F. Rodrigues, Margarida R.G. Maia, Ana R.J. Cabrita, Hugo M. Oliveira, Maria Bernardo, Nuno Lapa, Isabel Fonseca, Henrique Trindade, José L. Pereira, António J.M. Fonseca

https://doi.org/10.7717/peerj.9488 PubMed 33194323

July 16, 2020

Whole mitochondrial genome sequence and phylogenetic relationships of Williams’s jerboa (Scarturus williamsi) from Turkey

Osman İbiş

https://doi.org/10.7717/peerj.9569 PubMed 32742814

July 6, 2020

Rodents’ responses to manipulated plant litter and seed densities: implications for restoration

Nancy Nicolai

https://doi.org/10.7717/peerj.9465 PubMed 32704449

June 11, 2020

GISA: using Gauss Integrals to identify rare conformations in protein structures

Christian Grønbæk, Thomas Hamelryck, Peter Røgen

https://doi.org/10.7717/peerj.9159 PubMed 32566389

June 8, 2020

Multiple immunity-related genes control susceptibility of Arabidopsis thaliana to the parasitic weed Phelipanche aegyptiaca

Christopher R. Clarke, So-Yon Park, Robert Tuosto, Xiaoyan Jia, Amanda Yoder, Jennifer Van Mullekom, James Westwood

https://doi.org/10.7717/peerj.9268 PubMed 32551199

May 20, 2020

Impact of cost distance and habitat fragmentation on the daily path length of Rhinopithecus bieti

Cong Li, Xumao Zhao, Dayong Li, Paul Alan Garber, Zuofu Xiang, Ming Li, Huijuan Pan

https://doi.org/10.7717/peerj.9165 PubMed 32509457

May 5, 2020

Genetic diversity of Alternaria species associated with black point in wheat grains

Ainur Turzhanova, Oxana N. Khapilina, Asem Tumenbayeva, Vladislav Shevtsov, Olesya Raiser, Ruslan Kalendar

https://doi.org/10.7717/peerj.9097 PubMed 32411537

April 17, 2020

New fossil lizard specimens from a poorly-known squamate assemblage in the Upper Cretaceous (Campanian) San Juan Basin, New Mexico, USA

C. Henrik Woolley, Nathan D. Smith, Joseph J.W. Sertich

https://doi.org/10.7717/peerj.8846 PubMed 32337098

April 9, 2020

Kati Sundström, Pashupati P. Mishra, Mikko J. Pyysalo, Terho Lehtimäki, Pekka J. Karhunen, Tanja Pessi

https://doi.org/10.7717/peerj.8799 PubMed 32296599

March 27, 2020

Probabilistic model based on circular statistics for quantifying coverage depth dynamics originating from DNA replication

Shinya Suzuki, Takuji Yamada

https://doi.org/10.7717/peerj.8722 PubMed 32257635

March 23, 2020

Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice

Andrew D. Sweet, Kevin P. Johnson, Stephen L. Cameron

https://doi.org/10.7717/peerj.8759 PubMed 32231878

March 20, 2020

Substrate rugosity and temperature matters: patterns of benthic diversity at tropical intertidal reefs in the SW Atlantic

Ana Carolina de A. Mazzuco, Patricia Sarcinelli Stelzer, Angelo F. Bernardino

https://doi.org/10.7717/peerj.8289 PubMed 32219015

March 16, 2020

Carbohydrates stimulated Amaryllidaceae alkaloids biosynthesis in Leucojum aestivum L. plants cultured in RITA^® bioreactor

Agata Ptak, Emilia Morańska, Edyta Skrzypek, Marzena Warchoł, Rosella Spina, Dominique Laurain-Mattar, Magdalena Simlat

https://doi.org/10.7717/peerj.8688 PubMed 32211230

March 6, 2020

Comparative transcriptomic analyses of chlorogenic acid and luteolosides biosynthesis pathways at different flowering stages of diploid and tetraploid Lonicera japonica

Hongli Wang, Yanqun Li, Sibo Wang, Dexin Kong, Sunil Kumar Sahu, Mei Bai, Haoyuan Li, Linzhou Li, Yan Xu, Hongping Liang, Huan Liu, Hong Wu

https://doi.org/10.7717/peerj.8690 PubMed 32185107

February 26, 2020

Tall Pinus luzmariae trees with genes from P. herrerae

Christian Wehenkel, Samantha del Rocío Mariscal-Lucero, M. Socorro González-Elizondo, Víctor A. Aguirre-Galindo, Matthias Fladung, Carlos A. López-Sánchez

https://doi.org/10.7717/peerj.8648 PubMed 32149029

February 21, 2020

Transcriptomic and proteomic profiles of II YOU 838 (Oryza sativa) provide insights into heat stress tolerance in hybrid rice

Yan Wang, Yang Yu, Min Huang, Peng Gao, Hao Chen, Mianxue Liu, Qian Chen, Zhirong Yang, Qun Sun

https://doi.org/10.7717/peerj.8306 PubMed 32117601

February 17, 2020

Genome-wide characterization and expression analysis of the Dof gene family related to abiotic stress in watermelon

Yong Zhou, Yuan Cheng, Chunpeng Wan, Jingwen Li, Youxin Yang, Jinyin Chen

https://doi.org/10.7717/peerj.8358 PubMed 32110479

February 14, 2020

Intracranial aneurysm’s association with genetic variants, transcription abnormality, and methylation changes in ADAMTS genes

Shi Chen, Mengqi Li, Wenqiang Xin, Shengze Liu, Linfei Zheng, Yan Li, Mengyao Li, Mengxiong Zhan, Xinyu Yang

https://doi.org/10.7717/peerj.8596 PubMed 32095376

February 13, 2020

Arina L. Maltseva, Marina A. Varfolomeeva, Arseniy A. Lobov, Polina Tikanova, Marina Panova, Natalia A. Mikhailova, Andrei I. Granovitch

https://doi.org/10.7717/peerj.8546 PubMed 32095363

February 6, 2020

Obama chez moi! The invasion of metropolitan France by the land planarian Obama nungara (Platyhelminthes, Geoplanidae)

Jean-Lou Justine, Leigh Winsor, Delphine Gey, Pierre Gros, Jessica Thévenot

https://doi.org/10.7717/peerj.8385 PubMed 32071801

January 31, 2020

Analysis of the genetic diversity of the coastal and island endangered plant species Elaeagnus macrophylla via conserved DNA-derived polymorphism marker

Yi Wang, Yan Ma, Bingyu Jia, Qichao Wu, Dekui Zang, Xiaoyan Yu

https://doi.org/10.7717/peerj.8498 PubMed 32042513

January 28, 2020

Complete plastid genome sequences of two species of the Neotropical genus Brunellia (Brunelliaceae)

Janice Valencia-D, José Murillo-A, Clara Inés Orozco, Carlos Parra-O, Kurt M. Neubig

https://doi.org/10.7717/peerj.8392 PubMed 32025370

December 18, 2019

Insight into plant cell wall degradation and pathogenesis of Ganoderma boninense via comparative genome analysis

Ahmad Bazli Ramzi, Muhammad Lutfi Che Me, Ummul Syafiqah Ruslan, Syarul Nataqain Baharum, Nor Azlan Nor Muhammad

https://doi.org/10.7717/peerj.8065 PubMed 31879570

December 17, 2019

Resolution-agnostic tissue segmentation in whole-slide histopathology images with convolutional neural networks

Péter Bándi, Maschenka Balkenhol, Bram van Ginneken, Jeroen van der Laak, Geert Litjens

https://doi.org/10.7717/peerj.8242 PubMed 31871843

December 13, 2019

Limited initial impacts of biomass harvesting on composition of wood-inhabiting fungi within residual stumps

Cédric Boué, Tonia DeBellis, Lisa A. Venier, Timothy T. Work, Steven W. Kembel

https://doi.org/10.7717/peerj.8027 PubMed 31844564

December 4, 2019

Rediscovery of Osteocephalus vilarsi (Anura: Hylidae): an overlooked but widespread Amazonian spiny-backed treefrog

Miquéias Ferrão, Jiří Moravec, Leandro J.C.L. Moraes, Vinicius T. de Carvalho, Marcelo Gordo, Albertina P. Lima

https://doi.org/10.7717/peerj.8160 PubMed 31824771

November 29, 2019

Characterization and expression profiling of the ICE-CBF-COR genes in wheat

Jie Guo, Yongkang Ren, Zhaohui Tang, Weiping Shi, Meixue Zhou

https://doi.org/10.7717/peerj.8190 PubMed 31803544

November 13, 2019

Prediction of clusters of miRNA binding sites in mRNA candidate genes of breast cancer subtypes

Dana Aisina, Raigul Niyazova, Shara Atambayeva, Anatoliy Ivashchenko

https://doi.org/10.7717/peerj.8049 PubMed 31741798

November 7, 2019

Zooplankton communities in the Drake Passage through environmental boundaries: a snapshot of 2010, early spring

Andrey A. Vedenin, Eteri I. Musaeva, Daria N. Zasko, Alexander L. Vereshchaka

https://doi.org/10.7717/peerj.7994 PubMed 31720115

October 28, 2019

Genetic changes in the EPAS1 gene between Tibetan and Han ethnic groups and adaptation to the plateau hypoxic environment

Cuiying Li, Xiaowei Li, Jun Xiao, Juan Liu, Xiu Fan, Fengyan Fan, Huifen Lei

https://doi.org/10.7717/peerj.7943 PubMed 31681516

October 16, 2019

The bZIP gene family in watermelon: genome-wide identification and expression analysis under cold stress and root-knot nematode infection

Youxin Yang, Jingwen Li, Hao Li, Yingui Yang, Yelan Guang, Yong Zhou

https://doi.org/10.7717/peerj.7878 PubMed 31637131

September 3, 2019

Identification and evaluation of Lonicera japonica flos introduced to the Hailuogou area based on ITS sequences and active compounds

Haiyan He, Dan Zhang, Jianing Gao, Theis Raaschou Andersen, Zishen Mou

https://doi.org/10.7717/peerj.7636 PubMed 31534858

July 10, 2019

Testing relationship between plant productivity and diversity in a desertified steppe in Northwest China

Yang Yang, Bingru Liu

https://doi.org/10.7717/peerj.7239 PubMed 31333905

July 1, 2019

The effects of resveratrol feeding and exercise training on the skeletal muscle function and transcriptome of aged rats

Jing Zhou, Zhiyin Liao, Jia Jia, Jin-Liang Chen, Qian Xiao

https://doi.org/10.7717/peerj.7199 PubMed 31304063

June 20, 2019

The lacewing Ceraeochrysa caligata as a potential biological agent for controlling the red palm mite Raoiella indica

Luis O. Viteri Jumbo, Adenir V. Teodoro, Adriano S. Rêgo, Khalid Haddi, Andréia S. Galvão, Eugênio Eduardo de Oliveira

https://doi.org/10.7717/peerj.7123 PubMed 31259098

June 17, 2019

PhD7Faster 2.0: predicting clones propagating faster from the Ph.D.-7 phage display library by coupling PseAAC and tripeptide composition

Bifang He, Heng Chen, Jian Huang

https://doi.org/10.7717/peerj.7131 PubMed 31245183

May 28, 2019

Secondary Succession under invasive species (Pteridium aquilinum) conditions in a seasonal dry tropical forest in southeastern Mexico

Alberto Jean Baptiste, Pedro A. Macario, Gerald A. Islebe, Benedicto Vargas-Larreta, Luciano Pool, Mirna Valdez-Hernández, Jorge O. López-Martínez

https://doi.org/10.7717/peerj.6974 PubMed 31179179

May 28, 2019

Functional analysis of lncRNAs based on competitive endogenous RNA in tongue squamous cell carcinoma

Yidan Song, Yihua Pan, Jun Liu

https://doi.org/10.7717/peerj.6991 PubMed 31179185

May 10, 2019

Use of aerial thermography to reduce mortality of roe deer fawns before harvest

Jan Cukor, Jan Bartoška, Jan Rohla, Jan Sova, Antonín Machálek

https://doi.org/10.7717/peerj.6923 PubMed 31123640

April 30, 2019

Identification and comparative analysis of the CIPK gene family and characterization of the cold stress response in the woody plant Prunus mume

Ping Li, Tangchun Zheng, Lulu Li, Xiaokang Zhuo, Liangbao Jiang, Jia Wang, Tangren Cheng, Qixiang Zhang

https://doi.org/10.7717/peerj.6847 PubMed 31106064

March 22, 2019

The transcriptomic response to a short day to long day shift in leaves of the reference legume Medicago truncatula

Geoffrey Thomson, James Taylor, Joanna Putterill

https://doi.org/10.7717/peerj.6626 PubMed 30923654

March 8, 2019

A multi-year experiment shows that lower precipitation predictability encourages plants’ early life stages and enhances population viability

Martí March-Salas, Patrick S. Fitze

https://doi.org/10.7717/peerj.6443 PubMed 30867983

February 26, 2019

Validation of reference genes for gene expression studies in tartary buckwheat (Fagopyrum tataricum Gaertn.) using quantitative real-time PCR

Chenglei Li, Haixia Zhao, Maofei Li, Panfeng Yao, Qingqing Li, Xuerong Zhao, Anhu Wang, Hui Chen, Zizhong Tang, Tongliang Bu, Qi Wu

https://doi.org/10.7717/peerj.6522 PubMed 30834187

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

March 26, 2024

Genome-wide identification, subcellular localization, and expression analysis of the phosphatidyl ethanolamine-binding protein family reveals the candidates involved in flowering and yield regulation of Tartary buckwheat (Fagopyrum tataricum)

Mengping Nie, Li Li, Cailin He, Jing Lu, Huihui Guo, Xiao’an Li, Mi Jiang, Ruiling Zhan, Wenjun Sun, Junjie Yin, Qi Wu

https://doi.org/10.7717/peerj.17183 PubMed 38560476

July 23, 2018

Mitochondrial genomes organization in alloplasmic lines of sunflower (Helianthus annuus L.) with various types of cytoplasmic male sterility

Maksim S. Makarenko, Igor V. Kornienko, Kirill V. Azarin, Alexander V. Usatov, Maria D. Logacheva, Nicolay V. Markin, Vera A. Gavrilova

https://doi.org/10.7717/peerj.5266 PubMed 30057860