PeerJ Preprints - Table of Contents

December 3, 2018 - Version: 2

QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science

Evan Bolyen, Jai Ram Rideout, Matthew R Dillon, Nicholas A Bokulich, Christian Abnet, Gabriel A Al-Ghalith, Harriet Alexander, Eric J Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J Brislawn, C Titus Brown, Benjamin J Callahan, Andrés Mauricio Caraballo-Rodríguez, John Chase, Emily Cope, Ricardo Da Silva, Pieter C Dorrestein, Gavin M Douglas, Daniel M Durall, Claire Duvallet, Christian F Edwardson, Madeleine Ernst, Mehrbod Estaki, Jennifer Fouquier, Julia M Gauglitz, Deanna L Gibson, Antonio Gonzalez, Kestrel Gorlick, Jiarong Guo, Benjamin Hillmann, Susan Holmes, Hannes Holste, Curtis Huttenhower, Gavin Huttley, Stefan Janssen, Alan K Jarmusch, Lingjing Jiang, Benjamin Kaehler, Kyo Bin Kang, Christopher R Keefe, Paul Keim, Scott T Kelley, Dan Knights, Irina Koester, Tomasz Kosciolek, Jorden Kreps, Morgan GI Langille, Joslynn Lee, Ruth Ley, Yong-Xin Liu, Erikka Loftfield, Catherine Lozupone, Massoud Maher, Clarisse Marotz, Bryan D Martin, Daniel McDonald, Lauren J McIver, Alexey V Melnik, Jessica L Metcalf, Sydney C Morgan, Jamie Morton, Ahmad Turan Naimey, Jose A Navas-Molina, Louis Felix Nothias, Stephanie B Orchanian, Talima Pearson, Samuel L Peoples, Daniel Petras, Mary Lai Preuss, Elmar Pruesse, Lasse Buur Rasmussen, Adam Rivers, II, Michael S Robeson, Patrick Rosenthal, Nicola Segata, Michael Shaffer, Arron Shiffer, Rashmi Sinha, Se Jin Song, John R Spear, Austin D Swafford, Luke R Thompson, Pedro J Torres, Pauline Trinh, Anupriya Tripathi, Peter J Turnbaugh, Sabah Ul-Hasan, Justin JJ van der Hooft, Fernando Vargas, Yoshiki Vázquez-Baeza, Emily Vogtmann, Max von Hippel, William Walters, Yunhu Wan, Mingxun Wang, Jonathan Warren, Kyle C Weber, Chase HD Williamson, Amy D Willis, Zhenjiang Zech Xu, Jesse R Zaneveld, Yilong Zhang, Qiyun Zhu, Rob Knight, J Gregory Caporaso

https://doi.org/10.7287/peerj.preprints.27295v2

December 17, 2018 - Version: 2

Hypothesis: Avian flight originated in arboreal archosaurs gliding on membranous wings

Piotr Bajdek, Tomasz Sulej

https://doi.org/10.7287/peerj.preprints.27213v2

December 17, 2018 - Version: 1

Adult zebrafish euthanasia: efficacy of anaesthesia overdose versus rapid cooling

Jorge M Ferreira, I Anna S Olsson, Ana M Valentim

https://doi.org/10.7287/peerj.preprints.27432v1

December 22, 2018 - Version: 1

The pipeline repertoire of Ig-Seq analysis

Laura López-Santibáñez-Jácome, Selma Eréndira Avendaño-Vázquez, Carlos Fabián Flores-Jasso

https://doi.org/10.7287/peerj.preprints.27444v1

December 24, 2018 - Version: 1

Feasibility study of the telemedicine systems deployment in rehabilitation centers for addiction therapy

Hajar Sadeghzadeh

https://doi.org/10.7287/peerj.preprints.27449v1

December 5, 2018 - Version: 1

Long-fragment targeted capture for long read sequencing of plastomes

Kevin Bethune, Cédric Mariac, Marie Couderc, Nora Scarcelli, Sylvian Santoni, Morgane Ardisson, Jean-Francois Martin, Rommel Montufar, Valentin Klein, Francois Sabot, Yves Vigouroux, Thomas LP Couvreur

https://doi.org/10.7287/peerj.preprints.27411v1

December 5, 2018 - Version: 1

Physically acting products for head lice – the end of the beginning

Ian F Burgess

https://doi.org/10.7287/peerj.preprints.27412v1

December 10, 2018 - Version: 1

Inshore, turbid coral reefs from northwest Borneo exhibiting low diversity, but high cover show evidence of resilience to various environmental stressors

Christina Brown, Nicola Browne, Jennifer L McIlwain, Jens Zinke

https://doi.org/10.7287/peerj.preprints.27422v1

December 1, 2018 - Version: 1

On the value of preprints: an early career researcher perspective

Sarvenaz Sarabipour, Humberto J Debat, Edward Emmott, Steven Burgess, Benjamin Schwessinger, Zach Hensel

https://doi.org/10.7287/peerj.preprints.27400v1

December 21, 2018 - Version: 1

Predicting chemovar cluster and variety verification in vegetative cannabis accessions using targeted single nucleotide polymorphisms

Philippe Henry, Aaron Hilyard, Steve Johnson, Cindy Orser

https://doi.org/10.7287/peerj.preprints.27442v1

December 23, 2018 - Version: 1

ERISNet: Deep learning network for Sargassum detection along the coastline of the Mexican Caribbean

Javier Arellano-Verdejo, Hugo-Enrique Lazcano-Hernandez, Nancy Cabanillas-Terán

https://doi.org/10.7287/peerj.preprints.27445v1

December 12, 2018 - Version: 1

Academic publishing empires need to go

Joona Lehtomäki, Johanna Eklund, Tuuli Toivonen

https://doi.org/10.7287/peerj.preprints.27426v1

December 7, 2018 - Version: 1

Molecular evidence that the Channel Islands populations of the orange-crowned warbler (Oreothlypis celata; Aves: Passeriformes: Parulidae) represent a distinct evolutionary lineage

Zachary R Hanna, Carla Cicero, Rauri CK Bowie

https://doi.org/10.7287/peerj.preprints.27418v1

December 28, 2018 - Version: 1

Optimizing de novo genome assembly from PCR-amplified metagenomes

Simon Roux, Gareth Trubl, Danielle Goudeau, Nandita Nath, Estelle Couradeau, Nathan A Ahlgren, Yuanchao Zhan, David Marsan, Feng Chen, Jed A Fuhrman, Trent R Northen, Matthew B Sullivan, Virginia I Rich, Rex R Malmstrom, Emiley A Eloe-Fadrosh

https://doi.org/10.7287/peerj.preprints.27453v1

December 5, 2018 - Version: 1

The neurodevelopmental trajectory of Borderline Personality Disorder: a review

Siobhan R Edinboro, Tobias Nolte, Iris Vilares

https://doi.org/10.7287/peerj.preprints.27414v1

December 8, 2018 - Version: 1

An automatic seating plan algorithm

Kresten Lindorff-Larsen

https://doi.org/10.7287/peerj.preprints.27420v1

December 19, 2018 - Version: 2

Illumina MiSeq reveals the influence of blueberry malvidin-3-galactoside on fecal microbial community structure and metabolizes of liver cancer mice

Zhen Cheng, Yuehua Wang, Bin Li

https://doi.org/10.7287/peerj.preprints.27429v2

December 11, 2018 - Version: 1

Development of a species distribution model for fin whales (Balaenoptera physalus) within a Bayesian hierarchical framework: Implications for uncertainty

Douglas B Sigourney, Samuel Chavez-Rosales, Paul Conn, Lance Garrison, Elizabeth Josephson, Debra Palka

https://doi.org/10.7287/peerj.preprints.27424v1

December 23, 2018 - Version: 4

Phylotocol: Promoting transparency and overcoming bias in phylogenetics

Melissa B DeBiasse, Joseph F Ryan

https://doi.org/10.7287/peerj.preprints.26585v4

December 5, 2018 - Version: 1

Scientific shortcomings in environmental impact statements internationally

Gerald G Singh, Jackie Lerner, Megan Mach, Cathryn Clarke Murray, Bernardo Ranieri, Guillaume Peterson St-Laurent, Janson Wong, Alice Guimaraes, Gustavo Yunda-Guarin, Terre Satterfield, Kai Chan

https://doi.org/10.7287/peerj.preprints.27409v1

December 24, 2018 - Version: 1

Coastal ecosystem monitoring using long-term satellite data records: A case study of Chilika Lake, Odisha

Vivek G., Santonu Goswami, Rabindra N. Samal, Saroj B. Choudhury

https://doi.org/10.7287/peerj.preprints.27448v1

December 4, 2018 - Version: 1

Genome-wide identification and transcriptional expression analysis of superoxide dismutase (SOD) family in wheat (Triticum aestivum)

Wenqiang J. Jiang, Lei Y. Yang, Yiqin H. He, Haotian Z. Zhang, Wei L. Li, Huaigu C. Chen, Dongfang M. Ma, Junliang Y. Yin

https://doi.org/10.7287/peerj.preprints.27402v1

December 17, 2018 - Version: 1

Reconstructing an unusual specimen of Haplocanthosaurus using a blend of physical and digital techniques

Mathew J Wedel, Jessie Atterholt, Jeff Macalino, Thierra Nalley, Gary Wisser, John Yasmer