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Mikhail Gelfand
Bronze Contributor
6,190 Points

Contributions by role

Author 705
Preprint Author 35
Reviewer 15
Editor 5,435

Contributions by subject area

Biodiversity
Developmental Biology
Evolutionary Studies
Marine Biology
Mathematical Biology
Bioinformatics
Genomics
Genetics
Zoology
Computational Biology
Cell Biology
Molecular Biology
Data Mining and Machine Learning
Data Science
Environmental Sciences
Microbiology
Plant Science
Ecology
Health Policy
Radiology and Medical Imaging
Ethical Issues
Medical Genetics
Agricultural Science
Biotechnology
Food Science and Technology
Statistics
Biogeography
Taxonomy
Evidence Based Medicine
Pathology
Synthetic Biology
Entomology
Public Health
Science and Medical Education
Science Policy
Oncology
Environmental Contamination and Remediation
Mycology
Biophysics
Veterinary Medicine
Virology
Epidemiology
Infectious Diseases
Nutrition
Animal Behavior
Natural Resource Management
Aquaculture, Fisheries and Fish Science
Diabetes and Endocrinology
Computational Science
Anatomy and Physiology
Allergy and Clinical Immunology
Orthopedics
Metabolic Sciences
Forestry
Biochemistry
Drugs and Devices
Gastroenterology and Hepatology
Bronze Contributor

Mikhail S Gelfand

PeerJ Editor, Author & Reviewer

Summary

Vice-Director for Science at the Kharkevich Institute for Information Transmission Problems. Professor of the Lomonosov Moscow State University, Skolkovo Institute of Science and Technology, and Higher School of Economics. Member of Academia Europaea. Recipient of the 2007 Baev Prize of the Russian Academy of Sciences. Member of Editorial Boards of PeerJ and Biology Direct.

Bioinformatics Computational Biology Evolutionary Studies Genomics

Editing Journals

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

Higher School of Economics
Moscow State University

Work details

Vice-Director for Science

Kharkevich Institute for Information Transmission Problems
Research and Training Center "Bioinformatics"
Research interests: - comparative genomics - metagenomics - metabolic reconstruction and functional annotation of genes and proteins - identification of regulatory signals - evolution of metabolic pathways and regulatory systems - alternative splicing - statistics of DNA sequences

Websites

  • ResearchGate

PeerJ Contributions

  • Articles 6
  • Preprints 1
  • Edited 30
December 2, 2020
Phospho-islands and the evolution of phosphorylated amino acids in mammals
Mikhail Moldovan, Mikhail S. Gelfand
https://doi.org/10.7717/peerj.10436 PubMed 33344082
November 30, 2020
A machine learning framework for the prediction of chromatin folding in Drosophila using epigenetic features
Michal B. Rozenwald, Aleksandra A. Galitsyna, Grigory V. Sapunov, Ekaterina E. Khrameeva, Mikhail S. Gelfand
https://doi.org/10.7717/peerj-cs.307
November 27, 2020
Adaptive evolution at mRNA editing sites in soft-bodied cephalopods
Mikhail Moldovan, Zoe Chervontseva, Georgii Bazykin, Mikhail S. Gelfand
https://doi.org/10.7717/peerj.10456 PubMed 33312772
August 10, 2020
Cumulative contact frequency of a chromatin region is an intrinsic property linked to its function
Margarita D. Samborskaia, Aleksandra Galitsyna, Ilya Pletenev, Anna Trofimova, Andrey A. Mironov, Mikhail S. Gelfand, Ekaterina E. Khrameeva
https://doi.org/10.7717/peerj.9566 PubMed 32864204
March 27, 2018
Genome rearrangements and phylogeny reconstruction in Yersinia pestis
Olga O. Bochkareva, Natalia O. Dranenko, Elena S. Ocheredko, German M. Kanevsky, Yaroslav N. Lozinsky, Vera A. Khalaycheva, Irena I. Artamonova, Mikhail S. Gelfand
https://doi.org/10.7717/peerj.4545 PubMed 29607260
August 10, 2016
Changes in segmentation and setation along the anterior/posterior axis of the homonomous trunk limbs of a remipede (Crustacea, Arthropoda)
Viacheslav N. Ivanenko, Ekaterina A. Antonenko, Mikhail S. Gelfand, Jill Yager, Frank D. Ferrari
https://doi.org/10.7717/peerj.2305 PubMed 27602276
September 5, 2017 - Version: 1
Genome rearrangements and phylogeny reconstruction in Yersinia pestis
Olga O Bochkareva, Natalia O Dranenko, Elena S Ocheredko, German M Kanevsky, Yaroslav N Lozinsky, Vera A Khalaycheva, Irena I Artamonova, Mikhail S Gelfand
https://doi.org/10.7287/peerj.preprints.3223v1

Academic Editor on

October 28, 2021
The inconsistent microbiota of Budu, the Malaysian fermented anchovy sauce, revealed through 16S amplicon sequencing
Muhammad Zarul Hanifah Md Zoqratt, Han Ming Gan
https://doi.org/10.7717/peerj.12345 PubMed 34760368
October 4, 2021
cdev: a ground-truth based measure to evaluate RNA-seq normalization performance
Diem-Trang Tran, Matthew Might
https://doi.org/10.7717/peerj.12233 PubMed 34707933
October 1, 2021
Shifts from cis-to trans-splicing of five mitochondrial introns in Tolypanthus maclurei
Runxian Yu, Chenyu Sun, Ying Liu, Renchao Zhou
https://doi.org/10.7717/peerj.12260 PubMed 34703675
May 3, 2021
Lactobacillus reuteri TSR332 and Lactobacillus fermentum TSF331 stabilize serum uric acid levels and prevent hyperuricemia in rats
Yi-Wei Kuo, Shih-Hung Hsieh, Jui-Fen Chen, Cheng-Ruei Liu, Ching-Wei Chen, Yu-Fen Huang, Hsieh-Hsun Ho
https://doi.org/10.7717/peerj.11209 PubMed 33986988
January 5, 2021
Bacterial meta-analysis of chicken cecal microbiota
Luis Alberto Chica Cardenas, Viviana Clavijo, Martha Vives, Alejandro Reyes
https://doi.org/10.7717/peerj.10571 PubMed 33505795
November 26, 2020
Evolutionary dynamics and geographic dispersal of beta coronaviruses in African bats
Babatunde O. Motayo, Olukunle Oluwapamilerin Oluwasemowo, Paul A. Akinduti
https://doi.org/10.7717/peerj.10434 PubMed 33304657
November 17, 2020
Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesity
Jose F. Garcia-Mazcorro, Jorge R. Kawas, Cuauhtemoc Licona Cassani, Susanne Mertens-Talcott, Giuliana Noratto
https://doi.org/10.7717/peerj.10372 PubMed 33240672
October 6, 2020
The highly rearranged mitochondrial genomes of three economically important scale insects and the mitochondrial phylogeny of Coccoidea (Hemiptera: Sternorrhyncha)
Hong-Ling Liu, Qing-Dong Chen, Song Chen, De-Qiang Pu, Zhi-Teng Chen, Yue-Yue Liu, Xu Liu
https://doi.org/10.7717/peerj.9932 PubMed 33083111
September 25, 2020
Analysis of the infant gut microbiome reveals metabolic functional roles associated with healthy infants and infants with atopic dermatitis using metaproteomics
Amornthep Kingkaw, Massalin Nakphaichit, Narissara Suratannon, Sunee Nitisinprasert, Chantha Wongoutong, Pantipa Chatchatee, Sucheewin Krobthong, Sawanya Charoenlappanit, Sittiruk Roytrakul, Wanwipa Vongsangnak
https://doi.org/10.7717/peerj.9988 PubMed 33033661
October 2, 2019
Whole genome sequencing of a novel, dichloromethane-fermenting Peptococcaceae from an enrichment culture
Sophie I. Holland, Richard J. Edwards, Haluk Ertan, Yie Kuan Wong, Tonia L. Russell, Nandan P. Deshpande, Michael J. Manefield, Matthew Lee
https://doi.org/10.7717/peerj.7775 PubMed 31592187
July 8, 2019
Evolutionary couplings detect side-chain interactions
Adam J. Hockenberry, Claus O. Wilke
https://doi.org/10.7717/peerj.7280 PubMed 31328041
June 14, 2019
Genome-scale metabolic reconstruction and metabolic versatility of an obligate methanotroph Methylococcus capsulatus str. Bath
Ankit Gupta, Ahmad Ahmad, Dipesh Chothwe, Midhun K. Madhu, Shireesh Srivastava, Vineet K. Sharma
https://doi.org/10.7717/peerj.6685 PubMed 31316867
June 7, 2019
Metabolic traits specific for lipid-overproducing strain of Mucor circinelloides WJ11 identified by genome-scale modeling approach
Nattapat Isarankura Na Ayudhya, Kobkul Laoteng, Yuanda Song, Asawin Meechai, Wanwipa Vongsangnak
https://doi.org/10.7717/peerj.7015 PubMed 31316868
May 23, 2019
Gene expression in Tribolium castaneum life stages: Identifying a species-specific target for pest control applications
Lindsey C. Perkin, Brenda Oppert
https://doi.org/10.7717/peerj.6946 PubMed 31198628
April 16, 2019
The synergistic effect of concatenation in phylogenomics: the case in Pantoea
Marike Palmer, Stephanus N. Venter, Alistair R. McTaggart, Martin P.A. Coetzee, Stephanie Van Wyk, Juanita R. Avontuur, Chrizelle W. Beukes, Gerda Fourie, Quentin C. Santana, Magriet A. Van Der Nest, Jochen Blom, Emma T. Steenkamp
https://doi.org/10.7717/peerj.6698 PubMed 31024760
February 8, 2019
Improved genome of Agrobacterium radiobacter type strain provides new taxonomic insight into Agrobacterium genomospecies 4
Han Ming Gan, Melvin V.L. Lee, Michael A. Savka
https://doi.org/10.7717/peerj.6366 PubMed 30775173
September 20, 2018
Preliminary analysis of New Zealand scampi (Metanephrops challengeri) diet using metabarcoding
Aimee L. van der Reis, Olivier Laroche, Andrew G. Jeffs, Shane D. Lavery
https://doi.org/10.7717/peerj.5641 PubMed 30258728
January 16, 2018
Local genic base composition impacts protein production and cellular fitness
Erik M. Quandt, Charles C. Traverse, Howard Ochman
https://doi.org/10.7717/peerj.4286 PubMed 29362699
December 11, 2017
Arsenophonus and Sodalis replacements shape evolution of symbiosis in louse flies
Eva Šochová, Filip Husník, Eva Nováková, Ali Halajian, Václav Hypša
https://doi.org/10.7717/peerj.4099 PubMed 29250466
September 29, 2017
Effect of the environment on horizontal gene transfer between bacteria and archaea
Clara A. Fuchsman, Roy Eric Collins, Gabrielle Rocap, William J. Brazelton
https://doi.org/10.7717/peerj.3865 PubMed 28975058
August 25, 2017
Chloroplast genome expansion by intron multiplication in the basal psychrophilic euglenoid Eutreptiella pomquetensis
Nadja Dabbagh, Matthew S. Bennett, Richard E. Triemer, Angelika Preisfeld
https://doi.org/10.7717/peerj.3725 PubMed 28852596
August 21, 2017
Expression differences in Aphidius ervi (Hymenoptera: Braconidae) females reared on different aphid host species
Gabriel I. Ballesteros, Jürgen Gadau, Fabrice Legeai, Angelica Gonzalez-Gonzalez, Blas Lavandero, Jean-Christophe Simon, Christian C. Figueroa
https://doi.org/10.7717/peerj.3640 PubMed 28852588
August 21, 2017
A systematic review of differential rate of use of the word “evolve” across fields
Nina Singh, Matthew T. Sit, Marissa K. Schutte, Gabriel E. Chan, Jeyson E. Aldana, Diana Cervantes, Clyde H. Himmelstein, Pamela J. Yeh
https://doi.org/10.7717/peerj.3639 PubMed 28852587
June 6, 2017
In silico analysis reveals widespread presence of three gene families, MAPK, MAPKK and MAPKKK, of the MAPK cascade from crop plants of Solanaceae in comparison to the distantly-related syntenic species from Rubiaceae, coffee
Hira Iftikhar, Nayab Naveed, Nasar Virk, Muhammad Faraz Bhatti, Fengming Song
https://doi.org/10.7717/peerj.3255 PubMed 28603666
March 29, 2017
Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis
Ning Ye, Xuelin Wang, Juan Li, Changwei Bi, Yiqing Xu, Dongyang Wu, Qiaolin Ye
https://doi.org/10.7717/peerj.3148 PubMed 28367378
February 2, 2017
Geography shapes the phylogeny of frailejones (Espeletiinae Cuatrec., Asteraceae): a remarkable example of recent rapid radiation in sky islands
Mauricio Diazgranados, Janet C. Barber
https://doi.org/10.7717/peerj.2968 PubMed 28168124
October 13, 2015
Expression of temperature-sensitive ion channel TRPM8 in sperm cells correlates with vertebrate evolution
Rakesh Kumar Majhi, Somdatta Saha, Ashutosh Kumar, Arijit Ghosh, Nirlipta Swain, Luna Goswami, Pratyush Mohapatra, Apratim Maity, Vivek Kumar Sahoo, Abhishek Kumar, Chandan Goswami
https://doi.org/10.7717/peerj.1310 PubMed 26500819
September 1, 2015
Genome analysis of quorum sensing Cedecea neteri SSMD04 leads to identification of its novel signaling synthase (cneI), cognate receptor (cneR) and an orphan receptor
Kian-Hin Tan, Jia-Yi Tan, Wai-Fong Yin, Kok-Gan Chan
https://doi.org/10.7717/peerj.1216 PubMed 26355540
September 19, 2013
Publication trends in neuroimaging of minimally conscious states
Alex Garnett, Grace Lee, Judy Illes
https://doi.org/10.7717/peerj.155 PubMed 24109545
February 26, 2013
The co-evolution of multiply-informed dispersal: information transfer across landscapes from neighbors and immigrants
Alexis S. Chaine, Stéphane Legendre, Jean Clobert
https://doi.org/10.7717/peerj.44 PubMed 23638381