WANT A PROFILE LIKE THIS?
Create my FREE Plan Or learn about other options
Hauke Smidt
PeerJ Editor & Author
4,380 Points

Contributions by role

Author 640
Preprint Author 70
Editor 3,670

Contributions by subject area

Genomics
Microbiology
Soil Science
Marine Biology
Mycology
Taxonomy
Ecology
Molecular Biology
Environmental Sciences
Entomology
Evolutionary Studies
Food Science and Technology
Agricultural Science
Bioinformatics
Biodiversity
Oncology
Infectious Diseases
Epidemiology
Global Health
Data Mining and Machine Learning
Plant Science
Genetics
Anthropology
Veterinary Medicine
Aquaculture, Fisheries and Fish Science
Biotechnology
Nutrition
Zoology
Women's Health
Computational Biology
Gastroenterology and Hepatology
Internal Medicine
Translational Medicine
Public Health
Environmental Impacts

Hauke Smidt

PeerJ Editor & Author

Summary

Personal Chair Complex Microbial Ecosystems and head of the Microbial Ecology Group at the Laboratory of Microbiology of Wageningen University, the Netherlands & guest Professor at Nanjing Agricultural University, Nanjing, China.

Biodiversity Biogeography Biosphere Interactions Biotechnology Computational Biology Ecology Ecotoxicology Genomics Microbiology

Editing Journals

Work details

Personal Chair

Wageningen University
Laboratory of Microbiology

PeerJ Contributions

  • Articles 5
  • Preprints 2
  • Edited 30
March 27, 2019
Associated bacteria of Botryococcus braunii (Chlorophyta)
Joao D. Gouveia, Jie Lian, Georg Steinert, Hauke Smidt, Detmer Sipkema, Rene H. Wijffels, Maria J. Barbosa
https://doi.org/10.7717/peerj.6610 PubMed 30944776
June 8, 2018
Archaeal and bacterial diversity and community composition from 18 phylogenetically divergent sponge species in Vietnam
Ton That Huu Dat, Georg Steinert, Nguyen Thi Kim Cuc, Hauke Smidt, Detmer Sipkema
https://doi.org/10.7717/peerj.4970 PubMed 29900079
September 11, 2017
Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine
Jacoline Gerritsen, Bastian Hornung, Bernadette Renckens, Sacha A.F.T. van Hijum, Vitor A.P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt
https://doi.org/10.7717/peerj.3698 PubMed 28924494
September 6, 2017
Fungi found in Mediterranean and North Sea sponges: how specific are they?
Mohd Azrul Naim, Hauke Smidt, Detmer Sipkema
https://doi.org/10.7717/peerj.3722 PubMed 28894639
February 1, 2017
Successive DNA extractions improve characterization of soil microbial communities
Mauricio R. Dimitrov, Annelies J. Veraart, Mattias de Hollander, Hauke Smidt, Johannes A. van Veen, Eiko E. Kuramae
https://doi.org/10.7717/peerj.2915 PubMed 28168105
June 24, 2017 - Version: 1
Fungi found in Mediterranean and North Sea sponges: How specific are they?
Mohd Azrul Naim, Hauke Smidt, Detmer Sipkema
https://doi.org/10.7287/peerj.preprints.3049v1
April 11, 2017 - Version: 1
Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine
Jacoline Gerritsen, Bastian Hornung, Bernadette Renckens, Sacha A.F.T. van Hijum, Vitor A.P. Martins dos Santos, Ger T. Rijkers, Peter J. Schaap, Willem M. de Vos, Hauke Smidt
https://doi.org/10.7287/peerj.preprints.2918v1

Academic Editor on

March 21, 2019
Human gut resistome can be country-specific
Yao Xia, Yanshan Zhu, Qier Li, Jiahai Lu
https://doi.org/10.7717/peerj.6389 PubMed 30923648
November 2, 2018
Structure, dynamics and predicted functional role of the gut microbiota of the blue (Haliotis fulgens) and yellow (H. corrugata) abalone from Baja California Sur, Mexico
Francesco Cicala, José Alejandro Cisterna-Céliz, James D. Moore, Axayácatl Rocha-Olivares
https://doi.org/10.7717/peerj.5830 PubMed 30405968
October 30, 2018
Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management
Muhammad Zarul Hanifah Md Zoqratt, Wilhelm Wei Han Eng, Binh Thanh Thai, Christopher M. Austin, Han Ming Gan
https://doi.org/10.7717/peerj.5826 PubMed 30397546
September 24, 2018
Successful transplantation of guinea pig gut microbiota in mice and its effect on pneumonic plague sensitivity
Xiang Li, Zhengchao Li, Yuxiao Chang, Fengyi Hou, Zongyu Huang, Han Ni, Ruifu Yang, Yujing Bi
https://doi.org/10.7717/peerj.5637 PubMed 30280023
July 17, 2018
Short and long-term effects of a synbiotic on clinical signs, the fecal microbiome, and metabolomic profiles in healthy research cats receiving clindamycin: a randomized, controlled trial
Jacqueline C. Whittemore, Jennifer E. Stokes, Nicole L. Laia, Joshua M. Price, Jan S. Suchodolski
https://doi.org/10.7717/peerj.5130 PubMed 30038854
June 13, 2018
Dynamic succession of substrate-associated bacterial composition and function during Ganoderma lucidum growth
Bo Zhang, Lijuan Yan, Qiang Li, Jie Zou, Hao Tan, Wei Tan, Weihong Peng, Xiaolin Li, Xiaoping Zhang
https://doi.org/10.7717/peerj.4975 PubMed 29915697
May 23, 2018
Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota
Katti R. Horng, Holly H. Ganz, Jonathan A. Eisen, Stanley L. Marks
https://doi.org/10.7717/peerj.4827 PubMed 29844978
March 12, 2018
Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial communities associated with antibiotic treatment
Katherine E. Dahlhausen, Ladan Doroud, Alana J. Firl, Adam Polkinghorne, Jonathan A. Eisen
https://doi.org/10.7717/peerj.4452 PubMed 29576947
January 19, 2018
CoMiniGut—a small volume in vitro colon model for the screening of gut microbial fermentation processes
Maria Wiese, Bekzod Khakimov, Sebastian Nielsen, Helena Sørensen, Frans van den Berg, Dennis Sandris Nielsen
https://doi.org/10.7717/peerj.4268 PubMed 29372119
January 10, 2018
Evidence-based design and evaluation of a whole genome sequencing clinical report for the reference microbiology laboratory
Anamaria Crisan, Geoffrey McKee, Tamara Munzner, Jennifer L. Gardy
https://doi.org/10.7717/peerj.4218 PubMed 29340235
January 8, 2018
Is there a link between aging and microbiome diversity in exceptional mammalian longevity?
Graham M. Hughes, John Leech, Sébastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
https://doi.org/10.7717/peerj.4174 PubMed 29333342
December 22, 2017
Agricultural constraints on microbial resource use and niche breadth in drainage ditches
Ellard R. Hunting, S. Henrik Barmentlo, Maarten Schrama, Peter M. van Bodegom, Yujia Zhai, Martina G. Vijver
https://doi.org/10.7717/peerj.4175 PubMed 29302393
November 16, 2017
5-Fluorouracil and irinotecan (SN-38) have limited impact on colon microbial functionality and composition in vitro
Eline Vanlancker, Barbara Vanhoecke, Andrea Stringer, Tom Van de Wiele
https://doi.org/10.7717/peerj.4017 PubMed 29158969
October 20, 2017
Oxygen-limited metabolism in the methanotroph Methylomicrobium buryatense 5GB1C
Alexey Gilman, Yanfen Fu, Melissa Hendershott, Frances Chu, Aaron W. Puri, Amanda Lee Smith, Mitchell Pesesky, Rose Lieberman, David A.C. Beck, Mary E. Lidstrom
https://doi.org/10.7717/peerj.3945 PubMed 29062611
March 7, 2017
Sorghum and wheat differentially affect caecal microbiota and associated performance characteristics of meat chickens
Eduardo Crisol-Martínez, Dragana Stanley, Mark S. Geier, Robert J. Hughes, Robert J. Moore
https://doi.org/10.7717/peerj.3071 PubMed 28286717
October 6, 2016
Metagenomic survey of methanesulfonic acid (MSA) catabolic genes in an Atlantic Ocean surface water sample and in a partial enrichment
Ana C. Henriques, Rui M.S. Azevedo, Paolo De Marco
https://doi.org/10.7717/peerj.2498 PubMed 27761315
September 22, 2016
Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics
Christian Rinke, Serene Low, Ben J. Woodcroft, Jean-Baptiste Raina, Adam Skarshewski, Xuyen H. Le, Margaret K. Butler, Roman Stocker, Justin Seymour, Gene W. Tyson, Philip Hugenholtz
https://doi.org/10.7717/peerj.2486 PubMed 27688978
May 5, 2016
A low dose of an organophosphate insecticide causes dysbiosis and sex-dependent responses in the intestinal microbiota of the Japanese quail (Coturnix japonica)
Eduardo Crisol-Martínez, Laura T. Moreno-Moyano, Ngare Wilkinson, Tanka Prasai, Philip H. Brown, Robert J. Moore, Dragana Stanley
https://doi.org/10.7717/peerj.2002 PubMed 27168998
April 28, 2016
Bacteria associated with human saliva are major microbial components of Ecuadorian indigenous beers (chicha)
Ana L. Freire, Sonia Zapata, Juan Mosquera, Maria Lorena Mejia, Gabriel Trueba
https://doi.org/10.7717/peerj.1962 PubMed 27168974
March 8, 2016
Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon
Florent E. Angly, Olga Pantos, Thomas C. Morgan, Virginia Rich, Hemerson Tonin, David G. Bourne, Philip Mercurio, Andrew P. Negri, Gene W. Tyson
https://doi.org/10.7717/peerj.1758 PubMed 26989611
December 17, 2015
Biogeographic variation in the microbiome of the ecologically important sponge, Carteriospongia foliascens
Heidi M. Luter, Stefanie Widder, Emmanuelle S. Botté, Muhammad Abdul Wahab, Stephen Whalan, Lucas Moitinho-Silva, Torsten Thomas, Nicole S. Webster
https://doi.org/10.7717/peerj.1435 PubMed 26713229
August 27, 2015
Can 13C stable isotope analysis uncover essential amino acid provisioning by termite-associated gut microbes?
Paul A. Ayayee, Susan C. Jones, Zakee L. Sabree
https://doi.org/10.7717/peerj.1218 PubMed 26336647
June 11, 2015
Pyrosequencing revealed shifts of prokaryotic communities between healthy and disease-like tissues of the Red Sea sponge Crella cyathophora
Zhao-Ming Gao, Yong Wang, Ren-Mao Tian, On On Lee, Yue Him Wong, Zenon B. Batang, Abdulaziz Al-Suwailem, Feras F. Lafi, Vladimir B. Bajic, Pei-Yuan Qian
https://doi.org/10.7717/peerj.890 PubMed 26082867
March 26, 2015
Capsules of the diatom Achnanthidium minutissimum arise from fibrillar precursors and foster attachment of bacteria
Katrin Leinweber, Peter G. Kroth
https://doi.org/10.7717/peerj.858 PubMed 25834772
February 26, 2015
Wild plant species growing closely connected in a subalpine meadow host distinct root-associated bacterial communities
Kristin Aleklett, Jonathan W. Leff, Noah Fierer, Miranda Hart
https://doi.org/10.7717/peerj.804 PubMed 25755932
February 17, 2015
Diagnosis of bacterial vaginosis by a new multiplex peptide nucleic acid fluorescence in situ hybridization method
António Machado, Joana Castro, Tatiana Cereija, Carina Almeida, Nuno Cerca
https://doi.org/10.7717/peerj.780 PubMed 25737820
August 26, 2014
A survey on cultivable heterotrophic bacteria inhabiting a thermally unstratified water column in an Atlantic Rainforest lake
Cláudia I. Lima-Bittencourt, Patrícia S. Costa, Mariana P. Reis, Alexandre B. Santos, Francisco A.R. Barbosa, Jean L. Valentin, Fabiano L. Thompson, Edmar Chartone-Souza, Andréa M.A. Nascimento
https://doi.org/10.7717/peerj.478 PubMed 25237594
August 5, 2014
RIM-DB: a taxonomic framework for community structure analysis of methanogenic archaea from the rumen and other intestinal environments
Henning Seedorf, Sandra Kittelmann, Gemma Henderson, Peter H. Janssen
https://doi.org/10.7717/peerj.494 PubMed 25165621
July 8, 2014
Local domestication of lactic acid bacteria via cassava beer fermentation
Alese M. Colehour, James F. Meadow, Melissa A. Liebert, Tara J. Cepon-Robins, Theresa E. Gildner, Samuel S. Urlacher, Brendan J.M. Bohannan, J. Josh Snodgrass, Lawrence S. Sugiyama
https://doi.org/10.7717/peerj.479 PubMed 25071997
December 23, 2013
Succession of the turkey gastrointestinal bacterial microbiome related to weight gain
Jessica L. Danzeisen, Alamanda J. Calvert, Sally L. Noll, Brian McComb, Julie S. Sherwood, Catherine M. Logue, Timothy J. Johnson
https://doi.org/10.7717/peerj.237 PubMed 24432198