PeerJ Preprints - Table of Contents

May 16, 2019 - Version: 1

Hannes L Rost

https://doi.org/10.7287/peerj.preprints.27736v1

May 20, 2019 - Version: 2

Standardized representation of the LIDC annotations using DICOM

Andrey Fedorov, Matthew Hancock, David Clunie, Mathias Brochhausen, Jonathan Bona, Justin Kirby, John Freymann, Steve Pieper, Hugo Aerts, Ron Kikinis, Fred Prior

https://doi.org/10.7287/peerj.preprints.27378v2

May 14, 2019 - Version: 2

VCF2PopTree: a one-click client-side software to construct population phylogeny from genome-wide SNPs

Sankar Subramanian, Umayal Ramasamy, David Chen

https://doi.org/10.7287/peerj.preprints.27682v2

May 29, 2019 - Version: 1

OpenMS for open source analysis of mass spectrometric data

Oliver Alka, Timo Sachsenberg, Leon Bichmann, Julianus Pfeuffer, Hendrik Weisser, Samuel Wein, Eugen Netz, Marc Rurik, Oliver Kohlbacher, Hannes Rost

https://doi.org/10.7287/peerj.preprints.27766v1

May 24, 2019 - Version: 1

CAM: An alignment-free method to recover phylogenies using codon aversion motifs

Justin B Miller, Lauren M McKinnon, Michael F Whiting, Perry G Ridge

https://doi.org/10.7287/peerj.preprints.27756v1

May 6, 2019 - Version: 1

Available software for meta-analyses of genome-wide expression studies

Diego A Forero

https://doi.org/10.7287/peerj.preprints.27708v1

May 17, 2019 - Version: 1

A Sparse-Modeling based approach for Class-Specific feature selection

Davide Nardone, Angelo Ciaramella, Antonino Staiano

https://doi.org/10.7287/peerj.preprints.27740v1

May 26, 2019 - Version: 1

Genome-wide identification of SNARE gene in plant and expression pattern of TaSNARE in wheat

Guanghao Wang, Deyu Long, Fagang Yu, Hong Zhang, Chunhuan Chen, Yajuan Wang, Wanquan Ji

https://doi.org/10.7287/peerj.preprints.27758v1

May 13, 2019 - Version: 1

Pangenomic type III effector database of the plant pathogenic Ralstonia spp.

Cyrus Raja Rubenstein Sabbagh, Sébastien Carrère, Fabien Lonjon, Fabienne Vailleau, Alberto P Macho, Stephane Genin, Nemo Peeters

https://doi.org/10.7287/peerj.preprints.27726v1

May 10, 2019 - Version: 1

Evaluation of niche adaptation features by genome data mining approach of Escherichia coli urinary and gastrointestinal strains

Thiago GS Paim, Gustavo E Sambrano, Keli C Reiter, Fernando H Sant'Anna, Renata Soares, Mariana Mott, Samuel P Cibulski, Pedro A d'Azevedo

https://doi.org/10.7287/peerj.preprints.27720v1

May 2, 2019 - Version: 1

miRDRN – miRNA Disease Regulatory Network: A tool for exploring disease and tissue-specific microRNA regulatory networks

Hsueh-Chuan Liu, Yi-Shian Peng, Hoong-Chien Lee

https://doi.org/10.7287/peerj.preprints.27699v1

May 13, 2019 - Version: 1

The key genes involved in herpes simplex virus-1 corneal infection-induced acute hepatitis

Kai Hu, Jinlong Li, Xianwen Yuan

https://doi.org/10.7287/peerj.preprints.27724v1

May 18, 2019 - Version: 1

Genome-wide investigation of malate dehydrogenase gene family in poplar (Populus trichocarpa) and their expression analysis under salt stress

Xinghao Chen, Jun Zhang, Chao Zhang, Shijie Wang, Minsheng Yang

https://doi.org/10.7287/peerj.preprints.27742v1

May 2, 2019 - Version: 1

Phylogenetic analysis of Type IX Secretion System (T9SS) protein components revealed that PorR undergoes horizontal gene transfer

Reeki Emrizal, Nor Azlan Nor Muhammad

https://doi.org/10.7287/peerj.preprints.27700v1

May 23, 2019 - Version: 1

HiCEnterprise: Identifying long range chromosomal contacts in HiC data

Hanna Kranas, Irina Tuszyńska, Bartek Wilczynski

https://doi.org/10.7287/peerj.preprints.27753v1

May 2, 2019 - Version: 2

ProPheno 1.0: An online dataset for accelerating the complete characterization of the human protein-phenotype landscape in biomedical literature

Morteza Pourreza Shahri, Indika Kahanda

https://doi.org/10.7287/peerj.preprints.27479v2

May 19, 2019 - Version: 1

Image based effective feature generation for protein structural class and ligand binding prediction

Nafees Sadique, Al Amin Neaz Ahmed, Md Tajul Islam, Md. Nawshad Pervage, Swakkhar Shatabda

https://doi.org/10.7287/peerj.preprints.27743v1

May 9, 2019 - Version: 1

Structure encoding in DNA

Antony Van der Mude

https://doi.org/10.7287/peerj.preprints.27714v1

May 22, 2019 - Version: 1

Deep transcriptomic analysis of Chromera velia under Mercury-stress condition

Abdoallah Sharaf, Roberto De Michele, Ayush Sharma, Miroslav Oborník

https://doi.org/10.7287/peerj.preprints.27750v1

May 26, 2019 - Version: 1

Understanding the chemical basis for the preferential ionization of specific biomolecules in mass spectrometry analysis of microbial cells

Wenfa Ng

https://doi.org/10.7287/peerj.preprints.27759v1

May 8, 2019 - Version: 1

Biochemical traits that Escherichia coli evolved during its adaption to the gastrointestinal tract of humans

Wenfa Ng

https://doi.org/10.7287/peerj.preprints.27713v1

May 30, 2019 - Version: 1

Proposal of conceptual model for the mechanism underpinning evolution of operon as pathway gene organizer in bacterial genome

Wenfa Ng

https://doi.org/10.7287/peerj.preprints.27767v1

May 2019

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