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Evaluation of niche adaptation features by genome data mining approach of Escherichia coli urinary and gastrointestinal strains

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41 days ago
Evaluation of niche adaptation features by genome data mining approach of Escherichia coli urinary and gastrointestinal strains https://t.co/ESeXm5u53O https://t.co/An2KIju2Xl
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Supplemental Information

Cluster of Orthologue Genes

DOI: 10.7287/peerj.preprints.27720v1/supp-1

Resistance genes in silico prediction

DOI: 10.7287/peerj.preprints.27720v1/supp-4

Virulence factors predicted inside of phage sequences

DOI: 10.7287/peerj.preprints.27720v1/supp-6

Virulence factors predicted inside of phage sequences

DOI: 10.7287/peerj.preprints.27720v1/supp-7

Virulence factors predicted inside of phage sequences (statistics)

DOI: 10.7287/peerj.preprints.27720v1/supp-8

Resistance genes in silico prediction

DOI: 10.7287/peerj.preprints.27720v1/supp-9

Resistance genes in silico prediction

DOI: 10.7287/peerj.preprints.27720v1/supp-10

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Thiago GS Paim conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Gustavo E Sambrano conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, approved the final draft.

Keli C Reiter authored or reviewed drafts of the paper.

Fernando H Sant'Anna authored or reviewed drafts of the paper.

Renata Soares contributed reagents/materials/analysis tools.

Mariana Mott contributed reagents/materials/analysis tools.

Samuel P Cibulski performed the experiments.

Pedro A d'Azevedo analyzed the data, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper, approved the final draft.

Ethics

The following information was supplied relating to ethical approvals (i.e., approving body and any reference numbers):

The Universidade Federal de Ciências da Saúde de Porto Alegre granted Ethical approval to carry out the study within its facilities (Ethical Application Ref: 502.474)

Data Deposition

The following information was supplied regarding data availability:

The raw measurements are provided in the supplementary files.

Funding

This work, including the efforts of Pedro Alves d’Azevedo, was funded by MCTI | Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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