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Yuriy Orlov
Silver Contributor
15,700 Points

Contributions by role

Author 635
Reviewer 125
Editor 14,940

Contributions by subject area

Agricultural Science
Food Science and Technology
Genetics
Plant Science
Climate Change Biology
Genomics
Molecular Biology
Oncology
Medical Genetics
Bioinformatics
Computational Biology
Evolutionary Studies
Parasitology
Dermatology
Epidemiology
Infectious Diseases
Global Health
Public Health
COVID-19
Biotechnology
Soil Science
Mycology
Entomology
Otorhinolaryngology
Science and Medical Education
Data Mining and Machine Learning
Zoology
Hematology
Data Science
Synthetic Biology
Cell Biology
Marine Biology
Biodiversity
Biophysics
Virology
Computational Science
Neuroscience
Human-Computer Interaction
Animal Behavior
Toxicology
Nutrition
Psychiatry and Psychology
Pathology
Biogeography
Conservation Biology
Ecology
Ecosystem Science
Biochemistry
Cognitive Disorders
Veterinary Medicine
Anesthesiology and Pain Management
Clinical Trials
Natural Resource Management
Environmental Impacts
Bioengineering
Mathematical Biology
Cardiology
Health Policy
Pediatrics
Developmental Biology
Gastroenterology and Hepatology
Ophthalmology
Drugs and Devices
Pharmacology
Urology
Diabetes and Endocrinology
Microbiology
Neurology
Histology
Dentistry
Forestry
Gynecology and Obstetrics
Aquaculture, Fisheries and Fish Science
Freshwater Biology
Metabolic Sciences
HIV
Statistics
Biomechanics
Atmospheric Chemistry
Population Biology
Mental Health
Respiratory Medicine
Coupled Natural and Human Systems
Women's Health
Radiology and Medical Imaging
Ecotoxicology
Environmental Contamination and Remediation
Silver Contributor

Yuriy L Orlov

PeerJ Author & Reviewer

Summary

Professor of the Russian Academy of Sciences (2016). Professor at the Digital Health Center, I.M.Sechenov First Moscow State Medical University (Sechenov University), Moscow, Russia. Affiliated with Peoples' Friendship University of Russia in Moscow (RUDN). Previously had work at Genome Institute of Singapore (2006-2011).
Main science interests are sequencing data analysis, bioinformatics, e-health and biomedical applications.
Other organizational and editorial work: Program Committee member of BGRS\SB (Bioinformatics of Genome Regulation and Structure \Systems Biology) conferences series (1998-2024).

Agricultural Science Bioinformatics Computational Biology Data Mining & Machine Learning Evolutionary Studies Genetics Genomics Health Policy Mathematical Biology Molecular Biology Neuroscience Omics Technologies Plant Science

Past or current institution affiliations

Novosibirsk State University
People' s Friendship University of Russia

Work details

Professor

I.M Sechenov First Moscow State Medical University, Moscow, Russia
April 2019
The Digital Health Institute
Bioinformatics and medical informatics

Senior researcher

People' s Friendship University of Russia
May 2020
Agrarian and Technological Institute
Professor at the Agrarian and Technological Institute of RUDN (Peoples' Friendship University of Russia) named after Patrice Lumumba

Professor

Novosibirsk State University
Life Sciences
Head of Laboratory of Computer Genomics at Novosibirsk State University, Novosibirsk, Russia.

Researcher

Genome Institute of Singapore, A-STAR
January 2006 - January 2011
Computer Science
Bioinformatics group

Websites

  • Google Scholar
  • LinkedIn
  • ResearcherID
  • ResearchGate
  • Elibrary
  • PubMed Search
  • Microsoft Academic Search
  • Laboratory of Computer Genomics Lab at NSU
  • Publons

PeerJ Contributions

  • Articles 8
  • Edited 117
  • Reviewed 1
January 7, 2025
Deregulation mechanisms and therapeutic opportunities of p53-responsive microRNAs in diffuse large B-cell lymphoma
Elena N. Voropaeva, Yuriy L. Orlov, Anastasia B. Loginova, Olga B. Seregina, Vladimir N. Maksimov, Tatiana I. Pospelova
https://doi.org/10.7717/peerj.18661 PubMed 39802185
July 18, 2024
Associations between SNPs and vegetation indices: unraveling molecular insights for enhanced cultivation of tea plant (Camellia sinensis (L.) O. Kuntze)
Daria Kuzmina, Lyudmila S. Malyukova, Karina Manakhova, Tatyana Kovalenko, Jaroslava Fedorina, Aleksandra O. Matskiv, Alexey V. Ryndin, Maya V. Gvasaliya, Yuriy L. Orlov, Lidiia S. Samarina
https://doi.org/10.7717/peerj.17689 PubMed 39670092
August 29, 2022
Effects of exogenous calcium on the drought response of the tea plant (Camellia sinensis (L.) Kuntze)
Lyudmila S. Malyukova, Natalia G. Koninskaya, Yuriy L. Orlov, Lidiia S. Samarina
https://doi.org/10.7717/peerj.13997 PubMed 36061747
June 4, 2021
Estimation of the probability of daily fluctuations of incidence of COVID-19 according to official data
Andrey Gerasimov, Elena Galkina, Elena Danilova, Irina Ikonnikova, Tamara Novoselova, Yuriy L. Orlov, Irina Senenycheva
https://doi.org/10.7717/peerj.11049 PubMed 34141462
March 11, 2021
Molecular characteristic of treatment failure clinical isolates of Leishmania major
Gilda Eslami, Samira Hatefi, Vahid Ramezani, Masoud Tohidfar, Tatyana V. Churkina, Yuriy L. Orlov, Saeedeh Sadat Hosseini, Mohammad Javad Boozhmehrani, Mahmood Vakili
https://doi.org/10.7717/peerj.10969 PubMed 33763300
January 5, 2021
In situ dissecting the evolution of gene duplication with different histone modification patterns based on high-throughput data analysis in Arabidopsis thaliana
Jingjing Wang, Yuriy L. Orlov, Xue Li, Yincong Zhou, Yongjing Liu, Chunhui Yuan, Ming Chen
https://doi.org/10.7717/peerj.10426 PubMed 33505781
November 12, 2020
The rs78378222 prevalence and the copy loss of the protective allele A in the tumor tissue of diffuse large B-cell lymphoma
Elena N. Voropaeva, Yuriy L. Orlov, Tatiana I. Pospelova, Anna A. Gurageva, Mikhail I. Voevoda, Vladimir N. Maksimov, Olga B. Seregina, Maria I. Churkina
https://doi.org/10.7717/peerj.10335 PubMed 33240649
August 28, 2020
Physiological, biochemical and genetic responses of Caucasian tea (Camellia sinensis (L.) Kuntze) genotypes under cold and frost stress
Lidiia S. Samarina, Lyudmila S. Malyukova, Alexander M. Efremov, Taisiya A. Simonyan, Alexandra O. Matskiv, Natalia G. Koninskaya, Ruslan S. Rakhmangulov, Maya V. Gvasaliya, Valentina I. Malyarovskaya, Alexey V. Ryndin, Yuriy L. Orlov, Wei Tong, Magda-Viola Hanke
https://doi.org/10.7717/peerj.9787 PubMed 32923182

Academic Editor on

October 3, 2024
PotatoG-DKB: a potato gene-disease knowledge base mined from biological literature
Congjiao Xie, Jing Gao, Junjie Chen, Xuyang Zhao
https://doi.org/10.7717/peerj.18202 PubMed 39372719
September 19, 2024
Sandy loam soil maintains better physicochemical parameters and more abundant beneficial microbiomes than clay soil in Stevia rebaudiana cultivation
Xinjuan Xu, Qingyun Luo, Ningnan Zhang, Yingxia Wu, Qichao Wei, Zhongwen Huang, Caixia Dong
https://doi.org/10.7717/peerj.18010 PubMed 39308829
September 11, 2024
Integration of full-length Iso-Seq, Illumina RNA-Seq, and flavor testing reveals potential differences in ripened fruits between two Passiflora edulis cultivars
Yao Teng, Ye Wang, Sunjian Zhang, Xiaoying Zhang, Jiayu Li, Fengchan Wu, Caixia Chen, Xiuqin Long, Anding Li
https://doi.org/10.7717/peerj.17983 PubMed 39282122
August 6, 2024
Localization of potato browning resistance genes based on BSA-seq technology
Haiyan Wang, Ze Pang, Lichun Wang, Guokui Tian, Fengyun Li, Yang Pan, Kaixin Ding
https://doi.org/10.7717/peerj.17831 PubMed 39131626
July 30, 2024
Genome-wide identification and evolution of the SAP gene family in sunflower (Helianthus annuus L.) and expression analysis under salt and drought stress
Chun Zhang, Xiaohong Zhang, Yue Wu, Xiang Li, Chao Du, Na Di, Yang Chen
https://doi.org/10.7717/peerj.17808 PubMed 39099650
July 10, 2024
Investigating the regulatory role of HvANT2 in anthocyanin biosynthesis through protein–motif interaction in Qingke
Yan Wang, Lin Chen, Youhua Yao, Lupeng Chen, Yongmei Cui, Likun An, Xin Li, Yixiong Bai, Xiaohua Yao, Kunlun Wu
https://doi.org/10.7717/peerj.17736 PubMed 39006012
February 29, 2024
Construction and validation of m6A-related diagnostic model for psoriasis
Jing Liu, Youlin Wang, Yu Sheng, Limin Cai, Yongchen Wang
https://doi.org/10.7717/peerj.17027 PubMed 38436011
October 6, 2023
A retrospective study: analysis of the relationship between lactate dehydrogenase and castration-resistant prostate cancer based on restricted cubic spline model
Ruiying Qiu, Ke Bu, Hengqing An, Ning Tao
https://doi.org/10.7717/peerj.16158 PubMed 37818332
October 2, 2023
Integration of exome-seq and mRNA-seq using DawnRank, identified genes involved in innate immunity as drivers of breast cancer in the Indian cohort
Snehal Nirgude, Sagar Desai, Vartika Khanchandani, Vidhyavathy Nagarajan, Jayanti Thumsi, Bibha Choudhary
https://doi.org/10.7717/peerj.16033 PubMed 37810779
October 2, 2023
Long non-coding RNA NMRAL2P promotes glycolysis and reduces ROS in head and neck tumors by interacting with the ENO1 protein and promoting GPX2 transcription
Qian Nie, Huan Cao, JianWang Yang, Tao Liu, BaoShan Wang
https://doi.org/10.7717/peerj.16140 PubMed 37810778
September 15, 2023
Progress in the mechanism of autophagy and traditional Chinese medicine herb involved in alcohol-related liver disease
Wenwen Han, Haiyu Li, Hanqi Jiang, Hang Xu, Yifeng Lin, Jiahuan Chen, Chenchen Bi, Zheng Liu
https://doi.org/10.7717/peerj.15977 PubMed 37727691
September 12, 2023
Change characteristics and influencing factors of grassland degradation in adjacent areas of the Qinghai–Tibet Plateau and suggestions for grassland restoration
Gang Lin, Limin Hua, Yanze Shen, Yajiao Zhao
https://doi.org/10.7717/peerj.16084 PubMed 37719111
August 25, 2023
Identification of novel key markers that are induced during traumatic brain injury in mice
Yucheng Li, Ningbo Li, Changjiao Luan, Yunlong Pei, Qingbin Zheng, Bingchun Yan, Xingjie Ma, Weili Liu
https://doi.org/10.7717/peerj.15981 PubMed 37645012
July 14, 2023
First report of the ectomycorrhizal fungal community associated with two herbaceous plants in Inner Mongolia, China
Yongjun Fan, Simin Xiang, Jing Wang, Xuan Zhang, Zhimin Yu, Shupeng Zhu, Meng Lv, Lijun Bai, Luyu Han, Jianjun Ma, Yonglong Wang
https://doi.org/10.7717/peerj.15626 PubMed 37465152
June 30, 2023
Comparative analysis of machine learning approaches for predicting respiratory virus infection and symptom severity
Yunus Emre Işık, Zafer Aydın
https://doi.org/10.7717/peerj.15552 PubMed 37404475
April 3, 2023
Understanding the response in Pugionium cornutum (L.) Gaertn. seedling leaves under drought stress using transcriptome and proteome integrated analysis
Ping Wang, Zhaoxin Wu, Guihua Chen, Xiaojing Yu
https://doi.org/10.7717/peerj.15165 PubMed 37033724
March 31, 2023
Machine learning aided multiscale modelling of the HIV-1 infection in the presence of NRTI therapy
Huseyin Tunc, Murat Sari, Seyfullah Kotil
https://doi.org/10.7717/peerj.15033 PubMed 37020854
February 2, 2023
The contents of essential and toxic metals in coffee beans and soil in Dale Woreda, Sidama Regional State, Southern Ethiopia
Yohannes Seifu Berego, Solomon Sorsa Sota, Mihret Ulsido, Embialle Mengistie Beyene
https://doi.org/10.7717/peerj.14789 PubMed 36751640
December 15, 2022
Comparison of rule- and ordinary differential equation-based dynamic model of DARPP-32 signalling network
Emilia M. Wysocka, Matthew Page, James Snowden, T. Ian Simpson
https://doi.org/10.7717/peerj.14516 PubMed 36540795
November 10, 2022
bestDEG: a web-based application automatically combines various tools to precisely predict differentially expressed genes (DEGs) from RNA-Seq data
Unitsa Sangket, Prasert Yodsawat, Jiratchaya Nuanpirom, Ponsit Sathapondecha
https://doi.org/10.7717/peerj.14344 PubMed 36389403
September 22, 2022
Genome-wide identification, characterization and expression analysis of HAK genes and decoding their role in responding to potassium deficiency and abiotic stress in Medicago truncatula
Yanxue Zhao, Lei Wang, Pengcheng Zhao, Zhongjie Liu, Siyi Guo, Yang Li, Hao Liu
https://doi.org/10.7717/peerj.14034 PubMed 36168431
August 30, 2022
Proteomic profile of serum from patients with schizophrenia spectrum disorders
Elena Dmitrieva, Liudmila Smirnova, Alexander Seregin, Victor Zgoda, Arkadij Semke, Svetlana Ivanova
https://doi.org/10.7717/peerj.13907 PubMed 36061748
July 11, 2022
Wide space sowing achieved high productivity and effective nitrogen use of irrigated wheat in South Shanxi, China
Qiang Wang, Hafeez Noor, Min Sun, Aixia Ren, Yu Feng, Peng Qiao, Jingjing Zhang, Zhiqiang Gao
https://doi.org/10.7717/peerj.13727 PubMed 35846882
June 13, 2022
Effects of turning over intensity on fatty acid metabolites in postharvest leaves of Tieguanyin oolong tea (Camellia sinensis)
Zixin Ni, Qingyang Wu, Ziwei Zhou, Yun Yang, Qingcai Hu, Huili Deng, Yucheng Zheng, Wanjun Bi, Zhenzhang Liu, Yun Sun
https://doi.org/10.7717/peerj.13453 PubMed 35722255
May 11, 2022
DeepNC: a framework for drug-target interaction prediction with graph neural networks
Huu Ngoc Tran Tran, J. Joshua Thomas, Nurul Hashimah Ahamed Hassain Malim
https://doi.org/10.7717/peerj.13163 PubMed 35578674
May 6, 2022
Development of nitrogen efficiency screening system in alfalfa (Medicago sativa L.) and analysis of alfalfa nitrogen efficiency types
Xiaojing Liu, Yajiao Zhao, Feng Hao
https://doi.org/10.7717/peerj.13343 PubMed 35547186
February 22, 2022
SMRT sequencing of full-length transcriptome and gene expression analysis in two chemical types of Pogostemon cablin (Blanco) Benth.
Hongyi Zhang, Wenjing Deng, Changhua Lu, Mengling He, Hanjing Yan
https://doi.org/10.7717/peerj.12940 PubMed 35223208
January 13, 2022
Genome-wide identification and evolution of WNK kinases in Bambusoideae and transcriptional profiling during abiotic stress in Phyllostachys edulis
RongXiu Liu, Naresh Vasupalli, Dan Hou, Antony Stalin, Hantian Wei, Huicong Zhang, Xinchun Lin
https://doi.org/10.7717/peerj.12718 PubMed 35070502
January 5, 2022
Highly divergent isolates of chrysanthemum virus B and chrysanthemum virus R infecting chrysanthemum in Russia
Sergei N. Chirkov, Anna Sheveleva, Anastasiya Snezhkina, Anna Kudryavtseva, George Krasnov, Alexander Zakubanskiy, Irina Mitrofanova
https://doi.org/10.7717/peerj.12607 PubMed 35036085
December 23, 2021
ReGSP: a visualized application for homology-based gene searching and plotting using multiple reference sequences
Girum Fitihamlak Ejigu, Gangman Yi, Jong Im Kim, Jaehee Jung
https://doi.org/10.7717/peerj.12707 PubMed 35036172
October 5, 2021
Potential of artificial intelligence to accelerate diagnosis and drug discovery for COVID-19
Indira Mikkili, Abraham Peele Karlapudi, T. C. Venkateswarulu, Vidya Prabhakar Kodali, Deepika Sri Singh Macamdas, Krupanidhi Sreerama
https://doi.org/10.7717/peerj.12073 PubMed 34707924
July 19, 2021
The impact of curcumin derived polyphenols on the structure and flexibility COVID-19 main protease binding pocket: a molecular dynamics simulation study
Aweke Mulu, Mulugeta Gajaa, Haregewoin Bezu Woldekidan, Jerusalem Fekadu W/mariam
https://doi.org/10.7717/peerj.11590 PubMed 34322316
July 15, 2021
Utilization of soil residual phosphorus and internal reuse of phosphorus by crops
Mei Yang, Huimin Yang
https://doi.org/10.7717/peerj.11704 PubMed 34316395
June 24, 2021
Genome-wide analysis, identification, evolution and genomic organization of dehydration responsive element-binding (DREB) gene family in Solanum tuberosum
Nida Mushtaq, Faiza Munir, Alvina Gul, Rabia Amir, Rehan Zafar Paracha
https://doi.org/10.7717/peerj.11647 PubMed 34221730
May 4, 2021
Mining TCGA database for gene expression in ovarian serous cystadenocarcinoma microenvironment
Youzheng Xu, Yixin Xu, Chun Wang, Baoguo Xia, Qingling Mu, Shaohong Luan, Jun Fan
https://doi.org/10.7717/peerj.11375 PubMed 33987033
May 3, 2021
Self-compassion, ego-resiliency, coping with stress and the quality of life of parents of children with autism spectrum disorder
Anna Pyszkowska, Kamila Wrona
https://doi.org/10.7717/peerj.11198 PubMed 33986986
April 23, 2021
Re-positive of SARS-CoV-2 test is common in COVID-19 patients after hospital discharge. Data from high standard post-discharge quarantined patients in Macao SAR, China
Chi Leong Wong, Sao Kuan Lei, Chin Ion Lei, Iek Long Lo, Chong Lam, Iek Hou Leong
https://doi.org/10.7717/peerj.11170 PubMed 33981492
April 23, 2021
A molecular dynamics simulation study of the ACE2 receptor with screened natural inhibitors to identify novel drug candidate against COVID-19
Neha Srivastava, Prekshi Garg, Prachi Srivastava, Prahlad Kishore Seth
https://doi.org/10.7717/peerj.11171 PubMed 33981493
April 20, 2021
Identification and comparison of circular RNAs in preeclampsia
Zepeng Ping, Ling Ai, Huaxiang Shen, Xing Zhang, Huling Jiang, Ye Song
https://doi.org/10.7717/peerj.11299 PubMed 33976984
April 16, 2021
NGScloud2: optimized bioinformatic analysis using Amazon Web Services
Fernando Mora-Márquez, José Luis Vázquez-Poletti, Unai López de Heredia
https://doi.org/10.7717/peerj.11237 PubMed 33959420
April 6, 2021
Proteomic analysis reveals key proteins involved in ethylene-induced adventitious root development in cucumber (Cucumis sativus L.)
Jian Lyu, Yue Wu, Xin Jin, Zhongqi Tang, Weibiao Liao, Mohammed Mujitaba Dawuda, Linli Hu, Jianming Xie, Jihua Yu, Alejandro Calderón-Urrea
https://doi.org/10.7717/peerj.10887 PubMed 33868797
January 22, 2021
Genome-wide identification, evolution, and expression of the SNARE gene family in wheat resistance to powdery mildew
Guanghao Wang, Deyu Long, Fagang Yu, Hong Zhang, Chunhuan Chen, Yajuan Wang, Wanquan Ji
https://doi.org/10.7717/peerj.10788 PubMed 33552743
January 15, 2021
Comparison of the effects of two laser photobiomodulation techniques on bio-physical properties of Zea mays L. seeds
Mohammed Hasan, Marlia M. Hanafiah, Intsar H.H. Alhilfy, Ziad Aeyad Taha
https://doi.org/10.7717/peerj.10614 PubMed 33520446
January 14, 2021
Genome-wide miRNA expression profiling in potato (Solanum tuberosum L.) reveals TOR-dependent post-transcriptional gene regulatory networks in diverse metabolic pathway
Kexuan Deng, Huan Yin, Fangjie Xiong, Li Feng, Pan Dong, Maozhi Ren
https://doi.org/10.7717/peerj.10704 PubMed 33520467
January 8, 2021
DNA profiling and assessment of genetic diversity of relict species Allium altaicum Pall. on the territory of Altai
Oxana Khapilina, Olesya Raiser, Alevtina Danilova, Vladislav Shevtsov, Ainur Turzhanova, Ruslan Kalendar
https://doi.org/10.7717/peerj.10674 PubMed 33510974
January 7, 2021
Synergism between calcium nitrate applications and fungal endophytes to increase sugar concentration in Festuca sinensis under cold stress
Lianyu Zhou, Chunjie Li, James F. White, Richard D. Johnson
https://doi.org/10.7717/peerj.10568 PubMed 35070512
December 21, 2020
Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia
Gunadi, Hendra Wibawa, Marcellus, Mohamad Saifudin Hakim, Edwin Widyanto Daniwijaya, Ludhang Pradipta Rizki, Endah Supriyati, Dwi Aris Agung Nugrahaningsih, Afiahayati, Siswanto, Kristy Iskandar, Nungki Anggorowati, Alvin Santoso Kalim, Dyah Ayu Puspitarani, Kemala Athollah, Eggi Arguni, Titik Nuryastuti, Tri Wibawa
https://doi.org/10.7717/peerj.10575 PubMed 33391880
December 15, 2020
Genome-wide member identification, phylogeny and expression analysis of PEBP gene family in wheat and its progenitors
Lei Dong, Yue Lu, Shubing Liu
https://doi.org/10.7717/peerj.10483 PubMed 33362967
November 6, 2020
De novo transcriptome analysis of Cnidium monnieri (L.) Cuss and detection of genes related to coumarin biosynthesis
Yuanyuan Shi, Shengxiang Zhang, Daiyin Peng, Chunmiao Shan, Liqiang Zhao, Bin Wang, Jiawen Wu
https://doi.org/10.7717/peerj.10157 PubMed 33194397
November 4, 2020
Silicon flow from root to shoot in pepper: a comprehensive in silico analysis reveals a potential linkage between gene expression and hormone signaling that stimulates plant growth and metabolism
Fernando Carlos Gómez-Merino, Libia Iris Trejo-Téllez, Atonaltzin García-Jiménez, Hugo Fernando Escobar-Sepúlveda, Sara Monzerrat Ramírez-Olvera
https://doi.org/10.7717/peerj.10053 PubMed 33194376
November 3, 2020
Projection of premature mortality from noncommunicable diseases for 2025: a model based study from Hunan Province, China, 1990–2016
Qiaohua Xu, Maigeng Zhou, Donghui Jin, Xinying Zeng, Jinlei Qi, Li Yin, Yuan Liu, Lei Yin, Yuelong Huang
https://doi.org/10.7717/peerj.10298 PubMed 33194444
October 16, 2020
Positive selection within the genomes of SARS-CoV-2 and other Coronaviruses independent of impact on protein function
Alejandro Berrio, Valerie Gartner, Gregory A. Wray
https://doi.org/10.7717/peerj.10234 PubMed 33088633
September 17, 2020
Estimating the impact of lock-down, quarantine and sensitization in a COVID-19 outbreak: lessons from the COVID-19 outbreak in China
Obiora C. Collins, Kevin J. Duffy
https://doi.org/10.7717/peerj.9933 PubMed 32995089
July 21, 2020
School health assessment tools: a systematic review of measurement in primary schools
Maryam Kazemitabar, Ali Moghadamzadeh, Mojtaba Habibi, Rezvan Hakimzadeh, Danilo Garcia
https://doi.org/10.7717/peerj.9459 PubMed 32742780
July 17, 2020
Genome-wide identification and expression profiles of ERF subfamily transcription factors in Zea mays
Lidong Hao, Shubing Shi, Haibin Guo, Ming Li, Pan Hu, Yadong Wei, Yanfei Feng
https://doi.org/10.7717/peerj.9551 PubMed 32742811
July 14, 2020
Identification of potential biomarkers and their clinical significance in gastric cancer using bioinformatics analysis methods
Jie Liu, Miao Zhou, Yangyang Ouyang, Laifeng Du, Lingbo Xu, Hongyun Li
https://doi.org/10.7717/peerj.9174 PubMed 33062405
July 10, 2020
Analysis of conserved miRNAs in cynomolgus macaque genome using small RNA sequencing and homology searching
Xia Huang, Shijia Li, Xiaoming Liu, Shuting Huang, Shuang Li, Min Zhuo
https://doi.org/10.7717/peerj.9347 PubMed 32728489
July 3, 2020
Genome-wide analysis of basic helix-loop-helix transcription factors in papaya (Carica papaya L.)
Min Yang, Chenping Zhou, Hu Yang, Ruibin Kuang, Bingxiong Huang, Yuerong Wei
https://doi.org/10.7717/peerj.9319 PubMed 32704439
June 19, 2020
The common personal behavior and preventive measures among 42 uninfected travelers from the Hubei province, China during COVID-19 outbreak: a cross-sectional survey in Macao SAR, China
Chon Fu Lio, Hou Hon Cheong, Chin Ion Lei, Iek Long Lo, Lan Yao, Chong Lam, Iek Hou Leong
https://doi.org/10.7717/peerj.9428 PubMed 32596062
May 27, 2020
Dynamics of Influenza A (H5N1) virus protein sequence diversity
Hadia Syahirah Abd Raman, Swan Tan, Joseph Thomas August, Asif M. Khan
https://doi.org/10.7717/peerj.7954 PubMed 32518710
March 16, 2020
CircParser: a novel streamlined pipeline for circular RNA structure and host gene prediction in non-model organisms
Artem Nedoluzhko, Fedor Sharko, Md. Golam Rbbani, Anton Teslyuk, Ioannis Konstantinidis, Jorge M.O. Fernandes
https://doi.org/10.7717/peerj.8757 PubMed 32211235
March 10, 2020
Optimizing alfalfa productivity and persistence versus greenhouse gases fluxes in a continental arid region
Jiao Ning, Xiong Z. He, Fujiang Hou, Shanning Lou, Xianjiang Chen, Shenghua Chang, Cheng Zhang, Wanhe Zhu
https://doi.org/10.7717/peerj.8738 PubMed 32195058
January 27, 2020
Speeding up training of automated bird recognizers by data reduction of audio features
Allan G. de Oliveira, Thiago M. Ventura, Todor D. Ganchev, Lucas N.S. Silva, Marinêz I. Marques, Karl-L. Schuchmann
https://doi.org/10.7717/peerj.8407 PubMed 32025373
January 14, 2020
Isolation and identification of L-asparaginase-producing endophytic fungi from the Asteraceae family plant species of Iran
Sareh Hatamzadeh, Kamran Rahnama, Saeed Nasrollahnejad, Khalil Berdi Fotouhifar, Khodayar Hemmati, James F. White, Fakhtak Taliei
https://doi.org/10.7717/peerj.8309 PubMed 31976175
January 13, 2020
A novel computational approach to the silencing of Sugarcane Bacilliform Guadeloupe A Virus determines potential host-derived MicroRNAs in sugarcane (Saccharum officinarum L.)
Fakiha Ashraf, Muhammad Aleem Ashraf, Xiaowen Hu, Shuzhen Zhang
https://doi.org/10.7717/peerj.8359 PubMed 31976180
November 29, 2019
Stress-induced changes in the expression of antioxidant system genes for rice (Oryza sativa L.) and bread wheat (Triticum aestivum L.)
Anton Ermakov, Aleksandr Bobrovskikh, Ulyana Zubairova, Dmitrii Konstantinov, Alexey Doroshkov
https://doi.org/10.7717/peerj.7791 PubMed 31803533
November 20, 2019
New sources of Sym2A allele in the pea (Pisum sativum L.) carry the unique variant of candidate LysM-RLK gene LykX
Anton S. Sulima, Vladimir A. Zhukov, Olga A. Kulaeva, Ekaterina N. Vasileva, Alexey Y. Borisov, Igor A. Tikhonovich
https://doi.org/10.7717/peerj.8070 PubMed 31768303
November 15, 2019
Single-molecule real-time sequencing identifies massive full-length cDNAs and alternative-splicing events that facilitate comparative and functional genomics study in the hexaploid crop sweet potato
Na Ding, Huihui Cui, Ying Miao, Jun Tang, Qinghe Cao, Yonghai Luo
https://doi.org/10.7717/peerj.7933 PubMed 31741783
November 7, 2019
Genome-wide analysis of transcription factors related to anthocyanin biosynthesis in carmine radish (Raphanus sativus L.) fleshy roots
Jian Gao, Hua Peng, Fabo Chen, Mao Luo, Wenbo Li
https://doi.org/10.7717/peerj.8041 PubMed 31720127
November 4, 2019
A pilot study—genetic diversity and population structure of snow leopards of Gilgit-Baltistan, Pakistan, using molecular techniques
Samreen Aruge, Hafsa Batool, Fida M. Khan, Fakhar-i-Abbas, Safia Janjua
https://doi.org/10.7717/peerj.7672 PubMed 31720096
November 1, 2019
TransPrise: a novel machine learning approach for eukaryotic promoter prediction
Stepan Pachganov, Khalimat Murtazalieva, Aleksei Zarubin, Dmitry Sokolov, Duane R. Chartier, Tatiana V. Tatarinova
https://doi.org/10.7717/peerj.7990 PubMed 31695967
October 29, 2019
T1000: a reduced gene set prioritized for toxicogenomic studies
Othman Soufan, Jessica Ewald, Charles Viau, Doug Crump, Markus Hecker, Niladri Basu, Jianguo Xia
https://doi.org/10.7717/peerj.7975 PubMed 31681519
October 24, 2019
Identification of research trends concerning application of stent implantation in the treatment of pancreatic diseases by quantitative and biclustering analysis: a bibliometric analysis
Xuan Zhu, Xing Niu, Tao Li, Chang Liu, Lijie Chen, Guang Tan
https://doi.org/10.7717/peerj.7674 PubMed 31660258
October 17, 2019
Single-base-resolution methylome of giant panda’s brain, liver and pancreatic tissue
Jianying Ren, Fujun Shen, Liang Zhang, Jie Sun, Miao Yang, Mingyu Yang, Rong Hou, Bisong Yue, Xiuyue Zhang
https://doi.org/10.7717/peerj.7847 PubMed 31637123
October 15, 2019
ncRNA2MetS: a manually curated database for non-coding RNAs associated with metabolic syndrome
Dengju Yao, Xiaojuan Zhan, Xiaorong Zhan, Chee Keong Kwoh, Yuezhongyi Sun
https://doi.org/10.7717/peerj.7909 PubMed 31637139
October 15, 2019
Borrowing from Peter to pay Paul: managing threatened predators of endangered and declining prey species
Zeke Davidson, Marc Dupuis-Desormeaux, Arjun Dheer, Laura Pratt, Elizabeth Preston, Saibala Gilicho, Mary Mwololo, Geoffrey Chege, Suzanne E. MacDonald, C Patrick Doncaster
https://doi.org/10.7717/peerj.7916 PubMed 31637142
September 16, 2019
Engrailed 1 overexpression as a potential prognostic marker in Lower Grade Glioma
Jin Zhu, Yu-Qi Zhang
https://doi.org/10.7717/peerj.7414 PubMed 31576231
September 11, 2019
Genome-wide identification, characterization and expression pattern analysis of APYRASE family members in response to abiotic and biotic stresses in wheat
Wenbo Liu, Jun Ni, Faheem Afzal Shah, Kaiqin Ye, Hao Hu, Qiaojian Wang, Dongdong Wang, Yuanyuan Yao, Shengwei Huang, Jinyan Hou, Chenghong Liu, Lifang Wu
https://doi.org/10.7717/peerj.7622 PubMed 31565565
August 29, 2019
Effects of shading on the growth and leaf photosynthetic characteristics of three forages in an apple orchard on the Loess Plateau of eastern Gansu, China
Mei Yang, Minguo Liu, Jiaoyun Lu, Huimin Yang
https://doi.org/10.7717/peerj.7594 PubMed 31528505
August 23, 2019
Metabolic alterations in pea leaves during arbuscular mycorrhiza development
Oksana Y. Shtark, Roman K. Puzanskiy, Galina S. Avdeeva, Andrey P. Yurkov, Galina N. Smolikova, Vladislav V. Yemelyanov, Marina S. Kliukova, Alexey L. Shavarda, Anastasiia A. Kirpichnikova, Aleksandr I. Zhernakov, Alexey M. Afonin, Igor A. Tikhonovich, Vladimir A. Zhukov, Maria F. Shishova
https://doi.org/10.7717/peerj.7495 PubMed 31497392
August 16, 2019
Differential expression of AtWAKL10 in response to nitric oxide suggests a putative role in biotic and abiotic stress responses
Phearom Bot, Bong-Gyu Mun, Qari Muhammad Imran, Adil Hussain, Sang-Uk Lee, Gary Loake, Byung-Wook Yun
https://doi.org/10.7717/peerj.7383 PubMed 31440429
July 10, 2019
Structure and ion physiology of Brasenia schreberi glandular trichomes in vivo
Chaodong Yang, Xia Zhang, Fan Zhang, Xiaoe Wang, Qingfeng Wang
https://doi.org/10.7717/peerj.7288 PubMed 31637113
July 9, 2019
Identification of conserved genes involved in nitrogen metabolic activities in wheat
Lei Li, Hao Gong, Zhengxi Sun, Tao Li
https://doi.org/10.7717/peerj.7281 PubMed 31328042
July 8, 2019
Transcription factors involved in abiotic stress responses in Maize (Zea mays L.) and their roles in enhanced productivity in the post genomics era
Roy Njoroge Kimotho, Elamin Hafiz Baillo, Zhengbin Zhang
https://doi.org/10.7717/peerj.7211 PubMed 31328030
June 27, 2019
Identification of microRNA-21 target genes associated with hair follicle development in sheep
Bo Zhai, Lichun Zhang, Chunxin Wang, Zhuo Zhao, Mingxin Zhang, Xu Li
https://doi.org/10.7717/peerj.7167 PubMed 31293827
June 21, 2019
Description and classification of bivalve mollusks hemocytes: a computational approach
Yuriy A. Karetin, Aleksandra A. Kalitnik, Alina E. Safonova, Eduardas Cicinskas
https://doi.org/10.7717/peerj.7056 PubMed 31275741
June 12, 2019
Genetic diversity of gliadin-coding alleles in bread wheat (Triticum aestivum L.) from Northern Kazakhstan
Maral Utebayev, Svetlana Dashkevich, Nina Bome, Kulpash Bulatova, Yuri Shavrukov
https://doi.org/10.7717/peerj.7082 PubMed 31223532
June 10, 2019
Stoichiometric ratios support plant adaption to grazing moderated by soil nutrients and root enzymes
Wenjing Ma, Jin Li, Saheed Olaide Jimoh, Yujuan Zhang, Fenghui Guo, Yong Ding, Xiliang Li, Xiangyang Hou
https://doi.org/10.7717/peerj.7047 PubMed 31218124
May 22, 2019
FunPred 3.0: improved protein function prediction using protein interaction network
Sovan Saha, Piyali Chatterjee, Subhadip Basu, Mita Nasipuri, Dariusz Plewczynski
https://doi.org/10.7717/peerj.6830 PubMed 31198622
May 15, 2019
Order, please! Uncertainty in the ordinal-level classification of Chlorophyceae
Karolina Fučíková, Paul O. Lewis, Suman Neupane, Kenneth G. Karol, Louise A. Lewis
https://doi.org/10.7717/peerj.6899 PubMed 31143537
May 8, 2019
Circular RNAs as potential biomarkers and therapeutics for cardiovascular disease
Weitie Wang, Yong Wang, Hulin Piao, Bo Li, Maoxun Huang, Zhicheng Zhu, Dan Li, Tiance Wang, Rihao Xu, Kexiang Liu
https://doi.org/10.7717/peerj.6831 PubMed 31119072
April 22, 2019
MicroRNA profiling of mouse liver in response to DENV-1 infection by deep sequencing
Lian Yih Pong, Sinikka Parkkinen, Amreeta Dhanoa, Han Ming Gan, Indeevari Abisheka Chiharu Wickremesinghe, Sharifah Syed Hassan
https://doi.org/10.7717/peerj.6697 PubMed 31065454
April 18, 2019
Bioeffects of Prunus spinosa L. fruit ethanol extract on reproduction and phenotypic plasticity of Trichoplax adhaerens Schulze, 1883 (Placozoa)
Maria Cristina Albertini, Daniele Fraternale, Federica Semprucci, Silvio Cecchini, Mariastella Colomba, Marco B.L. Rocchi, Davide Sisti, Barbara Di Giacomo, Michele Mari, Luigia Sabatini, Lucia Cesaroni, Maria Balsamo, Loretta Guidi
https://doi.org/10.7717/peerj.6789 PubMed 31024778
April 2, 2019
Mapping-by-sequencing using NGS-based 3′-MACE-Seq reveals a new mutant allele of the essential nodulation gene Sym33 (IPD3) in pea (Pisum sativum L.)
Aleksandr I. Zhernakov, Oksana Y. Shtark, Olga A. Kulaeva, Jaroslava V. Fedorina, Alexey M. Afonin, Anna B. Kitaeva, Viktor E. Tsyganov, Fabian Afonso-Grunz, Klaus Hoffmeier, Björn Rotter, Peter Winter, Igor A. Tikhonovich, Vladimir A. Zhukov
https://doi.org/10.7717/peerj.6662 PubMed 30972251
March 5, 2019
Transcriptome analysis of osmotic-responsive genes in ABA-dependent and -independent pathways in wheat (Triticum aestivum L.) roots
Chunxi Li, Wenli Zhang, Meng Yuan, Lina Jiang, Bo Sun, Daijing Zhang, Yun Shao, Anqi Liu, Xueqing Liu, Jianhui Ma
https://doi.org/10.7717/peerj.6519 PubMed 30863676
March 4, 2019
Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes
Ksenia M. Klimina, Artem S. Kasianov, Elena U. Poluektova, Kirill V. Emelyanov, Viktoriya N. Voroshilova, Natalia V. Zakharevich, Anna V. Kudryavtseva, Vsevolod J. Makeev, Valery N. Danilenko
https://doi.org/10.7717/peerj.6554 PubMed 30863681
February 25, 2019
Tumor mutational profile of triple negative breast cancer patients in Thailand revealed distinctive genetic alteration in chromatin remodeling gene
Suvimol Niyomnaitham, Napa Parinyanitikul, Ekkapong Roothumnong, Worapoj Jinda, Norasate Samarnthai, Taywin Atikankul, Bhoom Suktitipat, Wanna Thongnoppakhun, Chanin Limwongse, Manop Pithukpakorn
https://doi.org/10.7717/peerj.6501 PubMed 30828495
February 6, 2019
The identification of gene signature and critical pathway associated with childhood-onset type 2 diabetes
Keren Jia, Yingcheng Wu, Jingyi Ju, Liyang Wang, Lili Shi, Huiqun Wu, Kui Jiang, Jiancheng Dong
https://doi.org/10.7717/peerj.6343 PubMed 30755828
January 31, 2019
Validation of reference genes for gene expression studies in post-harvest leaves of tea plant (Camellia sinensis)
Zi-wei Zhou, Hui-li Deng, Qing-yang Wu, Bin-bin Liu, Chuan Yue, Ting-ting Deng, Zhong-xiong Lai, Yun Sun
https://doi.org/10.7717/peerj.6385 PubMed 30723635
January 15, 2019
Duplicated flavonoid 3’-hydroxylase and flavonoid 3’, 5’-hydroxylase genes in barley genome
Alexander V. Vikhorev, Ksenia V. Strygina, Elena K. Khlestkina
https://doi.org/10.7717/peerj.6266 PubMed 30671306
January 8, 2019
Defensin-like peptides in wheat analyzed by whole-transcriptome sequencing: a focus on structural diversity and role in induced resistance
Tatyana I. Odintsova, Marina P. Slezina, Ekaterina A. Istomina, Tatyana V. Korostyleva, Artem S. Kasianov, Alexey S. Kovtun, Vsevolod J. Makeev, Larisa A. Shcherbakova, Alexander M. Kudryavtsev
https://doi.org/10.7717/peerj.6125 PubMed 30643692
November 20, 2018
Specific and reliable detection of Myosin 1C isoform A by RTqPCR in prostate cancer cells
Aleena A. Saidova, Daria M. Potashnikova, Anna V. Tvorogova, Ivan V. Maly, Wilma A. Hofmann, Ivan A. Vorobjev
https://doi.org/10.7717/peerj.5970 PubMed 30498638
November 7, 2018
PromoterPredict: sequence-based modelling of Escherichia coli σ70 promoter strength yields logarithmic dependence between promoter strength and sequence
Ramit Bharanikumar, Keshav Aditya R. Premkumar, Ashok Palaniappan
https://doi.org/10.7717/peerj.5862 PubMed 30425888
October 30, 2018
Comparative functional analysis of proteins containing low-complexity predicted amyloid regions
Bandana Kumari, Ravindra Kumar, Vipin Chauhan, Manish Kumar
https://doi.org/10.7717/peerj.5823 PubMed 30397544
October 4, 2018
An automated, high-throughput method for standardizing image color profiles to improve image-based plant phenotyping
Jeffrey C. Berry, Noah Fahlgren, Alexandria A. Pokorny, Rebecca S. Bart, Kira M. Veley
https://doi.org/10.7717/peerj.5727 PubMed 30310752
September 19, 2018
Foraging dynamics are associated with social status and context in mouse social hierarchies
Won Lee, Eilene Yang, James P. Curley
https://doi.org/10.7717/peerj.5617 PubMed 30258716
July 17, 2018
Meta-analysis of transcriptomic responses to biotic and abiotic stress in tomato
Elham Ashrafi-Dehkordi, Abbas Alemzadeh, Nobukazu Tanaka, Hooman Razi
https://doi.org/10.7717/peerj.4631 PubMed 30038850
July 6, 2018
Genetic analysis of water loss of excised leaves associated with drought tolerance in wheat
Ilona Mieczysława Czyczyło-Mysza, Izabela Marcińska, Edyta Skrzypek, Jan Bocianowski, Kinga Dziurka, Dragana Rančić, Radenko Radošević, Sofija Pekić-Quarrie, Dejan Dodig, Stephen Alexander Quarrie
https://doi.org/10.7717/peerj.5063 PubMed 30002956
June 27, 2018
Two sugar beet chitinase genes, BvSP2 and BvSE2, analysed with SNP Amplifluor-like markers, are highly expressed after Fusarium root rot inoculations and field susceptibility trial
Raushan Yerzhebayeva, Alfiya Abekova, Kerimkul Konysbekov, Sholpan Bastaubayeva, Aynur Kabdrakhmanova, Aiman Absattarova, Yuri Shavrukov
https://doi.org/10.7717/peerj.5127 PubMed 29967753
May 16, 2018
Integrated bioinformatic changes and analysis of retina with time in diabetic rats
Zekai Cui, Qiaolang Zeng, Yonglong Guo, Shiwei Liu, Jiansu Chen
https://doi.org/10.7717/peerj.4762 PubMed 29785346
May 14, 2018
Modulation of transcriptional activity in brain lower grade glioma by alternative splicing
Jin Li, Yang Wang, Xianglian Meng, Hong Liang
https://doi.org/10.7717/peerj.4686 PubMed 29780667
May 11, 2018
A strategy to find novel candidate anti-Alzheimer’s disease drugs by constructing interaction networks between drug targets and natural compounds in medical plants
Bi-Wen Chen, Wen-Xing Li, Guang-Hui Wang, Gong-Hua Li, Jia-Qian Liu, Jun-Juan Zheng, Qian Wang, Hui-Juan Li, Shao-Xing Dai, Jing-Fei Huang
https://doi.org/10.7717/peerj.4756 PubMed 29770277
April 18, 2018
Flavonoid biosynthesis controls fiber color in naturally colored cotton
Hai-Feng Liu, Cheng Luo, Wu Song, Haitao Shen, Guoliang Li, Zhi-Gang He, Wen-Gang Chen, Yan-Yan Cao, Fang Huang, Shou-Wu Tang, Ping Hong, En-Feng Zhao, Jianbo Zhu, Dajun He, Shaoming Wang, Guang-Ying Huo, Hailiang Liu
https://doi.org/10.7717/peerj.4537 PubMed 29682406
January 12, 2018
Integrated genomic analyses of lung squamous cell carcinoma for identification of a possible competitive endogenous RNA network by means of TCGA datasets
Pengbo Ning, Zhongxing Wu, Aoxue Hu, Xuepeng Li, Jun He, Xiaocheng Gong, Yuqiong Xia, Yukui Shang, Huijie Bian
https://doi.org/10.7717/peerj.4254 PubMed 29340250
November 21, 2017
Development of medical informatics in China over the past 30 years from a conference perspective and a Sino-American comparison
Jun Liang, Kunyan Wei, Qun Meng, Zhenying Chen, Jiajie Zhang, Jianbo Lei
https://doi.org/10.7717/peerj.4082 PubMed 29177118
September 4, 2017
Minimum infusion rate and adrenocortical function after continuous infusion of the novel etomidate analog ET-26-HCl in rats
Junli Jiang, Bin Wang, Zhaoqiong Zhu, Jun Yang, Jin Liu, Wensheng Zhang
https://doi.org/10.7717/peerj.3693 PubMed 28890850
August 10, 2017
Ecological interactions and the Netflix problem
Philippe Desjardins-Proulx, Idaline Laigle, Timothée Poisot, Dominique Gravel
https://doi.org/10.7717/peerj.3644 PubMed 28828250

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November 5, 2019
Screening of reference genes for expression analysis in the study of soldier caste differentiation of Formosan subterranean termite Coptotermes formosanus Shiraki
He Du, Wenjing Wu, Xueyi Huang, Zhiqiang Li
https://doi.org/10.7717/peerj.7981 PubMed 31720111