Interspecific variation in the limb long bones among modern rhinoceroses—extent and drivers

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Zoological Science

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Introduction

Materials and Methods

Sample

3D models

Anatomical terminology

Geometric morphometrics

Landmark digitization

Repeatability tests

Generalized Procrustes Analyses

Allometry effect

Results

Shape analysis

Humerus

Radius

Ulna

Femur

Tibia

Fibula

Interspecific morphological variation

Correlation with the centroid size

Allometry

Discussion

Identification of morphotypes and phylogenetic influence

Role of ecology

Shape variation, evolutionary allometry and functional implications

Forelimb bones

Hind limb bones

Differences between body mass and body size

Limb bone shape and graviportality

Conclusion

Supplemental Information

Designation and location of anatomical landmarks placed on each bone.

DOI: 10.7717/peerj.7647/supp-1

Table S2.

List of the studied specimens with accession numbers, skeletal composition, sex, age class, condition and 3D acquisition details.

DOI: 10.7717/peerj.7647/supp-2

PCA plots of the results of repeatability tests.

Each landmark configuration was digitized ten times on three specimens of Ceratotherium simum chosen to display the fewer morphological difference as possible. Each color corresponds to a specimen. For each bone, the inter-specimen variation is lower than the intra-specimen error due to differences between landmark digitization. We concluded to the relevance of our anatomical landmark configuration to describe shape variation within our sample.

DOI: 10.7717/peerj.7647/supp-3

Complete visualizations of theoretical shapes associated with the minimal and maximal values for the two first principal components for each bone.

DOI: 10.7717/peerj.7647/supp-4

Neighbor Joining trees computed on all PC scores obtained from the PCAs performed on shape data.

A: Humerus; B: Radius; C: Ulna; D: Femur; E: Tibia; F: Fibula. Specimen codes are given following the Table 2.

DOI: 10.7717/peerj.7647/supp-5

Complete visualizations of mean shapes of each bones for the five considered species.

DOI: 10.7717/peerj.7647/supp-6

Complete visualizations of theoretical shapes associated with minimal and maximal centroid sizes for the six bones.

DOI: 10.7717/peerj.7647/supp-7

Complete visualizations of theoretical shapes associated with minimal and maximal mean mass for the six bones.

DOI: 10.7717/peerj.7647/supp-8

Raw data (.pts files) of the anatomical, curve and surface landmarks.

DOI: 10.7717/peerj.7647/supp-9

R code used for the analysis.

As the same analysis process was performed on each bone, the code is given for one bone only (humerus). Landmark declaration is also given for the five other bones.

DOI: 10.7717/peerj.7647/supp-10

Additional Information and Declarations

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Christophe Mallet conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Raphaël Cornette conceived and designed the experiments, performed the experiments, analyzed the data, authored or reviewed drafts of the paper, approved the final draft.

Guillaume Billet conceived and designed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Alexandra Houssaye conceived and designed the experiments, authored or reviewed drafts of the paper, approved the final draft.

Data Availability

The following information was supplied regarding data availability:

The raw data (available in the Supplemental Files) are the spatial coordinates of all the landmarks placed on each specimen. Anatomical and curve landmarks were placed on each specimen, whereas sliding surface semi-landmarks were placed only on the template (suffix “LM_surface” in the file name) and then projected and slided on each specimen.

The R code (available in the Supplemental Files) describes the template creation, sliding process, Procrustes analysis and data analysis for one bone (humerus). Landmark definition is provided for all the other five bones.

Table S2 provides the details regarding the institution, the accession numbers, the available bones, the sex, the age and the condition, as well as the method of 3D acquisition of the data. All the studied specimens are stored in their respective institution.

Funding

This work was funded by the European Research Council and is part of the GRAVIBONE project (ERC-2016-STG-715300). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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