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Phytobiomes are compositionally nested from the ground up

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RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
171 days ago
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
171 days ago
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
171 days ago
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
RT @fungaloha: My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that t…
My first preprint! Our "microbiome bootcamp" class finds strong patterns of within-plant microbe community nestedness that tracks height and longevity of plant part sampled. https://t.co/AyGAdAfKtW
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Supplemental Information

Box and whisker plots of dispersion of Jaccard beta diversity values within plant parts and soil samples

No dispersion means significantly differed in pairwise comparisons.

DOI: 10.7287/peerj.preprints.27393v1/supp-1

Significant indicator species for plant parts

DOI: 10.7287/peerj.preprints.27393v1/supp-3

Mantel tests measure the correlation between geographic distance and microbial community dissimilarity for Scaevola taccada surface microbes, including all Kailua individuals

DOI: 10.7287/peerj.preprints.27393v1/supp-4

Additional Information

Competing Interests

Anthony S. Amend is an Academic Editor for PeerJ.

Author Contributions

Anthony S Amend conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Gerald M Cobian conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Aki J Laruson performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Kristina Remple performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Sarah J Tucker performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Kirsten E Poff performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Carmen Antaky performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Andre Boraks performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Casey A Jones performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Donna Kuehu performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Becca R Lensing performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Mersedeh Pejhanmehr performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Daniel T Richardson performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Paul P Riley performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

DNA Deposition

The following information was supplied regarding the deposition of DNA sequences:

Sequence data is deposited in the SRA as PRJNA385181.

https://www.ncbi.nlm.nih.gov/bioproject/PRJNA385181

Data Deposition

The following information was supplied regarding data availability:

Because this was a class project, code was generated by 12 students independently such that object names are not consistent. Collating these into a single readable format would be a massive undertaking. I regret not having organized this better at the onset and consider it an important lesson learned!

Funding

This work was supported by NSF grant #1255972 to Amend and NSF fellowship #1329626 to Cobian. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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