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Supplemental Information

Supplimentary table

Contains:

Details of datasets used for the study

Accuracy comparison of different methods per datasets

Runtime for each dataset

Statistical details (STDDEV, MEAN, Variance, Q1, Q2(median), Q3 ) of the difference b/n real and predicted abundance

DOI: 10.7287/peerj.preprints.2378v1/supp-1

Figure S1: Precision - Recall Curves: SLIMM vs Existing Methods

Precision - Recall Curves: SLIMM vs Existing Methods across 8 different datasets

DOI: 10.7287/peerj.preprints.2378v1/supp-2

Figure S2: Precision - Recall Curves: Different SLIMM variants

Precision - Recall Curves of Different SLIMM variants across 8 different datasets

DOI: 10.7287/peerj.preprints.2378v1/supp-3

Figure S3. Violin Plots of the difference between real and predicted abundances: SLIMM vs Existing Methods

Violin Plots of the difference between real and predicted abundances: SLIMM vs Existing Methods across 8 different datasets

DOI: 10.7287/peerj.preprints.2378v1/supp-4

Figure S4: Violin Plots of the difference between real and predicted abundances: Different SLIMM variants

Violin Plots of the difference between real and predicted abundances: Different SLIMM variants across 8 different datasets

DOI: 10.7287/peerj.preprints.2378v1/supp-5

Figure S5: predicted vs real abundances: SLIMM vs Existing Methods

Predicted vs real abundances: SLIMM vs Existing Methods across 8 different datasets

DOI: 10.7287/peerj.preprints.2378v1/supp-6

Figure S6: predicted vs real abundances: Different SLIMM variants

Predicted vs real abundances: Different SLIMM variants across 8 different datasets

DOI: 10.7287/peerj.preprints.2378v1/supp-7

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Temesgen Hailemariam Dadi conceived and designed the experiments, performed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Bernhard Renard wrote the paper, reviewed drafts of the paper.

Lothar H. Wieler wrote the paper, reviewed drafts of the paper.

Torsten Semmler wrote the paper, reviewed drafts of the paper.

Knut Reinert wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

GitHub

URL:

https://github.com/temehi/slimm

Funding

This work is supported by the International Max Planck Research School for Computational Biology and Scientific Computing and by the InfectControl 2020 Project (TFP-TV4). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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