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Supplemental Information

Bayesian coalescence tree for hemagglutinin

Bayesian coalescence gene tree for all of the H5N8 hemagglutinin segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years.

DOI: 10.7287/peerj.preprints.822v1/supp-1

Bayesian coalescence tree of neuraminidase

Bayesian coalescence gene tree for all of the H5N8 neuraminidase segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years.

DOI: 10.7287/peerj.preprints.822v1/supp-2

Bayesian coalescent tree of the matrix protein segment

Bayesian coalescence gene tree for all of the H5N8 matrix protein segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years.

DOI: 10.7287/peerj.preprints.822v1/supp-3

Bayesian coalescent tree of polymerase protein segment PB1

Bayesian coalescence gene tree for all of the H5N8 polymerase subunit (PB1) segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years.

DOI: 10.7287/peerj.preprints.822v1/supp-4

Bayesian coalescent tree for the polymerase protein segment PB2

Bayesian coalescence gene tree for all of the H5N8 polymerase subunit (PB2) segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years.

DOI: 10.7287/peerj.preprints.822v1/supp-5

Bayesian coalescent tree for the polymerase PA protein segment

Bayesian coalescence gene tree for all of the H5N8 polymerase subunit (PA) segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years.

DOI: 10.7287/peerj.preprints.822v1/supp-6

Bayesian coalescent tree for the nucleoprotein segment

Bayesian coalescence gene tree for all of the H5N8 nucleoprotein subunit (NP) segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years

DOI: 10.7287/peerj.preprints.822v1/supp-7

Bayesian coalescent tree for the non-structural protein segment

Bayesian coalescence gene tree for all of the H5N8 non-structural protein subunit (NS) segment sequences. The blue bars on the nodes represent the 95% highest posterior densities of the branch heights (this is the time for divergence in months). The European and Japanese clade is highlighted in red. The x-axis represents the date in years.

DOI: 10.7287/peerj.preprints.822v1/supp-8

Additional Information

Competing Interests

The authors declare they have no competing interests.

Author Contributions

Andrew Dalby conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Munir Iqbal wrote the paper, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding the deposition of related data:

Google Maps, INEGI <https://www.google.com/maps/d/u/0/viewer?mid=zcvUWKLLjKsE.kvYJ1NxAer8k>

Funding

The authors declare there was no funding for this work.


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