Pipeline input (Input genome assembly accessions, Pipeline configuration, Specieslist)
Bacterial strains (Target strains, Non-target strains, Cultivation conditions)
qPCR raw data
Raw data of qPCR experiments. Data export from Rotor-Gene 6000 Software 1.7 with dynamic tube normalization and a threshold of 0.05 for quantification cycle (Cq) value calculation, the five first cycles were ignored for the determination of the Cq values. The peak calling threshold for the melt curve analysis was set to -2 dF/dT and a temperature threshold was set 2 °C lower than the positive control peak.