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Transcriptome resequencing analysis of the responses of Ty-5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars

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Transcriptome resequencing analysis of the responses of Ty-5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars https://t.co/s0uzn55w4e
Transcriptome resequencing analysis of the responses of Ty-5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars https://t.co/M9DPKOBscI Tomato yellow leaf curl virus (TYLCV) is one of the most devastating viruses of cultivated tomato in both…
288 days ago
Transcriptome resequencing analysis of the responses of Ty-5-Mediated resistance to TYLCV via in resistant vs. susceptible tomato cultivars https://t.co/lgpfTar91p
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Supplemental Information

Gene Ontology and enrichment of DEGs in different group comparisons, including RT-VS-ST, R-VS-RT, R-VS-S and S-VS-ST

DOI: 10.7287/peerj.preprints.26578v1/supp-1

GO enrichment of DEGs for the biological process category

DOI: 10.7287/peerj.preprints.26578v1/supp-2

GO enrichment of DEGs for cellular component category in RT-VS-ST, R-VS-RT and S-VS-ST

DOI: 10.7287/peerj.preprints.26578v1/supp-3

GO enrichment of DEGs for molecular function category in RT-VS-ST, R-VS-RT and S-VS-ST

DOI: 10.7287/peerj.preprints.26578v1/supp-4

Plant hormone signal transduction

DOI: 10.7287/peerj.preprints.26578v1/supp-5

Carbon fixation in photosynthetic organisms

DOI: 10.7287/peerj.preprints.26578v1/supp-7

Quantitative analysis of raw RNA-Seq data

DOI: 10.7287/peerj.preprints.26578v1/supp-10

DEGs identified in the S-VS-ST comparison by DEseq2 methods

DOI: 10.7287/peerj.preprints.26578v1/supp-11

DEGs identified in the RT-VS-ST comparison by DEseq2 methods

DOI: 10.7287/peerj.preprints.26578v1/supp-12

DEGs identified in the R-VS-RT comparison by DEseq2 methods

DOI: 10.7287/peerj.preprints.26578v1/supp-13

DEGs identified in the R-VS-S comparison by DEseq2 methods

DOI: 10.7287/peerj.preprints.26578v1/supp-14

Expression values of 12 genes in the S, R, RT and ST groups obtained by RNA-Seq and RT-qPCR analysis

DOI: 10.7287/peerj.preprints.26578v1/supp-15

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Qingqi Chen conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, approved the final draft.

Xiangyang Xu authored or reviewed drafts of the paper.

Jingbin Jiang conceived and designed the experiments, contributed reagents/materials/analysis tools, authored or reviewed drafts of the paper.

Jingfu Li conceived and designed the experiments, analyzed the data, authored or reviewed drafts of the paper.

Field Study Permissions

The following information was supplied relating to field study approvals (i.e., approving body and any reference numbers):

Field experiments were approved by Northeast Agricultural University.

Data Deposition

The following information was supplied regarding data availability:

The raw data are provided as Supplemental Files.

Funding

This research was supported by the National 13th Five Year Plan Key Research Project (2016YFD0101703). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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