PeerJ Preprints - Table of Contents

September 19, 2017 - Version: 1

Poster abstracts of the 25^th German Conference on Bioinformatics

Kay Nieselt, Nico Pfeifer, Andrei Lupas, Oliver Kohlbacher

https://doi.org/10.7287/peerj.preprints.3268v1

September 29, 2017 - Version: 1

R Python, and Ruby clients for GBIF species occurrence data

Scott A Chamberlain, Carl Boettiger

https://doi.org/10.7287/peerj.preprints.3304v1

September 5, 2017 - Version: 1

PlantCV v2.0: Image analysis software for high-throughput plant phenotyping

Malia A Gehan, Noah Fahlgren, Arash Abbasi, Jeffrey C Berry, Steven T Callen, Leonardo Chavez, Andrew N Doust, Max J Feldman, Kerrigan B Gilbert, John G Hodge, J Steen Hoyer, Andy Lin, Suxing Liu, César Lizárraga, Argelia Lorence, Michael Miller, Eric Platon, Monica Tessman, Tony Sax

https://doi.org/10.7287/peerj.preprints.3225v1

September 18, 2017 - Version: 1

A Dynamic Bayesian Network model for simulation of disease progression in Amyotrophic Lateral Sclerosis patients

Alessandro Zandonà, Matilde Francescon, Maya Bronfeld, Andrea Calvo, Adriano Chiò, Barbara Di Camillo

https://doi.org/10.7287/peerj.preprints.3262v1

September 6, 2017 - Version: 1

From trash to treasure: detecting unexpected contamination in unmapped NGS data

llaria Granata, Mara Sangiovanni, Amarinder Singh Thind, Mario Rosario Guarracino

https://doi.org/10.7287/peerj.preprints.3230v1

September 6, 2017 - Version: 1

Predicting comorbidities of epilepsy patients using big data from Electronic Health Records combined with biomedical knowledge

Thomas Gerlach, Chao Lu, Holger Fröhlich

https://doi.org/10.7287/peerj.preprints.3228v1

September 6, 2017 - Version: 1

Structure, dynamics and predicted functional ecology of the gut microbiota of the blue (Haliotis fulgens) and yellow (H. corrugata) abalone from Baja California Sur, Mexico

Francesco Cicala, José Alejandro Cisterna-Céliz, James Douglas Moore, Axayácatl Rocha-Olivares

https://doi.org/10.7287/peerj.preprints.3233v1

September 13, 2017 - Version: 1

Enumerating common molecular substructures

Martin S Engler, Mohammed El-Kebir, Jelmer Mulder, Alan E Mark, Daan P Geerke, Gunnar W Klau

https://doi.org/10.7287/peerj.preprints.3250v1

September 17, 2017 - Version: 1

Identification of mutational signatures active in individual tumors

Sandra Krüger, Rosario M Piro

https://doi.org/10.7287/peerj.preprints.3257v1

September 11, 2017 - Version: 1

Epistasis analysis reveals associations between gene variants and bipolar disorder

Carlo Maj, Elena Milanesi, Massimo Gennarelli, Luciano Milanesi, ivan Merelli

https://doi.org/10.7287/peerj.preprints.3242v1

September 26, 2017 - Version: 1

Ecosystem distribution profiling of bacteria from a unique hypersaline sediment (sabkha) reveals ecological specialization among communities in the environment

Abdul-Matiin Wan, Antonio M. Martin-Platero, Areej Alsheikh-Hussain, Syafiq Kamarul Azman, Lina F. Yousef, Andreas Henschel

https://doi.org/10.7287/peerj.preprints.3286v1

September 13, 2017 - Version: 1

Hortense: Horizontal gene transfer detection directly from proteomic MS/MS data

Kathrin Trappe, Ben Wulf, Joerg Doellinger, Sven Halbedel, Thilo Muth, Bernhard Y Renard

https://doi.org/10.7287/peerj.preprints.3248v1

September 19, 2017 - Version: 1

On the efficiency of the Genetic Code after frameshift mutations

Regine Geyer, Amir Madany Mamlouk

https://doi.org/10.7287/peerj.preprints.3270v1

September 6, 2017 - Version: 1

MTopGO: a tool for module identification in PPI Networks

Danila Vella, Simone Marini, Francesca Vitali, Riccardo Bellazzi

https://doi.org/10.7287/peerj.preprints.3229v1

September 5, 2017 - Version: 1

DeepBlueR: Large-scale epigenomic analysis in R

Markus List, Felipe Albrecht, Christoph Bock, Thomas Lengauer

https://doi.org/10.7287/peerj.preprints.3224v1

September 5, 2017 - Version: 1

Genome rearrangements and phylogeny reconstruction in Yersinia pestis

Olga O Bochkareva, Natalia O Dranenko, Elena S Ocheredko, German M Kanevsky, Yaroslav N Lozinsky, Vera A Khalaycheva, Irena I Artamonova, Mikhail S Gelfand

https://doi.org/10.7287/peerj.preprints.3223v1

September 12, 2017 - Version: 1

GenHap: A novel computational method based on genetic algorithms for haplotype assembly

Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S Nobile, Ivan Merelli, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri, Pietro Liò

https://doi.org/10.7287/peerj.preprints.3246v1

September 12, 2017 - Version: 1

In-silico prediction and modeling of ApxA exotoxins of Actinobacillus pleuropneumoniae: ApxIA, -IIA, -IIIA and -IVA

Myung Whan Oh, Han Sang Yoo

https://doi.org/10.7287/peerj.preprints.3244v1

September 26, 2017 - Version: 2

Melanoma expression analysis with Big Data technologies

Alicia Fernandez-Rovira, Rocio Lavado-Valenzuela, Miguel Ángel Berciano Guerrero, Ismael Navas-Delgado, José F Aldana-Montes