Dissection of leucine-rich repeat receptor-like protein kinases: insight into resistance to Fusarium wilt in tung tree

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Bioinformatics and Genomics

Main article text

 

Introduction

Materials and Methods

Database search

Phylogenetic analysis

Gene structure and collinear analysis

Transcriptome analysis

Results and Discussion

Identified of VmLRR-RLKs in V. montana

Gene structure analysis of VmLRR-RLKs in V. montana

Phylogenetic analysis of VmLRR-RLKs in V. montana

The chromosome localization and gene duplication analysis of VmLRR-RLKs in V. montana

Expression pattern analysis of LRR-RLK family genes

Conclusions

Supplemental Information

List of LRR-RLK genes identified in V. montana.

DOI: 10.7717/peerj.14416/supp-1

Additional Information and Declarations

Competing Interests

Yunpeng Cao is an Academic Editor for PeerJ.

Author Contributions

Yunpeng Cao conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Tingting Fan conceived and designed the experiments, prepared figures and/or tables, and approved the final draft.

Bo Zhang conceived and designed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft.

Yanli Li conceived and designed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Data Availability

The following information was supplied regarding data availability:

The raw measurements are available in Table 1 and Table S1.

The RNA-seq data are available at NCBI: PRJNA483508, PRJNA445068, and PRJNA318350.

The genome of tung tree are available at the Genome Sequence Archive at the BIG Data Center, Beijing Institute of Genomics (BIG), Chinese Academy of Sciences: PRJCA000669 and PRJCA001524 that are publicly accessible at http://bigd.big.ac.cn/gsa. These data are also available at NCBI: PRJNA503685 and PRJNA445350.

Funding

This work was supported by the National Natural Science Foundation of China (Grant No. 32201602), the Natural Science Fund Youth Project of Hunan Province (Grant No. 2021JJ41067), and the Outstanding Youth of the Education Department of Hunan Province (Grant No. 20B624). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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