Habitat selection of black grouse in an isolated population in northern Germany—the importance of mixing dry and wet habitats

View article
Ecology

Main article text

 

Introduction

Materials & Methods

Study area

Black grouse data

Environmental data

Data processing

Data analysis of habitat selection

Results

Habitat selection

Extrapolation of habitat suitability

Discussion

Habitat selection

Extrapolation of habitat suitability

Management and research implications

Supplemental Information

Classification of mapped biotope types and linkage to corresponding model variables (grouped habitat types) and Habitats Directive Codes

DOI: 10.7717/peerj.14161/supp-1

Code: Processing of spatial data containing rasterization of background data and point extraction for presence and background points

Code description

- Defining the extent of the study area (area of interest).

- Processing of spatial data by rasterizing biotope and vegetation mapping data, applying moving window rasterization, processing distance rasters and generating raster-stacks.

- Processing of presence data, i.e., GPS location data of 7 black grouse. Defining buffered extent for random background points and creating random points.

- Binding of presence and background data, performing point extraction on raster-stack and exporting data table (Table S1).

DOI: 10.7717/peerj.14161/supp-2

Code: Pre-checking for correlated variables and stepwise building of habitat suitability models

Code description

- Correlation analysis of biotope, distance and diversity variables.

- Model building and model selection. (1) Univariate GLMM, (2) Multivariate GLMM, (3) Full additive GLMM, (4) Multivariate GLMM with interactions.

- Visualization and export of final models’ effect plots.

DOI: 10.7717/peerj.14161/supp-3

Code: Application of the final model’s prediction to the entire area of the nature reserve Lüneburg Heath

Code description: Loading raster data (see code-file raster_processing) and the final model (Mi4c). Applying logit-transformation on model equation and performing projection/prediction with raster-stack. Calculating area of habitat suitability for 25% intervals of p-values.

DOI: 10.7717/peerj.14161/supp-4

Dataset for model building

Dataset containing all variables used for model building, including presence and background data, animal ID and environmental variables (availability, distance and diversity). For more information see Table S2.

DOI: 10.7717/peerj.14161/supp-5

Abbreviations list

DOI: 10.7717/peerj.14161/supp-6

Additional Information and Declarations

Competing Interests

The authors declare there are no competing interests.

Author Contributions

Daniel Tost conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Tobias Ludwig conceived and designed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Egbert Strauss conceived and designed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Klaus Jung conceived and designed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Ursula Siebert conceived and designed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Animal Ethics

The following information was supplied relating to ethical approvals (i.e., approving body and any reference numbers):

All stages of the animal experiment were conducted under a permit from the Lower Saxony Institute for Consumer Protection and Food Safety (LAVES, Dept. 33 Animal Welfare, permit number: 33.9-42502-04-11/0364).

Field Study Permissions

The following information was supplied relating to field study approvals (i.e., approving body and any reference numbers):

Field experiments were approved by the lower nature conservation authorites of the district Soltau-Fallingbostel (permit number: 09.509 N 24 - Lü 2 - 4) and district Harburg (permit number: 71 21/1.2.1-0.0 - 2011-0081 -Kr).

Data Availability

The following information was supplied regarding data availability:

The data and code are available in the Supplementary Files.

The environmental raw data (vegetation and biotope mapping) were provided by the Lower Saxony Water Management, Coastal Defence and Nature Conservation Agency (NLWKN) for our analyses but is not permitted to be made publicly available.

Please contact the NLWKN’s branch office (Betriebsstelle) Lüneburg (https://www.nlwkn.niedersachsen.de/startseite/wir_uber_uns/geschaftsbereiche/geschaftsbereich_4/geschaeftsbereich-iv-regionaler-naturschutz-45362.html) to apply for access to the third-party data:

-https://www.nlwkn.niedersachsen.de/live/contact_form.php?a=46111&c=1999

-https://www.nlwkn.niedersachsen.de/live/contact_form.php?a=46111&c=2074

- +49 (0)4131 / 2209-202

- +49 (0)4131 / 2209-219

The third-party data is called “digital Data (Text-E-, Datenbank und shape-Entwurf zur Basiserfassung Lüneburger Heide/FFH Nr.070)”.

Funding

The project was funded by the Ministry of Food, Agriculture and Consumer Protection of Lower Saxony. This Open Access publication was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - 491094227 ”Open Access Publication Funding” and the University of Veterinary Medicine Hannover, Foundation. There was no additional external funding received for this study. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

2 Citations 1,223 Views 96 Downloads

Your institution may have Open Access funds available for qualifying authors. See if you qualify

Publish for free

Comment on Articles or Preprints and we'll waive your author fee
Learn more

Five new journals in Chemistry

Free to publish • Peer-reviewed • From PeerJ
Find out more