PeerJ Author & Reviewer

875 Points

Contributions by role

Contributions by subject area

Ivan Petrushin

PeerJ Author & Reviewer

Summary

Our group study microbial genomics of different ecosystems: freshwater sponges, plant rhizosphere and endosphere. With my students I develop custom bioinformatic tools and pipelines.

Bioinformatics Molecular Biology

Past or current institution affiliations

Irkutsk State University

Work details

Assistant Professor

Irkutsk State University

May 2015

Faculty of business-communications and informatics

Research fellow

Limnological institute SB RAS

May 2019 - December 2022

Websites

PeerJ Contributions

Reviewed 20

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

October 1, 2025

Establishment and evaluation of a circAdpgk-0001 knockdown method using CRISPR–Cas13d RNA-targeting technology

Sijia Huang, Hailan Qin, Bingxin Dai, Miao Liu, Jijia Shen

https://doi.org/10.7717/peerj.20123

October 1, 2025

EvoNEST, a modular application for comprehensive species-based sampling and data management in comparative biology

Daniele Liprandi, Tom Illing, Jonas O. Wolff

https://doi.org/10.7717/peerj-cs.3186

August 28, 2025

Uncovering tissue-specific endophytic microbiota composition and activity in Rhizophora mangle L.: a metagenomic and metatranscriptomic approach

Valentina Cárdenas-Hernández, Cesar Lemos-Lucumi, Nelson Toro-Perea

https://doi.org/10.7717/peerj.19728 PubMed 40895054

May 27, 2025

Genome-wide identification of PP2A gene family in Camellia sinensis reveals the potential role of CsPP2A-TON2/FASS1 in abiotic stress

Surjit Bhattacharjee, Abhirup Paul, Aradhana Jana, G. Meher Unnati, Deepak R., Ye Miao, Honglin Lu, Guoxin Shen, Neelam Mishra

https://doi.org/10.7717/peerj.19431 PubMed 40452937

May 9, 2025

Endophytic fungal community composition and function response to strawberry genotype and disease resistance

Hongjun Yang, Xu Zhang, Rui Wang, Quanzhi Wang, Yuanhua Wang, Geng Zhang, Pengpeng Sun, Bei Lu, Meiling Wu, Zhiming Yan

https://doi.org/10.7717/peerj.19383 PubMed 40356669

September 13, 2024

Eukaryotic plankton species diversity and community structure in the Xiao Jiang River (the primary tributary of Upper Yangtze River), Yunnan

XueRong Li, JiShan Wang, YunRui He, XiaoJun Yang, Mo Wang

https://doi.org/10.7717/peerj.17972 PubMed 39285919

May 27, 2024

The chloroplast genome inheritance pattern of the Deli-Nigerian prospection material (NPM) × Yangambi population of Elaeis guineensis Jacq

Nurul Shakina Mohd Talkah, Nur Afieqah Kaz Abdul Aziz, Muhammad Farid Abdul Rahim, Nurul Fatiha Farhana Hanafi, Mohd Azinuddin Ahmad Mokhtar, Ahmad Sofiman Othman

https://doi.org/10.7717/peerj.17335 PubMed 38818457

December 8, 2023

BERT-5mC: an interpretable model for predicting 5-methylcytosine sites of DNA based on BERT

Shuyu Wang, Yinbo Liu, Yufeng Liu, Yong Zhang, Xiaolei Zhu

https://doi.org/10.7717/peerj.16600 PubMed 38089911

November 28, 2023

Co-inoculation of mycorrhizal fungi and plant growth-promoting rhizobacteria improve growth, biochemical and physiological attributes in Dracocephalum kotschyi Boiss. under water deficit stress

Saeid Gasemi, Hassan Mahdavikia, Esmaeil Rezaei-Chiyaneh, Farzad Banaei-Asl, Aria Dolatabadian, Amir Sadeghpour

https://doi.org/10.7717/peerj.16474 PubMed 38047030

October 12, 2023

Microbiota composition and correlations with environmental factors in grass carp (Ctenopharyngodon idella) culture ponds in South China

Yingli Lian, Xiafei Zheng, Shouqi Xie, Dan A, Jian Wang, Jiayi Tang, Xuan Zhu, Baojun Shi