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Sven Rahmann
PeerJ Editor & Author
1,960 Points

Contributions by role

Author 270
Preprint Author 420
Editor 1,270

Contributions by subject area

Bioinformatics
Computational Biology
Biodiversity
Ecology
Evolutionary Studies
Genomics
Optimization Theory and Computation
Respiratory Medicine
Statistics
Computational Science
Genetics
Scientific Computing and Simulation
Taxonomy
Microbiology
Epidemiology
Data Mining and Machine Learning
Plant Science
Molecular Biology
Virology

Sven Rahmann

PeerJ Editor & Author

Summary

Prof. Sven Rahmann is professor of Algorithmic Bioinformatics at the Center for Bioinformatics, Saarland University, Saarbrücken, Germany. Previously, Sven was UA Ruhr Professor of Computational Biology and Genome Informatics at the Faculty of Medicine at Duisburg-Essen University (2011-2021), associate professor for Bioinformatics for High-Throughput Technologies at the Chair of Algorithm Engineering, Computer Science Department, TU Dortmund (2007-2011). Sven wrote his doctoral thesis on oligonucleotide design for microarrays in the Computational Molecular Biology group at the Max Planck Institute for Molecular Genetics in Berlin.

Algorithms & Analysis of Algorithms Bioinformatics Data Science Mathematical Biology Optimization Theory & Computation Scientific Computing & Simulation Theory & Formal Methods

Editing Journals

PeerJ - the Journal of Life & Environmental Sciences

Work details

Professor

Saarland University
April 2021
Computer Science and Center for Bioinformatics

Associate Professor

TU Dortmund, Germany
October 2007 - May 2011
Bioinformatics, Computer Science XI

Professor

University of Duisburg-Essen, Essen, Germany
June 2011 - March 2021
Genome Informatics, Institute of Human Genetics

Websites

  • Google Scholar

PeerJ Contributions

  • Articles 2
  • Preprints 7
  • Edited 9
January 10, 2017
Comprehensive transcriptome analysis provides new insights into nutritional strategies and phylogenetic relationships of chrysophytes
Daniela Beisser, Nadine Graupner, Christina Bock, Sabina Wodniok, Lars Grossmann, Matthijs Vos, Bernd Sures, Sven Rahmann, Jens Boenigk
https://doi.org/10.7717/peerj.2832 PubMed 28097055
September 30, 2014
Massively parallel read mapping on GPUs with the q-group index and PEANUT
Johannes Köster, Sven Rahmann
https://doi.org/10.7717/peerj.606 PubMed 25289191
March 3, 2018 - Version: 1
Protein complex similarity based on Weisfeiler-Lehman labeling
Bianca K Stöcker, Till Schäfer, Petra Mutzel, Johannes Köster, Nils Kriege, Sven Rahmann
https://doi.org/10.7287/peerj.preprints.26612v1
September 18, 2015 - Version: 2
Efficient duplicate rate estimation from subsamples of sequencing libraries
Christopher Schröder, Sven Rahmann
https://doi.org/10.7287/peerj.preprints.1298v2
September 17, 2015 - Version: 2
Poster abstracts of GCB 2015
Martin Eisenacher, Jörg Rahnenführer, Axel Mosig, Sven Rahmann
https://doi.org/10.7287/peerj.preprints.1350v2
September 7, 2015 - Version: 1
Invited presentations, junior research groups and research highlights at GCB 2015
Axel Mosig, Jörg Rahnenführer, Martin Eisenacher, Sven Rahmann
https://doi.org/10.7287/peerj.preprints.1352v1
September 2, 2015 - Version: 3
An optimization approach to detect differentially methylated regions from Whole Genome Bisulfite Sequencing data
Nina Hesse, Christopher Schröder, Sven Rahmann
https://doi.org/10.7287/peerj.preprints.1287v3
August 11, 2015 - Version: 1
From raw ion mobility measurements to disease classification: a comparison of analysis processes
Salome Horsch, Dominik Kopczynski, Jörg Ingo Baumbach, Jörg Rahnenführer, Sven Rahmann
https://doi.org/10.7287/peerj.preprints.1294v1
November 29, 2013 - Version: 2
Amplikyzer: Automated methylation analysis of amplicons from bisulfite flowgram sequencing
Sven Rahmann, Jasmin Beygo, Deniz Kanber, Marcel Martin, Bernhard Horsthemke, Karin Buiting
https://doi.org/10.7287/peerj.preprints.122v2

Academic Editor on

September 6, 2021
VGEA: an RNA viral assembly toolkit
Paul E. Oluniyi, Fehintola Ajogbasile, Judith Oguzie, Jessica Uwanibe, Adeyemi Kayode, Anise Happi, Alphonsus Ugwu, Testimony Olumade, Olusola Ogunsanya, Philomena Ehiaghe Eromon, Onikepe Folarin, Simon D.W. Frost, Jonathan Heeney, Christian T. Happi
https://doi.org/10.7717/peerj.12129 PubMed 34567846
December 16, 2019
Algorithms for efficiently collapsing reads with Unique Molecular Identifiers
Daniel Liu
https://doi.org/10.7717/peerj.8275 PubMed 31871845
June 19, 2019
Fuzzysplit: demultiplexing and trimming sequenced DNA with a declarative language
Daniel Liu
https://doi.org/10.7717/peerj.7170 PubMed 31249738
October 30, 2018
HAHap: a read-based haplotyping method using hierarchical assembly
Yu-Yu Lin, Ping Chun Wu, Pei-Lung Chen, Yen-Jen Oyang, Chien-Yu Chen
https://doi.org/10.7717/peerj.5852 PubMed 30397550
July 31, 2018
Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus
Andrew J. Page, Jacqueline A. Keane
https://doi.org/10.7717/peerj.5233 PubMed 30083440
July 20, 2016
DNA barcode data accurately assign higher spider taxa
Jonathan A. Coddington, Ingi Agnarsson, Ren-Chung Cheng, Klemen Čandek, Amy Driskell, Holger Frick, Matjaž Gregorič, Rok Kostanjšek, Christian Kropf, Matthew Kweskin, Tjaša Lokovšek, Miha Pipan, Nina Vidergar, Matjaž Kuntner
https://doi.org/10.7717/peerj.2201 PubMed 27547527
September 22, 2015
PopAlu: population-scale detection of Alu polymorphisms
Yu Qian, Birte Kehr, Bjarni V. Halldórsson
https://doi.org/10.7717/peerj.1269 PubMed 26417547
August 27, 2015
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang, Jeff Froula, Rob Egan, Zhong Wang
https://doi.org/10.7717/peerj.1165 PubMed 26336640
March 3, 2015
Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space
Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay
https://doi.org/10.7717/peerj.808 PubMed 25780763