Frédéric Mahé

PeerJ Author

Summary

Biodiversity Bioinformatics Ecology Ecosystem Science Evolutionary Studies Genomics Marine Biology Molecular Biology

Work details

bioinformatician

cirad

September 2015 - January 2038

Plant Health Institute of Montpellier

Websites

ORCID

PeerJ Contributions

October 18, 2016

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé

https://doi.org/10.7717/peerj.2584 PubMed 27781170

February 25, 2016

Comparison of three clustering approaches for detecting novel environmental microbial diversity

Dominik Forster, Micah Dunthorn, Thorsten Stoeck, Frédéric Mahé

https://doi.org/10.7717/peerj.1692 PubMed 26966652

December 10, 2015

Swarm v2: highly-scalable and high-resolution amplicon clustering

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7717/peerj.1420 PubMed 26713226

September 25, 2014

Swarm: robust and fast clustering method for amplicon-based studies

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7717/peerj.593 PubMed 25276506

September 1, 2016 - Version: 1

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé

https://doi.org/10.7287/peerj.preprints.2409v1

October 2, 2015 - Version: 1

Comparison of three clustering approaches for detecting novel environmental microbial diversity

Dominik Forster, Micah Dunthorn, Thorsten Stoeck, Frédéric Mahé

https://doi.org/10.7287/peerj.preprints.1414v1

July 10, 2015 - Version: 2

Swarm v2: highly-scalable and high-resolution amplicon clustering

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7287/peerj.preprints.1222v2

May 12, 2014 - Version: 1

Swarm: robust and fast clustering method for amplicon-based studies

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7287/peerj.preprints.386v1

1 Question

0

SWIPE as a faster alternative to SWPS3 for exact pairwise sequence comparisons

about Speeding up all-against-all protein comparisons while maintaining sensitivity by considering subsequence-level homology

1 Answer

0

Does this mean that the sub-seeds of an OTU have at most 2xd differences with the seed?