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Packaging data analytical work reproducibly using R (and friends)

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After spending much of the last day attempting to reproduce some recent work in textual analysis, I would love to see the #dh community more actively embrace research compendia and reproducibility workflows such as this one using R https://t.co/U3e4eAR3Zo
RT @dwhdai: @statsepi Not sure if already linked, but this may be a relevant paper: https://t.co/MRgkJF7xqj
RT @dwhdai: @statsepi Not sure if already linked, but this may be a relevant paper: https://t.co/MRgkJF7xqj
89 days ago
@statsepi Not sure if already linked, but this may be a relevant paper: https://t.co/MRgkJF7xqj
95 days ago
@PhDemetri @jennzhen That would be a DESCRIPTION file. Useful reference: https://t.co/MzJwPn5T0Q
I sort of made up my own system for solo-reproducible analyses (as in, I'm the only one working on this analysis, doing coding, stats, etc) based on recs by @benmarwick et al's "Packaging data analytical work reproducibly using R (and friends)" and on... https://t.co/NxMiCCOrLg
225 days ago
RT @benmarwick: @dgkeyes @EmilyRiederer In our @AmstatNews paper on research compendia, we recommend a non-standard, top-level analysis fol…
@dgkeyes @EmilyRiederer In our @AmstatNews paper on research compendia, we recommend a non-standard, top-level analysis folder to make the #rstats markdown file easy to find: https://t.co/TfoSJISyAY (@PeerJPreprints: https://t.co/kel620L6wn) https://t.co/YFQfwjwSrw
237 days ago
RT @thomas_mock: @dgkeyes Make sure to check out @dataandme 's answers on this community thread, too many good resources to link here! http…
RT @thomas_mock: @dgkeyes Make sure to check out @dataandme 's answers on this community thread, too many good resources to link here! http…
238 days ago
RT @thomas_mock: @dgkeyes Make sure to check out @dataandme 's answers on this community thread, too many good resources to link here! http…
RT @thomas_mock: @dgkeyes Make sure to check out @dataandme 's answers on this community thread, too many good resources to link here! http…
RT @thomas_mock: @dgkeyes Make sure to check out @dataandme 's answers on this community thread, too many good resources to link here! http…
@dgkeyes Make sure to check out @dataandme 's answers on this community thread, too many good resources to link here! https://t.co/gN5M96fSZr @JennyBryan Also has a community thread https://t.co/wRK2Wr9o4w @benmarwick has a nice paper as well: https://t.co/wn2Utbo6tl
@riveramichael @GKountourides https://t.co/NxMiCCOrLg
@dgkeyes @VizMonkey @ckhead check out this paper https://t.co/fdRUuoysqs
RT @data_datum: Packaging data analytical work reproducibly using R (and friends) [PeerJ Preprints] https://t.co/SxXNfF6Gr8
Packaging data analytical work reproducibly using R (and friends) [PeerJ Preprints] https://t.co/SxXNfF6Gr8
@gdsheriff @thehauer @auffhammer #openaccess pre-print is here on @PeerJPreprints https://t.co/kel620L6wn
RT @benmarwick: @beccabryanne We wrote about this in "Packaging Data Analytical Work Reproducibly Using R (and Friends)": https://t.co/TfoS…
353 days ago
RT @benmarwick: @beccabryanne We wrote about this in "Packaging Data Analytical Work Reproducibly Using R (and Friends)": https://t.co/TfoS…
@beccabryanne We wrote about this in "Packaging Data Analytical Work Reproducibly Using R (and Friends)": https://t.co/TfoSJISyAY (@PeerJPreprints https://t.co/Qd8g91OhjR), with rrtools as the accompanying compendium-making #rstats pkg: https://t.co/JOwkoeT8TR
RT @benmarwick: @lobrowR @gabbspalomo @Hao_and_Y Thanks! Our article "Packaging Data Analytical Work Reproducibly Using R (and Friends)" wa…
RT @benmarwick: @lobrowR @gabbspalomo @Hao_and_Y Thanks! Our article "Packaging Data Analytical Work Reproducibly Using R (and Friends)" wa…
RT @benmarwick: @lobrowR @gabbspalomo @Hao_and_Y Thanks! Our article "Packaging Data Analytical Work Reproducibly Using R (and Friends)" wa…
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Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Ben Marwick conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Carl Boettiger conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Lincoln Mullen conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

The research in this article did not generate any data or code. We describe several case studies.

Funding

BM was supported by an Australian Research Council Future Fellowship (FT140100101). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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