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Packaging data analytical work reproducibly using R (and friends)

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RT @tracykteal: Idea of compendium packaging data, code and text important for reproducibility. Great paper on creating a research compendi…
20 hours ago
Idea of compendium packaging data, code and text important for reproducibility. Great paper on creating a research compendium from @benmarwick @cboettig Lincoln Mullen https://t.co/rnHyuEYsYA
@five9a2 @travisci I provide a template like this one: https://t.co/m0uivjqpID as part of the assignment (via @GitHub Classroom). This follows the same compendium model I use for research projects; a la https://t.co/xu0c1ctaFb (1/2)
RT @frod_san: @nic_crane I like starting w/ pkg template structure, which can then evolve as complicated as needed (eg. tests, website, etc…
RT @frod_san: @nic_crane I like starting w/ pkg template structure, which can then evolve as complicated as needed (eg. tests, website, etc…
@nic_crane I like starting w/ pkg template structure, which can then evolve as complicated as needed (eg. tests, website, etc). Many advantages discussed in https://t.co/OyIM5m6Jon, eg having CI is great @cboettig's lighter compendium approach makes lot of sense too https://t.co/0kOt1rO5mC
RT @benmarwick: @cantabile Thanks! We also have an #openaccess preprint of that paper here on @thePeerJ https://t.co/Qd8g91OhjR
@cantabile Thanks! We also have an #openaccess preprint of that paper here on @thePeerJ https://t.co/Qd8g91OhjR
154 days ago
RT @lobrowR: Also in this data sci series: "Packaging data analytical work reproducibly using R (& friends)" https://t.co/wdSynLidTW (Marwi…
154 days ago
RT @lobrowR: Also in this data sci series: "Packaging data analytical work reproducibly using R (& friends)" https://t.co/wdSynLidTW (Marwi…
Also in this data sci series: "Packaging data analytical work reproducibly using R (& friends)" https://t.co/wdSynLidTW (Marwic @cboettig & Mullen). I start my course giving students the spreadsheets papers (https://t.co/uVhcYbyycz) & aim by the end to introduce this #rstats https://t.co/Nj9nWnr1Oh
@Heinonmatti @annemscheel @JuliaHaaf @matherion their version numbers are better communicated to others in machine-readable research compendium files for transparency & reproducibility. We talk a bit about this in https://t.co/Qd8g91OhjR
RT @benmarwick: @ma_salmon @ecojydrology We have an updated version of that essay in @thePeerJ https://t.co/Qd8g91OhjR by @cboettig, @linco…
RT @benmarwick: @ma_salmon @ecojydrology We have an updated version of that essay in @thePeerJ https://t.co/Qd8g91OhjR by @cboettig, @linco…
@ma_salmon @ecojydrology We have an updated version of that essay in @thePeerJ https://t.co/Qd8g91OhjR by @cboettig, @lincolnmullen and me: "Packaging data analytical work reproducibly using R (and friends)": https://t.co/kel620L6wn
@ma_salmon @ecojydrology We have an updated version of that essay in @thePeerJ https://t.co/Qd8g91OhjR by @cboettig, @lincolnmullen and me: "Packaging data analytical work reproducibly using R (and friends)": https://t.co/kel620L6wn
RT @thosjleeper: @fusaroli Not a tutorial, but this from @cboettig @lincolnmullen @benmarwick may be useful: https://t.co/4CIllNCaoL
@fusaroli Not a tutorial, but this from @cboettig @lincolnmullen @benmarwick may be useful: https://t.co/4CIllNCaoL
@thehauer @suzie_birch @electricarchaeo @figshare @github @OpenContext Yes, including the Rmd is common, as in the figure below. I try to do it every time. We review several popular approaches to bundling #rstats code and data in https://t.co/Qd8g91OhjR https://t.co/G3Lt1GeyVk
RT @benmarwick: @electricarchaeo Many examples of compendia across the sciences using #rstats reviewed in our paper here: https://t.co/kel…
303 days ago
RT @benmarwick: @electricarchaeo Many examples of compendia across the sciences using #rstats reviewed in our paper here: https://t.co/kel…
@electricarchaeo Many examples of compendia across the sciences using #rstats reviewed in our paper here: https://t.co/kel620L6wn https://t.co/rrbCYBf0Hc
RT @BenBondLamberty: Wrote a ms citing @benmarwick 's #rstats reproducibility paper, so seems like a good time to re-tweet it. "Packaging d…
303 days ago
RT @BenBondLamberty: Wrote a ms citing @benmarwick 's #rstats reproducibility paper, so seems like a good time to re-tweet it. "Packaging d…
RT @BenBondLamberty: Wrote a ms citing @benmarwick 's #rstats reproducibility paper, so seems like a good time to re-tweet it. "Packaging d…
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Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Ben Marwick conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Carl Boettiger conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper.

Lincoln Mullen conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

The research in this article did not generate any data or code. We describe several case studies.

Funding

BM was supported by an Australian Research Council Future Fellowship (FT140100101). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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