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Divergence of HPV16 variants reflects loci undergoing inter-host positive selection, potentially immunologic selection

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165 days ago
RT @chasewnelson: Check out our research on HPV, presented at SMBE, in @PeerJPreprints https://t.co/9PlhJZiJ5j #SMBE17 #Bioinformatics #HPV…
RT @chasewnelson: Check out our research on HPV, presented at SMBE, in @PeerJPreprints https://t.co/9PlhJZiJ5j #SMBE17 #Bioinformatics #HPV…
RT @chasewnelson: Check out our research on HPV, presented at SMBE, in @PeerJPreprints https://t.co/9PlhJZiJ5j #SMBE17 #Bioinformatics #HPV…
RT @chasewnelson: Check out our research on HPV, presented at SMBE, in @PeerJPreprints https://t.co/9PlhJZiJ5j #SMBE17 #Bioinformatics #HPV…
Check out our research on HPV, presented at SMBE, in @PeerJPreprints https://t.co/9PlhJZiJ5j #SMBE17 #Bioinformatics #HPV #Evolution #Cancer
166 days ago
Divergence of HPV16 variants reflects loci undergoing inter-host positive selection, potentially immunologic… https://t.co/3l8InXkmIN
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Highlighted in The SMBE 2017 Collection

Supplemental Information

Additional Information

Competing Interests

Thomas Lorey and Tina Raine-Bennett are employees of Kaiser Permanente

Author Contributions

Chase W. Nelson conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Apurva Narechania conceived and designed the experiments, reviewed drafts of the paper.

Robert D. Burk reviewed drafts of the paper.

Mark Schiffman reviewed drafts of the paper.

Michael Cullen reviewed drafts of the paper.

Joseph F. Boland reviewed drafts of the paper.

Zigui Chen reviewed drafts of the paper.

Nicolas Wentzensen reviewed drafts of the paper.

Qi Yang reviewed drafts of the paper.

Jason Mitchell reviewed drafts of the paper.

David Robertson reviewed drafts of the paper.

Sara Bass reviewed drafts of the paper.

Laurie Burdett reviewed drafts of the paper.

Tina Raine-Bennett reviewed drafts of the paper.

Thomas Lorey reviewed drafts of the paper.

Meredith Yeager conceived and designed the experiments, reviewed drafts of the paper.

Lisa Mirabello conceived and designed the experiments, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

https://github.com/chasewnelson/snpgenie

Funding

C.W.N. was supported by a Gerstner Scholars Fellowship from the Gerstner Family Foundation at the American Museum of Natural History. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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