Visitors   Views   Downloads

Automatic definition of robust microbiome sub-states in longitudinal data

View preprint
RT @markmoby: "Automatic definition of robust microbiome sub-states in longitudinal data" Preprint published today in @PeerJPreprints http…
RT @markmoby: "Automatic definition of robust microbiome sub-states in longitudinal data" Preprint published today in @PeerJPreprints http…
RT @markmoby: "Automatic definition of robust microbiome sub-states in longitudinal data" Preprint published today in @PeerJPreprints http…
RT @markmoby: "Automatic definition of robust microbiome sub-states in longitudinal data" Preprint published today in @PeerJPreprints http…
RT @markmoby: "Automatic definition of robust microbiome sub-states in longitudinal data" Preprint published today in @PeerJPreprints http…
97 days ago
"Automatic definition of robust microbiome sub-states in longitudinal data" Preprint published today in @PeerJPreprints https://t.co/94f2FPVqGm #Bioinformatics #ComputationalBiology #Microbiology #Microbiome
RT @host_microbe: Automatic definition of robust microbiome sub-states in longitudinal data https://t.co/qhS9RihFml
Automatic definition of robust microbiome sub-states in longitudinal data https://t.co/6FI5ovILTr #microbiomebot
Automatic definition of robust microbiome sub-states in longitudinal data https://t.co/qhS9RihFml
100 days ago
Automatic definition of robust microbiome sub-states in longitudinal data https://t.co/afeY7h0Vhh
NOT PEER-REVIEWED
"PeerJ Preprints" is a venue for early communication or feedback before peer review. Data may be preliminary.

Supplemental Information

Robust clustering evaluation, with HCLUST algorithm, in different datasets

From top to bottom: (1) Human gut microbiome (David2014 et al.,2014), (2) Chick gut (Ballou et al.,2016), (3) Vagina (Gajer et al.,2012), (4) Preterm infant gut (La Rosa et al.,2014).

DOI: 10.7287/peerj.preprints.26657v1/supp-1

Clusters in Chick Gut with different number of taxa, represented as Principal Coordinates graphs

Top row: default taxonomic level (i.e. species), bottom row: genus aggregation. Columns from left to right: all, dominant and non-dominant.

DOI: 10.7287/peerj.preprints.26657v1/supp-2

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Beatriz García-Jiménez conceived and designed the experiments, performed the experiments, analyzed the data, contributed reagents/materials/analysis tools, prepared figures and/or tables, authored or reviewed drafts of the paper, approved the final draft.

Mark D Wilkinson conceived and designed the experiments, analyzed the data, authored or reviewed drafts of the paper, approved the final draft.

Data Deposition

The following information was supplied regarding data availability:

Source code: https://github.com/wilkinsonlab/robust-clustering-metagenomics

Output data: http://doi.org/10.5281/zenodo.167376

Funding

This work was funded by the Isaac Peral and/or Marie Curie co-fund Programme at UPM and the Fundacion BBVA. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


Add your feedback

Before adding feedback, consider if it can be asked as a question instead, and if so then use the Question tab. Pointing out typos is fine, but authors are encouraged to accept only substantially helpful feedback.

Some Markdown syntax is allowed: _italic_ **bold** ^superscript^ ~subscript~ %%blockquote%% [link text](link URL)
 
By posting this you agree to PeerJ's commenting policies