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Embracing heterogeneity: Building the Tree of Life and the future of phylogenomics

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RT @_introgression: peerJ: Embracing heterogeneity: Building the Tree of Life and the future of phylogenomics https://t.co/dWv2ruMJIH
RT @antonelli_lab: Check out our latest collaborative effort! Embracing heterogeneity: Building the Tree of Life and the future of phylogen…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
120 days ago
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
121 days ago
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @antonelli_lab: Check out our latest collaborative effort! Embracing heterogeneity: Building the Tree of Life and the future of phylogen…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @thamnobravo: Some thoughts about the thriving field of phylogenomics. Any feedback is more than welcome! Embracing heterogeneity in phy…
122 days ago
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @antonelli_lab: Check out our latest collaborative effort! Embracing heterogeneity: Building the Tree of Life and the future of phylogen…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
RT @PREAUX_FISH: Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitat…
Absolutely excellent paper by @thamnobravo and colleagues on the future of phylogenomics - covers natural history, limitations in methods, what we should do with genomes and building the Tree of Life. Great job https://t.co/M3ivrW3ovp
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Supplemental Information

Supplementary Table S1: Information on number of species, number of loci, and data set size contained in 164 phylogenomic data sets

Each row represents a data set included in Figure 2. For further details on how this table was built, please see section "Compilation of data in Supplementary Table S1" in the Supplementary Material.

DOI: 10.7287/peerj.preprints.26449v3/supp-1

Supplementary Materials: This file describes the compilation of data contained in Supplementary Table S1 and in Figure 1

DOI: 10.7287/peerj.preprints.26449v3/supp-2

Additional Information

Competing Interests

Alexander Schliep and Scott V. Edwards are Academic Editors for PeerJ.

Author Contributions

Gustavo A Bravo analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Alexandre Antonelli wrote the paper, reviewed drafts of the paper.

Christine D Bacon wrote the paper, reviewed drafts of the paper.

Krzysztof Bartoszek wrote the paper, reviewed drafts of the paper.

Mozes Blom wrote the paper, reviewed drafts of the paper.

Stella Huynh wrote the paper.

Graham Jones wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

L. Lacey Knowles wrote the paper, reviewed drafts of the paper.

Sangeet Lamichhaney wrote the paper, reviewed drafts of the paper.

Thomas Marcussen wrote the paper, reviewed drafts of the paper.

Hélène Morlon wrote the paper, reviewed drafts of the paper.

Luay Nakhleh wrote the paper.

Bengt Oxelman conceived and designed the experiments, wrote the paper, reviewed drafts of the paper.

Bernard Pfeil wrote the paper, reviewed drafts of the paper.

Alexander Schliep wrote the paper.

Niklas Wahlberg wrote the paper.

Fernanda Werneck wrote the paper, reviewed drafts of the paper.

John Wiedenhoeft wrote the paper, reviewed drafts of the paper.

Sandi Willows-Munro wrote the paper, reviewed drafts of the paper.

Scott V Edwards conceived and designed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Funding

The Gothenburg Center for Advanced Studies (GoCas) workshop 'Origins of Biodiversity' was funded by Chalmers University of Technology and the University of Gothenburg. The following researchers are supported by scholarship or research grants from the following agencies: Swedish Research Council (B.O., A.A.), US National Science Foundation, the European Research Council under the European Union's Seventh Framework Programme (FP/2007-2013, ERC Grant Agreement n. 331024 to A.A.), the Swedish Foundation for Strategic Research and a Wallenberg Academy Fellowship (A.A.). F.P.W. would like to thank Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Partnerships for Enhanced Engagement in Research from the U.S. National Academy of Sciences, the U.S. Agency of International Development (PEER NAS/USAID), and the L'Oreal-Unesco For Women in Science Program. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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