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July 2017

Table of Contents - PeerJ Preprints

July 31, 2017 - Version: 1

Sicegar: R package for sigmoidal and double-sigmoidal curve fitting

M. Umut Caglar, Ashley I. Teufel, Claus O Wilke

https://doi.org/10.7287/peerj.preprints.3116v1

July 12, 2017 - Version: 4

Atropos: specific, sensitive, and speedy trimming of sequencing reads

John P Didion, Marcel Martin, Francis S Collins

https://doi.org/10.7287/peerj.preprints.2452v4

July 18, 2017 - Version: 1

Predicting context specific enhancer-promoter interactions from ChIP-Seq time course data

Tomasz Dzida, Mudassar Iqbal, Iryna Charapitsa, George Reid, Henk Stunnenberg, Filomena Matarese, Antti Honkela, Magnus Rattray

https://doi.org/10.7287/peerj.preprints.3093v1

July 31, 2017 - Version: 1

LuxS quorum sensing system, its protein modeling and active-binding sites and phylogenetic analysis from Aeromonas hydrophila

Farman Ali, Zujie Yao, Wanxin Li, Sun Lina, Wenxiong Lin, Xiangmin Lin

https://doi.org/10.7287/peerj.preprints.3109v1

July 27, 2017 - Version: 1

PIsCO: A Performance indicators framework for collection of bioinformatics resource metrics

Haydee Artaza, John M. Hancock, Rafael C. Jimenez, Manuel Corpas

https://doi.org/10.7287/peerj.preprints.3112v1

July 25, 2017 - Version: 1

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Ruth E Timme, Hugh Rand, Martin Shumway, Eija K Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glen Tillman, Stephanie Defibaugh-Chavez, Heather A Carleton, William A Klimke, Lee S Katz

https://doi.org/10.7287/peerj.preprints.3107v1

July 3, 2017 - Version: 1

Divergence of HPV16 variants reflects loci undergoing inter-host positive selection, potentially immunologic selection

Chase W. Nelson, Apurva Narechania, Robert D. Burk, Mark Schiffman, Michael Cullen, Joseph F. Boland, Zigui Chen, Nicolas Wentzensen, Qi Yang, Jason Mitchell, David Robertson, Sara Bass, Laurie Burdett, Tina Raine-Bennett, Thomas Lorey, Meredith Yeager, Lisa Mirabello

https://doi.org/10.7287/peerj.preprints.3070v1

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