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Supplemental Information

Secondary structure analyses of LuxS

(C) Stand for coil, (e) extended strand, (h) alpha-helix and (t) beta turn

DOI: 10.7287/peerj.preprints.3109v1/supp-1

Distribution of secondary structure elements in LuxS

DOI: 10.7287/peerj.preprints.3109v1/supp-2

PROSA result showing Z-score

DOI: 10.7287/peerj.preprints.3109v1/supp-3

Ramachandran plot classifies the residues falls int o specific regions is shown in quadrangle

DOI: 10.7287/peerj.preprints.3109v1/supp-4

Primary structure analysis of LuxS

Total number of negatively charged residues (Asp + Glu) = 23; Total number of positively charged residues (Arg + Lys) = 15; Grand average of hydropathicity (GRAVY) = -0.179; Number of amino acids = 169; Molecular weight = 18777.45; Theoretical pI: 5.30

DOI: 10.7287/peerj.preprints.3109v1/supp-5

Identification of functional regions/domain in LuxS

DOI: 10.7287/peerj.preprints.3109v1/supp-6

Sequence alignment between template and the target

E-value:4.9e-118, Bit-Score:880 Ident.:78.11% Positives :100.0% Query Length:169 Match Length:169

DOI: 10.7287/peerj.preprints.3109v1/supp-7

Additional Information

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Farman Ali conceived and designed the experiments, performed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables.

Zujie Yao conceived and designed the experiments, contributed reagents/materials/analysis tools, prepared figures and/or tables.

Wanxin Li wrote the paper, prepared figures and/or tables.

Sun Lina contributed reagents/materials/analysis tools, prepared figures and/or tables.

Wenxiong Lin contributed reagents/materials/analysis tools, prepared figures and/or tables, reviewed drafts of the paper, this author provides the guideline and check the proper analysis.

Xiangmin Lin conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper, he reviewed the draft..

Funding

This work was sponsored by grants from NSFC projects (Nos. 31470238, 31670129), the Fujian Agricultural and Forestry University Foundation for Distinguished Young Scholars (No. XJQ201201), and Fujian-Taiwan Joint Innovative Centre for Germplasm Resources and Cultivation of Crop (grant No. 2015-75. FJ 2011 Program, China). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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