PeerJ Preprints - Table of Contents

Lucas Sinclair, Umer Z Ijaz, Lars Jensen, Marco JL Coolen, Cecile Gubry-Rangin, Alica Chroňáková, Anastasis Oulas, Christina Pavloudi, Julia Schnetzer, Aaron Weimann, Ali Ijaz, Alexander Eiler, Christopher Quince, Evangelos Pafilis

https://doi.org/10.7287/peerj.preprints.2317v1

July 5, 2016 - Version: 1

Are controversies in science driven by randomness and misbeliefs?

Marlena Siwiak, Tomasz Wyszomirski, Piotr Zielenkiewicz

https://doi.org/10.7287/peerj.preprints.2249v1

July 1, 2016 - Version: 1

The evolution of logic circuits for the purpose of protein contact map prediction

Samuel D Chapman, Christoph Adami, Claus O Wilke, Dukka B KC

https://doi.org/10.7287/peerj.preprints.2197v1

July 22, 2016 - Version: 3

Meta-Barcoding accelerates species discovery and unravel great biodiversity of benthic invertebrates in marine sediments in Campos basin, Brazil

Milena Marcela D P Schettini, Raony G C C L Cardenas, Marcella A A Detoni, Mauro F Rebelo

https://doi.org/10.7287/peerj.preprints.2103v3

July 12, 2016 - Version: 1

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Cédric Cabau, Frédéric Escudié, Anis Djari, Yann Guiguen, Julien Bobe, Christophe Klopp

https://doi.org/10.7287/peerj.preprints.2284v1

July 20, 2016 - Version: 1

Computational characterization and epitope prediction for Bet-v1 like protein of Cannabis sativa

Zarrin Basharat

https://doi.org/10.7287/peerj.preprints.2305v1

July 11, 2016 - Version: 1

EvoPER -- An R package for applying evolutionary computation methods in the parameter estimation of individual-based models implemented in Repast

Antonio Prestes García, Alfonso Rodríguez-Patón

https://doi.org/10.7287/peerj.preprints.2279v1

July 1, 2016 - Version: 1

Learning protein folding and evolution with a snake puzzle

Gonzalo S Nido, Ludovica Bachschmid-Romano, Ugo Bastolla, Alberto Pascual-García

https://doi.org/10.7287/peerj.preprints.2201v1

July 3, 2016 - Version: 1

Ten simple rules for writing a comparative software review

Amy Beeston, Larisa Blazic, Neil Chue Hong, Richard Domander, Ross Mounce, Robin T Wilson

https://doi.org/10.7287/peerj.preprints.2221v1

July 6, 2016 - Version: 1

A workflow to integrate pre-processing, analysis and comparison of MALDI-ToF mass spectra in GeenaR

Eugenio Del Prete, Angelo Facchiano, Aldo Profumo, Claudia Angelini, Paolo Romano

https://doi.org/10.7287/peerj.preprints.2255v1

July 2, 2016 - Version: 1

A tool for the comparison of transcript differential expression analysis pipelines

Stefano Beretta, Yuri Pirola, Valeria Ranzani, Grazisa Rossetti, Raoul Bonnal, Raffaella Rizzi, Gianluca Della Vedova, Massimiliano Pagani, Paola Bonizzoni

https://doi.org/10.7287/peerj.preprints.2212v1

July 1, 2016 - Version: 1

Greater than X kb: A quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA

Daniel G. Mulcahy, Kenneth S. Macdonald III, Seán G. Brady, Christopher Meyer, Katharine B. Barker, Jonathan Coddington

https://doi.org/10.7287/peerj.preprints.2202v1

July 2, 2016 - Version: 1

Standard codon substitution models overestimate purifying selection for non-stationary data

Benjamin D Kaehler, Von Bing Yap, Gavin A Huttley

https://doi.org/10.7287/peerj.preprints.2218v1

July 6, 2016 - Version: 1

Natural compounds as potential PI3K-AKT1 signaling pathway inhibitors by means of pharmacophore modeling

Serena Dotolo, Angelo Gaeta, Angelo Facchiano

https://doi.org/10.7287/peerj.preprints.2254v1

July 19, 2016 - Version: 1

A cellular automata to simulate the growth and death of a cell culture

Giuseppe Guerrisi, Deborah Giordano, Anna Marabotti, Giancarlo Raiconi, Roberto Tagliaferri

https://doi.org/10.7287/peerj.preprints.2301v1

July 2, 2016 - Version: 1

IVaCS: an Integrated Variant Calling System

Matteo Chiara, Giovanni Chillemi, Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziano Flati, Silvia Gioiosa, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò

https://doi.org/10.7287/peerj.preprints.2213v1

July 18, 2016 - Version: 1

Conserved domain and structure analysis of a putative polyphosphate kinase from Buruli ulcer causing bacterium

Zarrin Basharat

https://doi.org/10.7287/peerj.preprints.2296v1

July 1, 2016 - Version: 1

Recent developments of the cell line integrated molecular authentication database

Paolo D Romano, Paola Visconti, Barbara Parodi

https://doi.org/10.7287/peerj.preprints.2194v1

July 6, 2016 - Version: 1

Microbial Transglutaminases investigations for selecting putative forms of industrial interest

Deborah Giordano, Angelo Facchiano