John Everett Parkinson

PeerJ Author & Reviewer

Summary

I study coral reefs and climate change using molecular techniques. I am particularly interested in symbiosis ecology and evolution, transcriptional responses to heat stress, and Symbiodiniaceae taxonomy. Much of my work is focused on coral restoration.

Bioinformatics Ecology Marine Biology Molecular Biology Taxonomy

Past or current institution affiliations

Oregon State University

University of South Florida

University of the Ryukyus

Work details

Assistant Professor

University of South Florida

August 2019

Integrative Biology

Websites

PeerJ Contributions

May 2, 2023

Building consensus around the assessment and interpretation of Symbiodiniaceae diversity

Sarah W. Davies, Matthew H. Gamache, Lauren I. Howe-Kerr, Nicola G. Kriefall, Andrew C. Baker, Anastazia T. Banaszak, Line Kolind Bay, Anthony J. Bellantuono, Debashish Bhattacharya, Cheong Xin Chan, Danielle C. Claar, Mary Alice Coffroth, Ross Cunning, Simon K. Davy, Javier del Campo, Erika M. Díaz-Almeyda, Jörg C. Frommlet, Lauren E. Fuess, Raúl A. González-Pech, Tamar L. Goulet, Kenneth D. Hoadley, Emily J. Howells, Benjamin C. C. Hume, Dustin W. Kemp, Carly D. Kenkel, Sheila A. Kitchen, Todd C. LaJeunesse, Senjie Lin, Shelby E. McIlroy, Ryan McMinds, Matthew R. Nitschke, Clinton A. Oakley, Raquel S. Peixoto, Carlos Prada, Hollie M. Putnam, Kate Quigley, Hannah G. Reich, James Davis Reimer, Mauricio Rodriguez-Lanetty, Stephanie M. Rosales, Osama S. Saad, Eugenia M. Sampayo, Scott R. Santos, Eiichi Shoguchi, Edward G. Smith, Michael Stat, Timothy G. Stephens, Marie E. Strader, David J. Suggett, Timothy D. Swain, Cawa Tran, Nikki Traylor-Knowles, Christian R. Voolstra, Mark E. Warner, Virginia M. Weis, Rachel M. Wright, Tingting Xiang, Hiroshi Yamashita, Maren Ziegler, Adrienne M. S. Correa, John Everett Parkinson

https://doi.org/10.7717/peerj.15023 PubMed 37151292

October 3, 2017

A preliminary survey of zoantharian endosymbionts shows high genetic variation over small geographic scales on Okinawa-jima Island, Japan

Hatsuko Noda, John Everett Parkinson, Sung-Yin Yang, James Davis Reimer

https://doi.org/10.7717/peerj.3740 PubMed 29018596

March 28, 2016

A citizen science approach to monitoring bleaching in the zoantharian Palythoa tuberculosa

John Everett Parkinson, Sung-Yin Yang, Iori Kawamura, Gordon Byron, Peter Alan Todd, James Davis Reimer

https://doi.org/10.7717/peerj.1815 PubMed 27069784

February 9, 2018 - Version: 2

Extensive transcriptional variation poses a challenge to thermal stress biomarker development for endangered corals

John E Parkinson, Erich Bartels, Meghann K Devlin-Durante, Caitlin Lustic, Ken Nedimyer, Stephanie Schopmeyer, Diego Lirman, Todd C LaJeunesse, Iliana B Baums

https://doi.org/10.7287/peerj.preprints.3158v2

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

October 2, 2017

Diverse responses of Symbiodinium types to menthol and DCMU treatment

Jih-Terng Wang, Shashank Keshavmurthy, Tzu-Ying Chu, Chaolun Allen Chen

https://doi.org/10.7717/peerj.3843 PubMed 29018600

July 6, 2016

The implementation of rare events logistic regression to predict the distribution of mesophotic hard corals across the main Hawaiian Islands

Lindsay M. Veazey, Erik C. Franklin, Christopher Kelley, John Rooney, L. Neil Frazer, Robert J. Toonen

https://doi.org/10.7717/peerj.2189 PubMed 27441122

March 28, 2016

Gene expression profiles during short-term heat stress; branching vs. massive Scleractinian corals of the Red Sea

Keren Maor-Landaw, Oren Levy

https://doi.org/10.7717/peerj.1814 PubMed 27069783