Biology & Life sciences - Table of Contents

May 2, 2023

Building consensus around the assessment and interpretation of Symbiodiniaceae diversity

Sarah W. Davies, Matthew H. Gamache, Lauren I. Howe-Kerr, Nicola G. Kriefall, Andrew C. Baker, Anastazia T. Banaszak, Line Kolind Bay, Anthony J. Bellantuono, Debashish Bhattacharya, Cheong Xin Chan, Danielle C. Claar, Mary Alice Coffroth, Ross Cunning, Simon K. Davy, Javier del Campo, Erika M. Díaz-Almeyda, Jörg C. Frommlet, Lauren E. Fuess, Raúl A. González-Pech, Tamar L. Goulet, Kenneth D. Hoadley, Emily J. Howells, Benjamin C. C. Hume, Dustin W. Kemp, Carly D. Kenkel, Sheila A. Kitchen, Todd C. LaJeunesse, Senjie Lin, Shelby E. McIlroy, Ryan McMinds, Matthew R. Nitschke, Clinton A. Oakley, Raquel S. Peixoto, Carlos Prada, Hollie M. Putnam, Kate Quigley, Hannah G. Reich, James Davis Reimer, Mauricio Rodriguez-Lanetty, Stephanie M. Rosales, Osama S. Saad, Eugenia M. Sampayo, Scott R. Santos, Eiichi Shoguchi, Edward G. Smith, Michael Stat, Timothy G. Stephens, Marie E. Strader, David J. Suggett, Timothy D. Swain, Cawa Tran, Nikki Traylor-Knowles, Christian R. Voolstra, Mark E. Warner, Virginia M. Weis, Rachel M. Wright, Tingting Xiang, Hiroshi Yamashita, Maren Ziegler, Adrienne M. S. Correa, John Everett Parkinson

https://doi.org/10.7717/peerj.15023 PubMed 37151292

May 11, 2023

Incidence, genetic diversity, and antimicrobial resistance profiles of Vibrio parahaemolyticus in seafood in Bangkok and eastern Thailand

Chartchai Changsen, Somsak Likhitrattanapisal, Kamonwan Lunha, Wiyada Chumpol, Surasak Jiemsup, Anuphap Prachumwat, Darin Kongkasuriyachai, Supawadee Ingsriswang, Soraya Chaturongakul, Aekarin Lamalee, Suganya Yongkiettrakul, Sureemas Buates

https://doi.org/10.7717/peerj.15283 PubMed 37193031

May 24, 2023

minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data

Kian Soon Hoon, Deborah C. Holt, Sarah Auburn, Peter Shaw, Philip M. Giffard

https://doi.org/10.7717/peerj.15339 PubMed 37250706

May 10, 2023

Zinc solubilizing bacteria and their potential as bioinoculant for growth promotion of green soybean (Glycine max L. Merr.)

Moltira Srithaworn, Jieb Jaroenthanyakorn, Janpen Tangjitjaroenkun, Chanwit Suriyachadkun, Orawan Chunhachart

https://doi.org/10.7717/peerj.15128 PubMed 37193032

May 9, 2023

¹H NMR fecal metabolic phenotyping of periductal fibrosis- and cholangiocarcinoma-specific metabotypes defining perturbation in gut microbial-host co-metabolism

Rujikorn Treeriya, Phuc N. Ho, Attapol Titapun, Poramate Klanrit, Manida Suksawat, Thanaporn Kulthawatsiri, Suphasarang Sirirattanakul, Watcharin Loilome, Nisana Namwat, Arporn Wangwiwatsin, Nittaya Chamadol, Narong Khuntikeo, Jutarop Phetcharaburanin

https://doi.org/10.7717/peerj.15386 PubMed 37187520

May 9, 2023

Factors shaping the gut microbiome of five species of lizards from different habitats

Diana S. Vasconcelos, D. James Harris, Isabel Damas-Moreira, Ana Pereira, Raquel Xavier

https://doi.org/10.7717/peerj.15146 PubMed 37187519

May 12, 2023

A new application of multiplex PCR combined with membrane biochip assay for rapid detection of 9 common pathogens in sepsis

Yun Li, LuJie Zhao, Jingye Wang, Peipei Qi, Zhongfa Yang, Xiangyu Zou, Fujun Peng, Shengguang Li

https://doi.org/10.7717/peerj.15325 PubMed 37197582

May 8, 2023

The effect of combined dietary supplementation of herbal additives on carcass traits, meat quality, immunity and cecal microbiota composition in Hungarian white geese

Guilin Fu, Yuxuan Zhou, Yupu Song, Chang Liu, Manjie Hu, Qiuyu Xie, Jingbo Wang, Yuxin Zhang, Yumeng Shi, Shuhao Chen, Jingtao Hu, Yongfeng Sun

https://doi.org/10.7717/peerj.15316 PubMed 37180579

May 15, 2023

Characterisation of pellicle-forming ability in clinical carbapenem-resistant Acinetobacter baumannii

Heng Kang Ng, Suat Moi Puah, Cindy Shuan Ju Teh, Nuryana Idris, Kek Heng Chua

https://doi.org/10.7717/peerj.15304 PubMed 37214089

May 3, 2023

Dynamics of bacterial and archaeal communities during horse bedding and green waste composting

Vanessa Grenier, Emmanuel Gonzalez, Nicholas JB Brereton, Frederic E. Pitre

https://doi.org/10.7717/peerj.15239 PubMed 37159830

May 23, 2023

Virioplankton and virus-induced mortality of prokaryotes in the Kara Sea (Arctic) in summer

Alexander Ivanovich Kopylov, Elena Anatoliyevna Zabotkina, Andrey Fiodorovich Sazhin, Nadezda Romanova, Nikolay Belyaev, Anastasia Drozdova

https://doi.org/10.7717/peerj.15457 PubMed 37250716

May 16, 2023

Microbial biomarker detection in shrimp larvae rearing water as putative bio-surveillance proxies in shrimp aquaculture

Nolwenn Callac, Carolane Giraud, Viviane Boulo, Nelly Wabete, Dominique Pham

https://doi.org/10.7717/peerj.15201 PubMed 37214103

May 8, 2023

Effects of defoliation and nitrogen on carbon dioxide (CO₂) emissions and microbial communities in soils of cherry tree orchards

Jing Wang, Yibo Wang, Ruifang Xue, Dandan Wang, Wenhui Nan

https://doi.org/10.7717/peerj.15276 PubMed 37180582

May 15, 2023

Identification and functional analysis of non-coding regulatory small RNA FenSr3 in Bacillus amyloliquefaciens LPB-18

Panping Yang, Chengxin Geng, Shaohui Zhu, Zhen Zhou, Muhammad Bilal, Chengyuan Gu, Hai Xu, Linchun Ji, Benchang Xiao, Jingye Wang, Zhoujie Qian, Li Zhao, Yuping Zhao, Hedong Lu

https://doi.org/10.7717/peerj.15236 PubMed 37214100

May 24, 2023

Microbial diversity patterns in the root zone of two Meconopsis plants on the Qinghai-Tibet Plateau

Shuting Chen, Pengxi Cao, Ting Li, Yuyan Wang, Xing Liu

https://doi.org/10.7717/peerj.15361 PubMed 37250704

May 16, 2023

Antibiotic resistance characteristics and risk factors analysis of Helicobacter pylori strains isolated from patients in Liaoning Province, an area in North China

Yanmeng Wang, Yiling Li, Yuehua Gong, Yuzhen Dong, Jing Sun, Moye Chen

https://doi.org/10.7717/peerj.15268 PubMed 37214095

May 15, 2023

Antibiotic use in infants within the first year of life is associated with the appearance of antibiotic-resistant genes in their feces

Tolulope Elizabeth Fadeyi, Omolanke Temitope Oyedemi, Olushina Olawale Awe, Funmilola Ayeni