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January 2021

Table of Contents - PeerJ (Biology Articles)

January 15, 2021

Effective ribosomal RNA depletion for single-cell total RNA-seq by scDASH

Danson S.C. Loi, Lei Yu, Angela R. Wu

https://doi.org/10.7717/peerj.10717 PubMed 33520469

January 19, 2021

Identification of hub genes and biological pathways in hepatocellular carcinoma by integrated bioinformatics analysis

Qian Zhao, Yan Zhang, Shichun Shao, Yeqing Sun, Zhengkui Lin

https://doi.org/10.7717/peerj.10594 PubMed 33552715

January 19, 2021

Genome-wide analysis of growth-regulating factors (GRFs) in Triticum aestivum

Wendi Huang, Yiqin He, Lei Yang, Chen Lu, Yongxing Zhu, Cai Sun, Dongfang Ma, Junliang Yin

https://doi.org/10.7717/peerj.10701 PubMed 33552727

January 15, 2021

Overexpressed PLAU and its potential prognostic value in head and neck squamous cell carcinoma

Zhexuan Li, Changhan Chen, Juncheng Wang, Ming Wei, Guancheng Liu, Yuexiang Qin, Li She, Yong Liu, Donghai Huang, Yongquan Tian, Gangcai Zhu, Xin Zhang

https://doi.org/10.7717/peerj.10746 PubMed 33520474

January 19, 2021

Physical activity modulates mononuclear phagocytes in mammary tissue and inhibits tumor growth in mice

Donald M. Lamkin, Karen P. Bradshaw, Janice Chang, Ma’ayan Epstein, Jack Gomberg, Krupa P. Prajapati, Veronica H. Soliman, Thezia Sylviana, Yinnie Wong, Kouki Morizono, Erica K. Sloan, Steve W. Cole

https://doi.org/10.7717/peerj.10725 PubMed 33552733

January 6, 2021

Biochemical characterization and inhibition of thermolabile hemolysin from Vibrio parahaemolyticus by phenolic compounds

Luis E. Vazquez-Morado, Ramon E. Robles-Zepeda, Adrian Ochoa-Leyva, Aldo A. Arvizu-Flores, Adriana Garibay-Escobar, Francisco Castillo-Yañez, Alonso A. Lopez-zavala

https://doi.org/10.7717/peerj.10506 PubMed 33505784

January 14, 2021

Tumor microenvironment related novel signature predict lung adenocarcinoma survival

Juan Chen, Rui Zhou

https://doi.org/10.7717/peerj.10628 PubMed 33520448

January 15, 2021

Gene signatures with predictive and prognostic survival values in human osteosarcoma

Zhongpeng Qiu, Xinhui Du, Kai Chen, Yi Dai, Sibo Wang, Jun Xiao, Gang Li

https://doi.org/10.7717/peerj.10633 PubMed 33520450

January 8, 2021

Construction and validation of a novel prognostic signature of microRNAs in lung adenocarcinoma

Wanzhen Li, Shiqing Liu, Shihong Su, Yang Chen, Gengyun Sun

https://doi.org/10.7717/peerj.10470 PubMed 33510968

January 14, 2021

A SMRT approach for targeted amplicon sequencing of museum specimens (Lepidoptera)—patterns of nucleotide misincorporation

Jacopo D’Ercole, Sean W.J. Prosser, Paul D.N. Hebert

https://doi.org/10.7717/peerj.10420 PubMed 33520432

January 13, 2021

Digital Cell Sorter (DCS): a cell type identification, anomaly detection, and Hopfield landscapes toolkit for single-cell transcriptomics

Sergii Domanskyi, Alex Hakansson, Thomas J. Bertus, Giovanni Paternostro, Carlo Piermarocchi

https://doi.org/10.7717/peerj.10670 PubMed 33520459

January 15, 2021

RNA sequencing analysis of FGF2-responsive transcriptome in skin fibroblasts

Baojin Wu, Xinjie Tang, Zhaoping Zhou, Honglin Ke, Shao Tang, Ronghu Ke

https://doi.org/10.7717/peerj.10671 PubMed 33520460

January 13, 2021

Identification and analysis of lncRNA, microRNA and mRNA expression profiles and construction of ceRNA network in Talaromyces marneffei-infected THP-1 macrophage

Yueqi Li, Wudi Wei, Sanqi An, Junjun Jiang, Jinhao He, Hong Zhang, Gang Wang, Jing Han, Bingyu Liang, Li Ye, Hao Liang

https://doi.org/10.7717/peerj.10529 PubMed 33520437

January 20, 2021

Identification of an immune prognostic 11-gene signature for lung adenocarcinoma

Tao Yang, Lizheng Hao, Renyun Cui, Huanyu Liu, Jian Chen, Jiongjun An, Shuo Qi, Zhong Li

https://doi.org/10.7717/peerj.10749 PubMed 33552736

January 5, 2021

Bacterial meta-analysis of chicken cecal microbiota

Luis Alberto Chica Cardenas, Viviana Clavijo, Martha Vives, Alejandro Reyes

https://doi.org/10.7717/peerj.10571 PubMed 33505795

January 22, 2021

Genome-wide identification, evolution, and expression of the SNARE gene family in wheat resistance to powdery mildew

Guanghao Wang, Deyu Long, Fagang Yu, Hong Zhang, Chunhuan Chen, Yajuan Wang, Wanquan Ji

https://doi.org/10.7717/peerj.10788 PubMed 33552743

January 5, 2021

In situ dissecting the evolution of gene duplication with different histone modification patterns based on high-throughput data analysis in Arabidopsis thaliana

Jingjing Wang, Yuriy L. Orlov, Xue Li, Yincong Zhou, Yongjing Liu, Chunhui Yuan, Ming Chen

https://doi.org/10.7717/peerj.10426 PubMed 33505781

January 18, 2021

Analysis of codon usage patterns of the chloroplast genome in Delphinium grandiflorum L. reveals a preference for AT-ending codons as a result of major selection constraints

Huirong Duan, Qian Zhang, Chunmei Wang, Fang Li, Fuping Tian, Yuan Lu, Yu Hu, Hongshan Yang, Guangxin Cui

https://doi.org/10.7717/peerj.10787 PubMed 33552742

January 11, 2021

SMARTAR: an R package for designing and analyzing Sequential Multiple Assignment Randomized Trials

Xiaobo Zhong, Bin Cheng, Xinru Wang, Ying Kuen Cheung

https://doi.org/10.7717/peerj.10559 PubMed 33510969

January 15, 2021

High expression of MAPK-14 promoting the death of chondrocytes is an important signal of osteoarthritis process

Zhiqin Deng, Xiaotian Hu, Murad Alahdal, Jianquan Liu, Zhe Zhao, Xiaoqiang Chen, Junxiong Xie, Li Duan, Daping Wang, Wencui Li

https://doi.org/10.7717/peerj.10656 PubMed 33520453

January 18, 2021

Genome-wide identification, evolution, expression, and alternative splicing profiles of peroxiredoxin genes in cotton

Yulong Feng, Renhui Wei, Aiying Liu, Senmiao Fan, JinCan Che, Zhen Zhang, Baoming Tian, Youlu Yuan, Gongyao Shi, Haihong Shang

https://doi.org/10.7717/peerj.10685 PubMed 33552724

January 4, 2021

Analysis of synonymous codon usage of transcriptome database in Rheum palmatum

Xiaowei Huo, Sisi Liu, Yimin Li, Hao Wei, Jing Gao, Yonggang Yan, Gang Zhang, Mengmeng Liu

https://doi.org/10.7717/peerj.10450 PubMed 33505783

January 6, 2021

A novel similarity score based on gene ranks to reveal genetic relationships among diseases

Dongmei Luo, Chengdong Zhang, Liwan Fu, Yuening Zhang, Yue-Qing Hu

https://doi.org/10.7717/peerj.10576 PubMed 33505797

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