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July 2020

Table of Contents - PeerJ (Biology Articles)

July 27, 2020

Epitope-based chimeric peptide vaccine design against S, M and E proteins of SARS-CoV-2, the etiologic agent of COVID-19 pandemic: an in silico approach

M. Shaminur Rahman, M. Nazmul Hoque, M. Rafiul Islam, Salma Akter, A. S. M. Rubayet Ul Alam, Mohammad Anwar Siddique, Otun Saha, Md. Mizanur Rahaman, Munawar Sultana, Keith A. Crandall, M. Anwar Hossain

https://doi.org/10.7717/peerj.9572 PubMed 33194329

July 29, 2020

Altered gut microbiota associated with symptom severity in schizophrenia

Shijia Li, Min Zhuo, Xia Huang, Yuanyuan Huang, Jing Zhou, Dongsheng Xiong, Jiahui Li, Ya Liu, Zhilin Pan, Hehua Li, Jun Chen, Xiaobo Li, Zhiming Xiang, Fengchun Wu, Kai Wu

https://doi.org/10.7717/peerj.9574 PubMed 32821537

July 3, 2020

Identification of novel mutations in RNA-dependent RNA polymerases of SARS-CoV-2 and their implications on its protein structure

Gyanendra Bahadur Chand, Atanu Banerjee, Gajendra Kumar Azad

https://doi.org/10.7717/peerj.9492 PubMed 32685291

July 29, 2020

Metagenomic next-generation sequencing for the clinical diagnosis and prognosis of acute respiratory distress syndrome caused by severe pneumonia: a retrospective study

Peng Zhang, Yan Chen, Shuyun Li, Chaoliang Li, Shuang Zhang, Weihao Zheng, Yantang Chen, Jie Ma, Xin Zhang, Yanming Huang, Shengming Liu

https://doi.org/10.7717/peerj.9623 PubMed 32821543

July 10, 2020

Arthropod IGF, relaxin and gonadulin, putative orthologs of Drosophila insulin-like peptides 6, 7 and 8, likely originated from an ancient gene triplication

Jan A. Veenstra

https://doi.org/10.7717/peerj.9534 PubMed 32728497

July 28, 2020

Differential expression between drought-tolerant and drought-sensitive sugarcane under mild and moderate water stress as revealed by a comparative analysis of leaf transcriptome

Wanapinun Nawae, Jeremy R. Shearman, Sithichoke Tangphatsornruang, Prapat Punpee, Thippawan Yoocha, Duangjai Sangsrakru, Chaiwat Naktang, Chutima Sonthirod, Warodom Wirojsirasak, Kittipat Ukoskit, Klanarong Sriroth, Peeraya Klomsa-ard, Wirulda Pootakham

https://doi.org/10.7717/peerj.9608 PubMed 33240580

July 8, 2020

Very few sites can reshape the inferred phylogenetic tree

Warren R. Francis, Donald E. Canfield

https://doi.org/10.7717/peerj.8865 PubMed 32714649

July 23, 2020

Analysis of prognostic genes in the tumor microenvironment of lung adenocarcinoma

Zhan-yu Xu, Mengli Zhao, Wenjie Chen, Kun Li, Fanglu Qin, Wei-wei Xiang, Yu Sun, Jiangbo Wei, Li-qiang Yuan, Shi-kang Li, Sheng-hua Lin

https://doi.org/10.7717/peerj.9530 PubMed 32775050

July 17, 2020

Understanding genomic diversity, pan-genome, and evolution of SARS-CoV-2

Arohi Parlikar, Kishan Kalia, Shruti Sinha, Sucheta Patnaik, Neeraj Sharma, Sai Gayatri Vemuri, Gaurav Sharma

https://doi.org/10.7717/peerj.9576 PubMed 32742815

July 22, 2020

An overview of biomass conversion: exploring new opportunities

László Fülöp, János Ecker

https://doi.org/10.7717/peerj.9586 PubMed 32765969

July 17, 2020

Genome-wide identification and expression profiles of ERF subfamily transcription factors in Zea mays

Lidong Hao, Shubing Shi, Haibin Guo, Ming Li, Pan Hu, Yadong Wei, Yanfei Feng

https://doi.org/10.7717/peerj.9551 PubMed 32742811

July 28, 2020

Excessive G–U transversions in novel allele variants in SARS-CoV-2 genomes

Alexander Y. Panchin, Yuri V. Panchin

https://doi.org/10.7717/peerj.9648 PubMed 33194341

July 16, 2020

Subcellular compartmentalization of the plant antioxidant system: an integrated overview

Aleksandr Bobrovskikh, Ulyana Zubairova, Alexey Kolodkin, Alexey Doroshkov

https://doi.org/10.7717/peerj.9451 PubMed 32742779

July 9, 2020

Identifying hub genes of papillary thyroid carcinoma in the TCGA and GEO database using bioinformatics analysis

Ying Wan, Xiaolian Zhang, Huilin Leng, Weihua Yin, Wenxing Zeng, Congling Zhang

https://doi.org/10.7717/peerj.9120 PubMed 32714651

July 7, 2020

Molecular, physiological, and biochemical characterization of extracellular lipase production by Aspergillus niger using submerged fermentation

Amira Hassan Alabdalall, Norah Ayad ALanazi, Sumayh A. Aldakeel, Sayed AbdulAzeez, J. Francis Borgio

https://doi.org/10.7717/peerj.9425 PubMed 32704444

July 30, 2020

Gluconobacter dominates the gut microbiome of the Asian palm civet Paradoxurus hermaphroditus that produces kopi luwak

Hikaru Watanabe, Chong Han Ng, Vachiranee Limviphuvadh, Shinya Suzuki, Takuji Yamada

https://doi.org/10.7717/peerj.9579 PubMed 32821539

July 30, 2020

Genome‐wide identification of CpG island methylator phenotype related gene signature as a novel prognostic biomarker of gastric cancer

Zhuo Zeng, Daxing Xie, Jianping Gong

https://doi.org/10.7717/peerj.9624 PubMed 32821544

July 13, 2020

Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition

Shanshan Zhu, Yuhe Zhu, Zhenbo Wang, Chen Liang, Nanjue Cao, Ming Yan, Fei Gao, Jie Liu, Wei Wang

https://doi.org/10.7717/peerj.9292 PubMed 32742764

July 21, 2020

Prediction of human fetal–maternal blood concentration ratio of chemicals

Chia-Chi Wang, Pinpin Lin, Che-Yu Chou, Shan-Shan Wang, Chun-Wei Tung

https://doi.org/10.7717/peerj.9562 PubMed 32742813

July 28, 2020

Identification of 10 Hub genes related to the progression of colorectal cancer by co-expression analysis

Jie Meng, Rui Su, Yun Liao, Yanyan Li, Ling Li

https://doi.org/10.7717/peerj.9633 PubMed 33240582

July 27, 2020

Identification and validation of prognostic signature for breast cancer based on genes potentially involved in autophagy

Shanliang Zhong, Huanwen Chen, Sujin Yang, Jifeng Feng, Siying Zhou

https://doi.org/10.7717/peerj.9621 PubMed 33194339

July 28, 2020

Proteomic analysis of human cervical adenocarcinoma mucus to identify potential protein biomarkers

Zhifang Ma, Jie Chen, Ting Luan, Chengzhuo Chu, Wangfei Wu, Yichao Zhu, Yun Gu

https://doi.org/10.7717/peerj.9527 PubMed 33194326

July 3, 2020

Genome-wide analysis of basic helix-loop-helix transcription factors in papaya (Carica papaya L.)

Min Yang, Chenping Zhou, Hu Yang, Ruibin Kuang, Bingxiong Huang, Yuerong Wei

https://doi.org/10.7717/peerj.9319 PubMed 32704439

July 16, 2020

Diagnostic and prognostic values of upregulated SPC25 in patients with hepatocellular carcinoma

Xiaolin Yang, Hongzhi Sun, Ying Song, Li Yang, Haibo Liu

https://doi.org/10.7717/peerj.9535 PubMed 32742802

July 6, 2020

Novel circulating protein biomarkers for thyroid cancer determined through data-independent acquisition mass spectrometry

Dandan Li, Jie Wu, Zhongjuan Liu, Ling Qiu, Yimin Zhang

https://doi.org/10.7717/peerj.9507 PubMed 32704452

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