Biology & Life sciences - Table of Contents

October 11, 2019

Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)

Travis C. Glenn, Roger A. Nilsen, Troy J. Kieran, Jon G. Sanders, Natalia J. Bayona-Vásquez, John W. Finger, Todd W. Pierson, Kerin E. Bentley, Sandra L. Hoffberg, Swarnali Louha, Francisco J. Garcia-De Leon, Miguel Angel del Rio Portilla, Kurt D. Reed, Jennifer L. Anderson, Jennifer K. Meece, Samuel E. Aggrey, Romdhane Rekaya, Magdy Alabady, Myriam Belanger, Kevin Winker, Brant C. Faircloth

https://doi.org/10.7717/peerj.7755 PubMed 31616586

October 11, 2019

Adapterama III: Quadruple-indexed, double/triple-enzyme RADseq libraries (2RAD/3RAD)

Natalia J. Bayona-Vásquez, Travis C. Glenn, Troy J. Kieran, Todd W. Pierson, Sandra L. Hoffberg, Peter A. Scott, Kerin E. Bentley, John W. Finger, Swarnali Louha, Nicholas Troendle, Pindaro Diaz-Jaimes, Rodney Mauricio, Brant C. Faircloth

https://doi.org/10.7717/peerj.7724 PubMed 31616583

October 8, 2019

Identification of crucial genes in abdominal aortic aneurysm by WGCNA

Siliang Chen, Dan Yang, Chuxiang Lei, Yuan Li, Xiaoning Sun, Mengyin Chen, Xiao Wu, Yuehong Zheng

https://doi.org/10.7717/peerj.7873 PubMed 31608184

October 11, 2019

Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix)

Travis C. Glenn, Todd W. Pierson, Natalia J. Bayona-Vásquez, Troy J. Kieran, Sandra L. Hoffberg, Jesse C. Thomas IV, Daniel E. Lefever, John W. Finger, Bei Gao, Xiaoming Bian, Swarnali Louha, Ramya T. Kolli, Kerin E. Bentley, Julie Rushmore, Kelvin Wong, Timothy I. Shaw, Michael J. Rothrock Jr, Anna M. McKee, Tai L. Guo, Rodney Mauricio, Marirosa Molina, Brian S. Cummings, Lawrence H. Lash, Kun Lu, Gregory S. Gilbert, Stephen P. Hubbell, Brant C. Faircloth

https://doi.org/10.7717/peerj.7786 PubMed 31616589

October 16, 2019

The bZIP gene family in watermelon: genome-wide identification and expression analysis under cold stress and root-knot nematode infection

Youxin Yang, Jingwen Li, Hao Li, Yingui Yang, Yelan Guang, Yong Zhou

https://doi.org/10.7717/peerj.7878 PubMed 31637131

October 15, 2019

Downregulated miR-383-5p contributes to the proliferation and migration of gastric cancer cells and is associated with poor prognosis

Chao Wei, Jian-Jun Gao

https://doi.org/10.7717/peerj.7882 PubMed 31637133

October 4, 2019

The clinical significance of collagen family gene expression in esophageal squamous cell carcinoma

Jieling Li, Xiao Wang, Kai Zheng, Ying Liu, Junjun Li, Shaoqi Wang, Kaisheng Liu, Xun Song, Nan Li, Shouxia Xie, Shaoxiang Wang

https://doi.org/10.7717/peerj.7705 PubMed 31598423

October 14, 2019

Genome-wide identification and expression analysis of the WRKY genes in sugar beet (Beta vulgaris L.) under alkaline stress

Guo-Qiang Wu, Zhi-Qiang Li, Han Cao, Jin-Long Wang

https://doi.org/10.7717/peerj.7817 PubMed 31632850

October 7, 2019

Integrative transcriptome data mining for identification of core lncRNAs in breast cancer

Xiaoming Zhang, Jing Zhuang, Lijuan Liu, Zhengguo He, Cun Liu, Xiaoran Ma, Jie Li, Xia Ding, Changgang Sun

https://doi.org/10.7717/peerj.7821 PubMed 31608179

October 16, 2019

Full genome sequence analysis of a 1-7-4-like PRRSV strain in Fujian Province, China

Jiankui Liu, Chunhua Wei, Zhifeng Lin, Wei Xia, Ying Ma, Ailing Dai, Xiaoyan Yang

https://doi.org/10.7717/peerj.7859 PubMed 31637126

October 16, 2019

Transcriptome analysis of the induction of somatic embryogenesis in Coffea canephora and the participation of ARF and Aux/IAA genes

Ana O. Quintana-Escobar, Geovanny I. Nic-Can, Rosa María Galaz Avalos, Víctor M. Loyola-Vargas, Elsa Gongora-Castillo

https://doi.org/10.7717/peerj.7752 PubMed 31637116

October 7, 2019

Plastome sequences help to improve the systematic position of trinerved Lindera species in the family Lauraceae

Xiangyu Tian, Junwei Ye, Yu Song

https://doi.org/10.7717/peerj.7662 PubMed 31608166

October 25, 2019

Identification of hub genes and small-molecule compounds related to intracerebral hemorrhage with bioinformatics analysis

Zhendong Liu, Ruotian Zhang, Xin Chen, Penglei Yao, Tao Yan, Wenwu Liu, Jiawei Yao, Andrei Sokhatskii, Ilgiz Gareev, Shiguang Zhao

https://doi.org/10.7717/peerj.7782 PubMed 31667013

October 29, 2019

T1000: a reduced gene set prioritized for toxicogenomic studies

Othman Soufan, Jessica Ewald, Charles Viau, Doug Crump, Markus Hecker, Niladri Basu, Jianguo Xia

https://doi.org/10.7717/peerj.7975 PubMed 31681519

October 31, 2019

Identification of key genes and pathways associated with cholangiocarcinoma development based on weighted gene correlation network analysis

Jingwei Liu, Weixin Liu, Hao Li, Qiuping Deng, Meiqi Yang, Xuemei Li, Zeng Liang

https://doi.org/10.7717/peerj.7968 PubMed 31687280

October 4, 2019

Different expression pattern of flowering pathway genes contribute to male or female organ development during floral transition in the monoecious weed Ambrosia artemisiifolia L. (Asteraceae)

Kinga Klára Mátyás, Géza Hegedűs, János Taller, Eszter Farkas, Kincső Decsi, Barbara Kutasy, Nikoletta Kálmán, Erzsébet Nagy, Balázs Kolics, Eszter Virág

https://doi.org/10.7717/peerj.7421 PubMed 31598422

October 2, 2019

Increased expression of RUNX1 in clear cell renal cell carcinoma predicts poor prognosis

Yang Fu, Shanshan Sun, Xiaojun Man, Chuize Kong

https://doi.org/10.7717/peerj.7854 PubMed 31592165

October 7, 2019

CELSR3 mRNA expression is increased in hepatocellular carcinoma and indicates poor prognosis

Xuefeng Gu, Hongbo Li, Ling Sha, Yuan Mao, Chuanbing Shi, Wei Zhao

https://doi.org/10.7717/peerj.7816 PubMed 31608178

October 4, 2019

Identification of potential biomarkers and pivotal biological pathways for prostate cancer using bioinformatics analysis methods

Zihao He, Xiaolu Duan, Guohua Zeng