A preliminary study of the effect of a high-salt diet on transcriptome dynamics in rat hypothalamic forebrain and brainstem cardiovascular control centers

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Biochemistry, Biophysics and Molecular Biology

Main article text

 

Introduction

Materials and Methods

Animals and animal care

Grouping and experimental design

Tissue collection and preparation

RNA extraction and quality assessment

RNA-Sequencing analysis

Quantitative reverse transcription polymerase chain reaction (qRT-PCR)

Statistical analysis

Results

RNA-Seq analyses of SFO, SON, PVN, NTS and RVLM of WKY rats and SHRs fed with RS and HS diets

qRT-PCR validations of selected genes

Discussion

General consideration

RNA-Seq analysis and qRT-PCR validation

Subfornical organ (SFO)

Supraoptic nucleus (SON)

Paraventricular nucleus (PVN)

Nucleus tractus solitarii (NTS)

Rostral ventrolateral medulla (RVLM)

Conclusions

Supplemental Information

RNA-Seq datasets for SFO

DOI: 10.7717/peerj.8528/supp-2

RNA-Seq datasets for SON

DOI: 10.7717/peerj.8528/supp-3

RNA-Seq datasets for PVN

DOI: 10.7717/peerj.8528/supp-4

RNA-Seq datasets for NTS

DOI: 10.7717/peerj.8528/supp-5

RNA-Seq datasets for RVLM

DOI: 10.7717/peerj.8528/supp-6

qPCR Raw data: SFO

DOI: 10.7717/peerj.8528/supp-7

qPCR Raw Data: SON

DOI: 10.7717/peerj.8528/supp-8

qPCR Raw Data: PVN

DOI: 10.7717/peerj.8528/supp-9

qPCR Raw Data: NTS

DOI: 10.7717/peerj.8528/supp-10

qPCR Raw Data: RVLM

DOI: 10.7717/peerj.8528/supp-11

Additional Information and Declarations

Competing Interests

The authors declare there are no competing interests.

Author Contributions

Chitra Devi Ramachandran conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the paper, and approved the final draft.

Khadijeh Gholami and See Ziau Hoe conceived and designed the experiments, authored or reviewed drafts of the paper, and approved the final draft.

Sau Kuen Lam conceived and designed the experiments, authored or reviewed drafts of the paper, review & suggestion, and approved the final draft.

Animal Ethics

The following information was supplied relating to ethical approvals (i.e., approving body and any reference numbers):

All the experimental protocols involving animals and housing thereof were reviewed and approved by the Institutional Animal Care and Use Committee (IACUC) of the University of Malaya (Reference: 2014-01-07/Physio/R/HSZ)

Data Availability

The following information was supplied regarding data availability:

The raw data is available at EBI: PRJEB35016.

Funding

This study was funded by High Impact Research Chancellery Grant- UM.C/625/1/HIR/MOHE/MED/22H-20001-E000086 by Ministry of Higher Education, Malaysia and Postgraduate Research Fund (PG274-2016A) from University of Malaya. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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