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Min Zhao
PeerJ Editor, Author & Reviewer
3,400 Points

Contributions by role

Author 705
Preprint Author 35
Reviewer 15
Editor 2,645

Contributions by subject area

Bioinformatics
Genomics
Oncology
Women's Health
Medical Genetics
Agricultural Science
Genetics
Marine Biology
Molecular Biology
Hematology
Pediatrics
Computational Biology
Cell Biology
Microbiology
Taxonomy
Gastroenterology and Hepatology
Data Mining and Machine Learning
Histology
Artificial Intelligence
Visual Analytics
Infectious Diseases
Public Health
Respiratory Medicine
Urology
Dentistry
Neurology
Veterinary Medicine
Translational Medicine
Statistics
Conservation Biology
Aquaculture, Fisheries and Fish Science
Data Science
Developmental Biology
Gynecology and Obstetrics
Clinical Trials
Drugs and Devices

Min Zhao

PeerJ Editor, Author & Reviewer

Summary

I pursued my bioinformatics Ph.D. degree in the center of bioinformatics in Peking University. During my Ph.D. study, I received comprehensive training in molecular biology, biostatistics and bioinformatics including research designs, computational tool development and database implementation. With a solid background and comprehensive knowledge in bioinformatics and biological networks, I filled a postdoctoral research fellow position at the Vanderbilt University. During this period, I received excellent training in the understanding of genetics of complex diseases including cancer and pulmonary disease, and I applied my bioinformatics skills in analysis of large scale next-generation sequencing (NGS) data.

To date, I have worked in four different research areas. The first is data collection from public literature and databases to build bioinformatics tools for public use. The second is the integrative analysis of NGS data to decipher the genetic mechanism of complex disease. Thirdly, I applied network-based strategy on the interplay of tumor suppressor genes (TSGs) and oncogenes (OCGs) using the public cancer genomic/epigenetic data. Lastly, I translated my disease genomics expertise to huge marine genomic data to explore the common cell-cell communication mechanisms of metazoan.

Bioinformatics Genomics Oncology

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

University of the Sunshine Coast

Work details

Research fellow

University of Sunshine Coast
Faculty of Science, Health, Education and Engineering

Websites

  • Google Scholar

PeerJ Contributions

  • Articles 7
  • Preprints 1
  • Edited 22
December 1, 2023
Identification of cytokine-induced cell communications by pan-cancer meta-analysis
Yining Liu, Min Zhao, Hong Qu
https://doi.org/10.7717/peerj.16221 PubMed 38054018
August 21, 2023
Crown-of-thorns starfish spines secrete defence proteins
Adam K. Hillberg, Meaghan K. Smith, Blake S. Lausen, Saowaros Suwansa-ard, Ryan Johnston, Shahida A. Mitu, Leah E. MacDonald, Min Zhao, Cherie A. Motti, Tianfang Wang, Abigail Elizur, Keisuke Nakashima, Noriyuki Satoh, Scott F. Cummins
https://doi.org/10.7717/peerj.15689 PubMed 37637177
July 14, 2021
Identification of consistent post-translational regulatory triplets related to oncogenic and tumour suppressive modulators in childhood acute lymphoblastic leukemia
YongKiat Wee, Yining Liu, Min Zhao
https://doi.org/10.7717/peerj.11803 PubMed 34316412
December 20, 2019
Genetic links between endometriosis and cancers in women
Salma Begum Bhyan, Li Zhao, YongKiat Wee, Yining Liu, Min Zhao
https://doi.org/10.7717/peerj.8135 PubMed 31879572
June 6, 2019
Integrative analysis of common genes and driver mutations implicated in hormone stimulation for four cancers in women
Salma Begum Bhyan, YongKiat Wee, Yining Liu, Scott Cummins, Min Zhao
https://doi.org/10.7717/peerj.6872 PubMed 31205821
December 4, 2017
Constructing a comprehensive gene co-expression based interactome in Bos taurus
Yan Chen, Yining Liu, Min Du, Wengang Zhang, Ling Xu, Xue Gao, Lupei Zhang, Huijiang Gao, Lingyang Xu, Junya Li, Min Zhao
https://doi.org/10.7717/peerj.4107 PubMed 29226034
July 17, 2017
Mutational analysis of driver genes with tumor suppressive and oncogenic roles in gastric cancer
Tianfang Wang, Yining Liu, Min Zhao
https://doi.org/10.7717/peerj.3585 PubMed 28729958
August 22, 2017 - Version: 1
Construction the first gene co-expression-based interactome in cattle
Yan Chen, Yining Liu, Min Du, Wengang Zhang, Xue Gao, Lupei Zhang, Huijiang Gao, Lingyang Xu, Junya Li, Min Zhao
https://doi.org/10.7287/peerj.preprints.3178v1

Academic Editor on

September 20, 2024
Development and validation of a mitotic catastrophe-related genes prognostic model for breast cancer
Shuai Wang, Haoyi Zi, Mengxuan Li, Jing Kong, Cong Fan, Yujie Bai, Jianing Sun, Ting Wang
https://doi.org/10.7717/peerj.18075 PubMed 39314848
April 25, 2023
CINmetrics: an R package for analyzing copy number aberrations as a measure of chromosomal instability
Vishal H. Oza, Jennifer L. Fisher, Roshan Darji, Brittany N. Lasseigne
https://doi.org/10.7717/peerj.15244 PubMed 37123011
April 14, 2022
ELOVL2-AS1 inhibits migration of triple negative breast cancer
Mingda Zhu, Jingyang Zhang, Guangyu Li, Zhenzhen Liu
https://doi.org/10.7717/peerj.13264 PubMed 35441059
February 22, 2022
Functional network motifs defined through integration of protein-protein and genetic interactions
Amruta Sahoo, Sebastian Pechmann
https://doi.org/10.7717/peerj.13016 PubMed 35223214
September 3, 2021
Clinicopathological value of long non-coding RNA profiles in gastrointestinal stromal tumor
Yan Zhao, Xinxin Liu, Keshuai Xiao, Liwen Wang, Yuping Li, Mingyun Kan, Zhiwei Jiang
https://doi.org/10.7717/peerj.11946 PubMed 34557343
March 19, 2021
Network based multifactorial modelling of miRNA-target interactions
Selcen Ari Yuka, Alper Yilmaz
https://doi.org/10.7717/peerj.11121 PubMed 33777541
November 4, 2020
Identification of the miRNA-mRNA regulatory pathways and a miR-21-5p based nomogram model in clear cell renal cell carcinoma
Yiqiao Zhao, Zijia Tao, Xiaonan Chen
https://doi.org/10.7717/peerj.10292 PubMed 33194441
January 28, 2020
Loss of Schlafen3 influences the expression levels of Schlafen family members in ileum, thymus, and spleen tissue
Emilie E. Vomhof-DeKrey, Josey Umthun, Marc D. Basson
https://doi.org/10.7717/peerj.8461 PubMed 32025381
October 31, 2019
High expression of HSP90 is associated with poor prognosis in patients with colorectal cancer
Shuming Zhang, Shichao Guo, Zhangfu Li, Dan Li, Qimin Zhan
https://doi.org/10.7717/peerj.7946 PubMed 31687275
May 23, 2019
Transcriptomic study of the mechanism of anoikis resistance in head and neck squamous carcinoma
Chen Guo, Ling-feng Xu, Hui-min Li, Wei Wang, Ji-hua Guo, Meng-qi Jia, Rong Jia, Jun Jia
https://doi.org/10.7717/peerj.6978 PubMed 31198634
July 17, 2018
Integrated analysis of differentially expressed profiles and construction of a competing endogenous long non-coding RNA network in renal cell carcinoma
Qianwei Xing, Yeqing Huang, You Wu, Limin Ma, Bo Cai
https://doi.org/10.7717/peerj.5124 PubMed 30038853
July 16, 2018
Time series clustering of mRNA and lncRNA expression during osteogenic differentiation of periodontal ligament stem cells
Yunfei Zheng, Xiaobei Li, Yiping Huang, Lingfei Jia, Weiran Li
https://doi.org/10.7717/peerj.5214 PubMed 30038865
November 17, 2017
A 16-gene signature predicting prognosis of patients with oral tongue squamous cell carcinoma
Zeting Qiu, Wei Sun, Shaowei Gao, Huaqiang Zhou, Wulin Tan, Minghui Cao, Wenqi Huang
https://doi.org/10.7717/peerj.4062 PubMed 29158988
November 6, 2017
Transcriptome dynamics along axolotl regenerative development are consistent with an extensive reduction in gene expression heterogeneity in dedifferentiated cells
Carlos Díaz-Castillo
https://doi.org/10.7717/peerj.4004 PubMed 29134148
May 16, 2017
Radiosensitization effect of hsa-miR-138-2-3p on human laryngeal cancer stem cells
Ying Zhu, Li-Yun Shi, Yan-Min Lei, Yan-Hong Bao, Zhao-Yang Li, Fei Ding, Gui-Ting Zhu, Qing-Qing Wang, Chang-Xin Huang
https://doi.org/10.7717/peerj.3233 PubMed 28533948
August 9, 2016
A comparison of blood gases, biochemistry, and hematology to ecomorphology in a health assessment of pinfish (Lagodon rhomboides)
Sara Collins, Alex Dornburg, Joseph M. Flores, Daniel S. Dombrowski, Gregory A. Lewbart
https://doi.org/10.7717/peerj.2262 PubMed 27602261
July 19, 2016
Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria
Edward W. Davis II, Alexandra J. Weisberg, Javier F. Tabima, Niklaus J. Grunwald, Jeff H. Chang
https://doi.org/10.7717/peerj.2222 PubMed 27547538
June 15, 2016
Integrated microRNA, gene expression and transcription factors signature in papillary thyroid cancer with lymph node metastasis
Nurul-Syakima Ab Mutalib, Sri Noraima Othman, Azliana Mohamad Yusof, Shahrun Niza Abdullah Suhaimi, Rohaizak Muhammad, Rahman Jamal
https://doi.org/10.7717/peerj.2119 PubMed 27350898
January 19, 2016
Low regeneration of lesions produced by coring in Orbicella faveolata
Rosa E. Rodríguez-Martínez, Adán Guillermo Jordán-Garza, Eric Jordán-Dahlgren
https://doi.org/10.7717/peerj.1596 PubMed 27004146
January 4, 2016
Reproducibility of SNV-calling in multiple sequencing runs from single tumors
Dakota Z. Derryberry, Matthew C. Cowperthwaite, Claus O. Wilke
https://doi.org/10.7717/peerj.1508 PubMed 26855855
November 26, 2015
The effectiveness of sputum pH analysis in the prediction of response to therapy in patients with pulmonary tuberculosis
Makoto Masuda, Takashi Sato, Kentaro Sakamaki, Makoto Kudo, Takeshi Kaneko, Yoshiaki Ishigatsubo
https://doi.org/10.7717/peerj.1448 PubMed 26644982
October 14, 2015
Application of Graph Theory to the elaboration of personal genomic data for genealogical research
Vincenzo Palleschi, Luca Pagani, Stefano Pagnotta, Giuseppe Amato, Sergio Tofanelli
https://doi.org/10.7717/peerj-cs.27