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Construction the first gene co-expression-based interactome in cattle

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Construction the first gene co-expression-based interactome in cattle https://t.co/O04JTtDzAO Integrating genomic information int…
91 days ago
Construction the first gene co-expression-based interactome in cattle https://t.co/uJ034iaFOs
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Supplemental Information

Table S1. The expression profile for the top 5,000 most variant genes across 92 tissue samples

DOI: 10.7287/peerj.preprints.3178v1/supp-1

Table S2. The top five gene modules with most genes in WGCNA analysis

DOI: 10.7287/peerj.preprints.3178v1/supp-2

Table S3. The eigengenes for the gene modules from WGCNA analysis

DOI: 10.7287/peerj.preprints.3178v1/supp-3

Table S4. The number of connections for all the genes in the co-expression network from WGCNA

DOI: 10.7287/peerj.preprints.3178v1/supp-4

Table S5. The gene related to DNA binding in cattle

DOI: 10.7287/peerj.preprints.3178v1/supp-5

Table S6. The gene types for the extracted sub-network related to DNA binding

DOI: 10.7287/peerj.preprints.3178v1/supp-6

Additional Information

Competing Interests

Dr. Min Zhao is an Academic Editor for PeerJ.

Author Contributions

Yan Chen conceived and designed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Yining Liu conceived and designed the experiments, analyzed the data, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Min Du conceived and designed the experiments, reviewed drafts of the paper.

Wengang Zhang performed the experiments, prepared figures and/or tables, reviewed drafts of the paper.

Xue Gao performed the experiments, reviewed drafts of the paper.

Lupei Zhang performed the experiments, reviewed drafts of the paper.

Huijiang Gao analyzed the data, reviewed drafts of the paper.

Lingyang Xu analyzed the data, reviewed drafts of the paper.

Junya Li conceived and designed the experiments, contributed reagents/materials/analysis tools, wrote the paper, reviewed drafts of the paper.

Min Zhao conceived and designed the experiments, analyzed the data, contributed reagents/materials/analysis tools, wrote the paper, prepared figures and/or tables, reviewed drafts of the paper.

Data Deposition

The following information was supplied regarding data availability:

The research in this article did not generate any data or code (gene expression data was obtained from bovine genome database). Additionally, all the data used in this study was shared in our supplementary tables.

Funding

This work was supported by National Natural Science Foundation of China (31402039), the start-up grant to Dr. Min Zhao, China Scholarship Council (CSC), Cattle Breeding Innovative Research Team of Chinese Academy of Agricultural Sciences (cxgc-ias-03), and National Beef Cattle Industrial Technology System of China's Agriculture and Finance Ministries (CARS-37). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.


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