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Aaron Darling
PeerJ Author & Reviewer
1,670 Points

Contributions by role

Author 1,215
Preprint Author 245
Reviewer 210

Contributions by subject area

Bioinformatics
Genetics
Computational Science
Computational Biology
Data Mining and Machine Learning
Microbiology
Molecular Biology
Diabetes and Endocrinology
Genomics
Ecology
Biodiversity
Bioengineering
Evolutionary Studies
Science and Medical Education
Human-Computer Interaction
Data Science
Statistics
Infectious Diseases
Food Science and Technology
Public Health
Mathematical Biology

Aaron E Darling

PeerJ Author & Reviewer

Summary

Bioinformatics Computational Biology Evolutionary Studies Genomics Microbiology

Past or current institution affiliations

UC Davis
University of Technology Sydney

Work details

Associate Professor

University of Technology Sydney
The ithree institute

Websites

  • Google Scholar

PeerJ Contributions

  • Articles 9
  • Preprints 5
  • Reviewed 4
  • Answers 1
December 18, 2019
Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics
Mathieu Fourment, Aaron E. Darling
https://doi.org/10.7717/peerj.8272 PubMed 31976168
July 3, 2018
Local and relaxed clocks: the best of both worlds
Mathieu Fourment, Aaron E. Darling
https://doi.org/10.7717/peerj.5140 PubMed 30002973
September 19, 2017
Evaluation of ddRADseq for reduced representation metagenome sequencing
Michael Y. Liu, Paul Worden, Leigh G. Monahan, Matthew Z. DeMaere, Catherine M. Burke, Steven P. Djordjevic, Ian G. Charles, Aaron E. Darling
https://doi.org/10.7717/peerj.3837 PubMed 28948110
July 20, 2017
A longitudinal study of the diabetic skin and wound microbiome
Melissa Gardiner, Mauro Vicaretti, Jill Sparks, Sunaina Bansal, Stephen Bush, Michael Liu, Aaron Darling, Elizabeth Harry, Catherine M. Burke
https://doi.org/10.7717/peerj.3543 PubMed 28740749
November 8, 2016
Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)
Matthew Z. DeMaere, Aaron E. Darling
https://doi.org/10.7717/peerj.2676 PubMed 27843713
September 20, 2016
A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq
Catherine M. Burke, Aaron E. Darling
https://doi.org/10.7717/peerj.2492 PubMed 27688981
May 14, 2015
Swabs to genomes: a comprehensive workflow
Madison I. Dunitz, Jenna M. Lang, Guillaume Jospin, Aaron E. Darling, Jonathan A. Eisen, David A. Coil
https://doi.org/10.7717/peerj.960 PubMed 26020012
May 27, 2014
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
Christopher W. Beitel, Lutz Froenicke, Jenna M. Lang, Ian F. Korf, Richard W. Michelmore, Jonathan A. Eisen, Aaron E. Darling
https://doi.org/10.7717/peerj.415 PubMed 24918035
January 9, 2014
PhyloSift: phylogenetic analysis of genomes and metagenomes
Aaron E. Darling, Guillaume Jospin, Eric Lowe, Frederick A. Matsen, Holly M. Bik, Jonathan A. Eisen
https://doi.org/10.7717/peerj.243 PubMed 24482762
April 26, 2018 - Version: 1
Visualization of Biomedical Data
Seán I O'Donoghue, Benedetta F Baldi, Susan J Clark, Aaron E Darling, James M Hogan, Sandeep Kaur, Lena Maier-Hein, Davis J McCarthy, William J Moore, Esther Stenau, Jason R Swedlow, Jenny Vuong, James B Procter
https://doi.org/10.7287/peerj.preprints.26896v1
March 21, 2018 - Version: 1
Local and relaxed clocks, the best of both worlds
Mathieu Fourment, Aaron E Darling
https://doi.org/10.7287/peerj.preprints.26744v1
May 13, 2016 - Version: 2
Deconvoluting simulated metagenomes: the performance of hard- and soft- clustering algorithms applied to metagenomic chromosome conformation capture (3C)
Matthew Z DeMaere, Aaron E Darling
https://doi.org/10.7287/peerj.preprints.1974v2
January 29, 2015 - Version: 2
Swabs to genomes: a comprehensive workflow
Madison I Dunitz, Jenna M Lang, Guillaume Jospin, Aaron E Darling, Jonathan A Eisen, David A Coil
https://doi.org/10.7287/peerj.preprints.453v2
February 28, 2014 - Version: 1
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
Christopher W. Beitel, Lutz Froenicke, Jenna M. Lang, Ian F. Korf, Richard W. Michelmore, Jonathan A. Eisen, Aaron E. Darling
https://doi.org/10.7287/peerj.preprints.260v1

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

March 27, 2018
Genome rearrangements and phylogeny reconstruction in Yersinia pestis
Olga O. Bochkareva, Natalia O. Dranenko, Elena S. Ocheredko, German M. Kanevsky, Yaroslav N. Lozinsky, Vera A. Khalaycheva, Irena I. Artamonova, Mikhail S. Gelfand
https://doi.org/10.7717/peerj.4545 PubMed 29607260
August 27, 2015
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang, Jeff Froula, Rob Egan, Zhong Wang
https://doi.org/10.7717/peerj.1165 PubMed 26336640
June 2, 2015
NxRepair: error correction in de novo sequence assembly using Nextera mate pairs
Rebecca R. Murphy, Jared O’Connell, Anthony J. Cox, Ole Schulz-Trieglaff
https://doi.org/10.7717/peerj.996 PubMed 26056623
October 14, 2014
An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella
James B. Pettengill, Yan Luo, Steven Davis, Yi Chen, Narjol Gonzalez-Escalona, Andrea Ottesen, Hugh Rand, Marc W. Allard, Errol Strain
https://doi.org/10.7717/peerj.620 PubMed 25332847

1 Answer

0
question about the primer mix