Polycystic ovarian syndrome (PCOS) and recurrent spontaneous abortion (RSA) are associated with the PI3K-AKT pathway activation

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Biochemistry, Biophysics and Molecular Biology

Main article text

 

Introduction

Materials and Methods

Data acquisition and pre-processing

WGCAN analysis

Function enrichment analysis

Gene set enrichment analysis

KEGG pathway analysis

Identifying the compounds that inhibited interest genes expression

Cell culture and transfection

Real-time quantitative PCR

Cell viability

Transwell

Flow cytometry

Statistical analysis

Results

Identifying gene modules closely associated with the PCOS and RSA phenotypes

Function enrichment analysis of gene modules related to PCOS and RSA

Identifying the biological processes closely associated with the PCOS and RSA phenotypes

Identifying the shared genes between the PCOS and RSA phenotypes

The activation of PI3K-AKT pathway was closely associated with the PCOS and RSA phenotypes

Identifying the compounds associated with kinase inhibition

Experimental validation

Discussion

Conclusion

Supplemental Information

Identifying gene modules closely associated with the PCOS and RSA phenotype.

(A) Soft threshold filtering in PCOS data set and the relationship between soft threshold and connectivity. (B) Hierarchical clustering trees in WGCNA analysis within PCOS dataset. (C) Soft threshold filtering in RSA data set and the relationship between soft threshold and connectivity. (D) Hierarchical clustering tree for WGCNA analysis in RSA dataset.

DOI: 10.7717/peerj.17950/supp-1

Correlation analysis based on ssGSEA enrichment scores to explore PSCO and RSA-associated gene modules with critical pathway genes.

(A) Correlation analysis of gene modules significantly positively associated with PCOS (MEplum1, MEgreen, MEsteelblue, and MEdarkgreen) with angiogenesis, WNT signaling pathway, and chromosome segregation. (B) Correlation analysis of gene modules significantly positively associated with RSA (MEmidnightblue and MEgreen) with angiogenesis, WNT signaling pathway, and positive regulation of MAPK cascade.

DOI: 10.7717/peerj.17950/supp-2

Additional Information and Declarations

Competing Interests

The authors declare that they have no competing interests.

Author Contributions

Wenjing Lin conceived and designed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Yuting Wang conceived and designed the experiments, performed the experiments, analyzed the data, authored or reviewed drafts of the article, and approved the final draft.

Lei Zheng performed the experiments, analyzed the data, prepared figures and/or tables, and approved the final draft.

Data Availability

The following information was supplied regarding data availability:

The datasets generated and/or analyzed during the current study are available at GEO: GSE19123, GSE168404, GSE113790, GSE178535.

The raw data is available at GitHub and Zenodo:

- https://github.com/6Linwenjing/Updated-new-data.git

- 6Linwenjing. (2024). 6Linwenjing/Updated-new-data: My updated data (v.1.1.0). Zenodo. https://doi.org/10.5281/zenodo.12198919

Funding

The authors received no funding for this work.

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