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https://doi.org/10.7717/peerj.19683 PubMed 40661899

June 10, 2025

Disentangling the gut microbiota of Aldabra giant tortoises of different ages and environments

Douaa Zakaria, Camillo Sandri, Monica Modesto, Caterina Spiezio, Donatella Scarafile, Allen Cedras, Luigimaria Borruso, Paolo Manghi, Paolo Trevisi, Nicola Segata, Paola Mattarelli, Masanori Arita

https://doi.org/10.7717/peerj.19566 PubMed 40520638

May 27, 2025

Comparative analysis of fecal microbiota of central and eastern black-necked cranes (Grus nigricollis) wintering in Yunnan Province, China

Ruimei Wang, Yixuan Wang, Lulu Deng, Binghui Wang, Mingfei Shi, Zeya Yang, Dong Hu, Zijiao Zhao, Ruiling Yuan, Jiuxuan Zhou

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April 30, 2025

A study of repetitive sequences in the genome of Sinopodisma qinlingensis

Xiongyan Yin, Nan Zhang, Xiaoyu Li, Lijia Gan, Yimeng Nie, Yuan Huang

https://doi.org/10.7717/peerj.19358 PubMed 40321811

April 15, 2025

Identification of single nucleotide polymorphisms (SNPs) potentially associated with residual feed intake in Qinchuan beef cattle by hypothalamus and duodenum RNA-Seq data

Zonghua Su, Chenglong Li, Chaoyun Yang, YanLing Ding, Xiaonan Zhou, Junjie Xu, Chang Qu, Yuangang Shi, Cong-Jun Li, Xiaolong Kang

https://doi.org/10.7717/peerj.19270 PubMed 40256725

March 21, 2025

Comparative genomic analysis of emerging non-typeable Haemophilus influenzae (NTHi) causing emerging septic arthritis in Atlanta

Brianna J. Bixler, Charlotte J. Royer, Robert A. Petit III, Abraham G. Moller, Samantha Sefton, Stepy Thomas, Amy Tunali, Lauren F. Collins, Monica M. Farley, Sarah W. Satola, Timothy D. Read

https://doi.org/10.7717/peerj.19081 PubMed 40130174

February 12, 2025

The in vitro antimicrobial activity of linezolid against unconventional pathogens

Ting Wang, Huiyue Zhang, Rui Feng, Jieru Ren, Xinping Xu, Shujuan Sun

https://doi.org/10.7717/peerj.18825 PubMed 39959821

January 13, 2025

Genome-wide analyses of the NAC transcription factor gene family in Acer palmatum provide valuable insights into the natural process of leaf senescence

Xin Meng, Chun Feng, Zhu Chen, Faheem Afzal Shah, Yue Zhao, Yuzhi Fei, Hongfei Zhao, Jie Ren

https://doi.org/10.7717/peerj.18817 PubMed 39822972

December 19, 2024

Diversity analysis of microorganisms on the surface of four summer fruit varieties in Baotou, Inner Mongolia, China

Shan He, Li Gao, Zhuomin Zhang, Zhihui Ming, Fang Gao, Shuyi Ma, Mingxin Zou

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October 29, 2024

Genomic evaluation of the probiotic and pathogenic features of Enterococcus faecalis from human breast milk and comparison with the isolates from animal milk and clinical specimens

Lobna Badr, Muhammad Yasir, Areej A. Alkhaldy, Samah A. Soliman, Magdah Ganash, Safaa A. Turkistani, Asif A. Jiman-Fatani, Ibrahim A. Al-Zahrani, Esam I. Azhar

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October 24, 2024

Evidence for sweep signatures in antibiotic-resistant strains in three species of bacteria

Anjani Pradhananga, Lorena Benitez-Rivera, Candace Clark, Kaho H. Tisthammer, Pleuni S. Pennings

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May 27, 2024

Biodegradation of crystal violet by newly isolated bacteria

Soon Jun Kwak, Jiyul Park, Yuri Sim, Hisu Choi, Jein Cho, Young-Man Lee

https://doi.org/10.7717/peerj.17442 PubMed 38818456

April 5, 2024

The comparative plastisphere microbial community profile at Kung Wiman beach unveils potential plastic-specific degrading microorganisms

Nutsuda Chaimusik, Natthaphong Sombuttra, Yeampon Nakaramontri, Penjai Sompongchaiyakul, Chawalit Charoenpong, Bungonsiri Intra, Jirayut Euanorasetr

https://doi.org/10.7717/peerj.17165 PubMed 38590706

March 26, 2024

Yushuo Zhang, Xin He, Xiuhong Mo, Hong Wu, Dapeng Zhao

https://doi.org/10.7717/peerj.16979 PubMed 38560462

February 20, 2024

Activity of biogenic silver nanoparticles in planktonic and biofilm-associated Corynebacterium pseudotuberculosis

Laerte Marlon Santos, Daniela Méria Rodrigues, Bianca Vilas Boas Alves, Mauricio Alcântara Kalil, Vasco Azevedo, Debmalya Barh, Roberto Meyer, Nelson Duran, Ljubica Tasic, Ricardo Wagner Portela

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February 7, 2024

Peanut-based intercropping systems altered soil bacterial communities, potential functions, and crop yield

Zhu Liu, Zhenwu Nan, Songming Lin, Weiwei Meng, Liyong Xie, Haiqiu Yu, Zheng Zhang, Shubo Wan

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November 30, 2023

Amlodipine and lufenuron as repurposing drugs against Sporothrix brasiliensis

Vanice Rodrigues Poester, Jéssica Estefania Dávila Hidalgo, Lara Severo Jardim, Mariana Rodrigues Trápaga, Vanessa Brito de Souza Rabello, Rodrigo Almeida-Paes, Rosely Maria Zancope-Oliveira, Melissa Orzechowski Xavier

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November 23, 2023

Genomic analyses indicate resilience of a commercially and culturally important marine gastropod snail to climate change

Matt J. Nimbs, Curtis Champion, Simon E. Lobos, Hamish A. Malcolm, Adam D. Miller, Kate Seinor, Stephen D.A. Smith, Nathan Knott, David Wheeler, Melinda A. Coleman

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November 17, 2023

Microbes within the building envelope—a case study on the patterns of colonization and potential sampling bias

Lucy R. Davies, Aitor Barbero-López, Veli-Matti Lähteenmäki, Antti Salonen, Filip Fedorik, Antti Haapala, Phillip C. Watts

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September 18, 2023

Whole-genome resequencing analysis of the medicinal plant Gardenia jasminoides

Xinyu Xu, Bihua Chen, Juan Zhang, Siren Lan, Shasha Wu

https://doi.org/10.7717/peerj.16056 PubMed 37744244

June 20, 2023

Genotypic characteristics of Uropathogenic Escherichia coli isolated from complicated urinary tract infection (cUTI) and asymptomatic bacteriuria—a relational analysis

Lalitha Maniam, Kumutha Malar Vellasamy, Teng Aik Ong, Cindy Shuan Ju Teh, Kartini Abdul Jabar, Vanitha Mariappan, Vallikkannu Narayanan, Jamuna Vadivelu, Vinod Pallath

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March 18, 2022

The mRNA and miRNA profiles of goat bronchial epithelial cells stimulated by Pasteurella multocida strains of serotype A and D

Qi An, Si Chen, Luyin Zhang, Zhenxing Zhang, Yiwen Cheng, Haotian Wu, Ang Liu, Zhen Chen, Bin Li, Jie Chen, Yiying Zheng, Churiga Man, Fengyang Wang, Qiaoling Chen, Li Du

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March 1, 2022

Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens

Nicholas M. Thomson, Rachel Gilroy, Maria Getino, Ebenezer Foster-Nyarko, Arnoud H.M. van Vliet, Roberto M. La Ragione, Mark J. Pallen

https://doi.org/10.7717/peerj.12935 PubMed 35251780

February 16, 2022

Differences in the composition and predicted functions of the intestinal microbiome of obese and normal weight adult dogs

Pamela Thomson, Rodrigo Santibáñez, Camila Rodríguez-Salas, Carla Flores-Yañez, Daniel Garrido

https://doi.org/10.7717/peerj.12695 PubMed 35190784

October 21, 2021

Fecal microbiota transplantation mitigates bone loss by improving gut microbiome composition and gut barrier function in aged rats

Sicong Ma, Ning Wang, Pu Zhang, Wen Wu, Lingjie Fu

https://doi.org/10.7717/peerj.12293 PubMed 34721980

January 18, 2021

Analysis of codon usage patterns of the chloroplast genome in Delphinium grandiflorum L. reveals a preference for AT-ending codons as a result of major selection constraints

Huirong Duan, Qian Zhang, Chunmei Wang, Fang Li, Fuping Tian, Yuan Lu, Yu Hu, Hongshan Yang, Guangxin Cui

https://doi.org/10.7717/peerj.10787 PubMed 33552742

January 14, 2021

Comparative analysis and implications of the chloroplast genomes of three thistles (Carduus L., Asteraceae)

Joonhyung Jung, Hoang Dang Khoa Do, JongYoung Hyun, Changkyun Kim, Joo-Hwan Kim

https://doi.org/10.7717/peerj.10687 PubMed 33520461

December 18, 2020

Macrel: antimicrobial peptide screening in genomes and metagenomes

Célio Dias Santos-Júnior, Shaojun Pan, Xing-Ming Zhao, Luis Pedro Coelho

https://doi.org/10.7717/peerj.10555 PubMed 33384902

December 3, 2020

Analysis of 44 Vibrio anguillarum genomes reveals high genetic diversity

Mie Johanne Hansen, Egle Kudirkiene, Inger Dalsgaard

https://doi.org/10.7717/peerj.10451 PubMed 33344086

December 2, 2020

Distribution of phylogenetic groups, adhesin genes, biofilm formation, and antimicrobial resistance of uropathogenic Escherichia coli isolated from hospitalized patients in Thailand

Nipaporn Tewawong, Siriporn Kowaboot, Yaowaluk Pimainog, Naiyana Watanagul, Thanunrat Thongmee, Yong Poovorawan

https://doi.org/10.7717/peerj.10453 PubMed 33344087

July 15, 2020

Biofilm released cells can easily be obtained in a fed-batch system using ica+ but not with ica- isolates

Vânia Gaio, Nuno Cerca

https://doi.org/10.7717/peerj.9549 PubMed 32742809

June 15, 2020

Optimizing a reliable ex vivo human blood model to analyze expression of Staphylococcus epidermidis genes

Susana Brás, Ângela França, Nuno Cerca

https://doi.org/10.7717/peerj.9295 PubMed 32587796

May 4, 2020

Fast sequence-based microsatellite genotyping development workflow

Olivier Lepais, Emilie Chancerel, Christophe Boury, Franck Salin, Aurélie Manicki, Laura Taillebois, Cyril Dutech, Abdeldjalil Aissi, Cecile F.E. Bacles, Françoise Daverat, Sophie Launey, Erwan Guichoux

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