Impact of coexisting type 2 diabetes mellitus on the urinary microbiota of kidney stone patients

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Microbiology

Main article text

 

Introduction

Methods and Materials

Patients

Inclusion criteria for kidney stone disease (KSD) patients

Exclusion criteria for KSD patients

Inclusion and exclusion criteria for patients with KSD and diabetes (KSD + DM)

Urine sample collection

Bacterial isolation and bioinformatics

Statistical analysis

Results

A comparison between KSD+DM and KSD-only groups

The bacterial diversity exhibited differences between KSD+DM and KSD-only patients

Comparison of bacterial composition between groups

Correlation of fasting blood glucose and HbA1c values with differentially abundant bacteria between groups

Discussion

Limitations to consider when interpreting our findings

Conclusion

Supplemental Information

Stability of microbial compositions over hypertension and dyslipidemia

Principal Coordinate Analysis (PCoA) was conducted based on Bray-Curtis distances at the Amplicon Sequence Variant (ASV) level to explore microbial compositions concerning hypertension and dyslipidemia. Adonis analysis was performed to assess the stability of microbial configurations over varying hypertension and dyslipidemia.

DOI: 10.7717/peerj.16920/supp-1

Additional Information and Declarations

Competing Interests

The authors declare there are no competing interests.

Author Contributions

Xiang Li conceived and designed the experiments, performed the experiments, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Yifan Tang performed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Zhenyi Xu performed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Hao Lin performed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Shichao Wei performed the experiments, analyzed the data, authored or reviewed drafts of the article, and approved the final draft.

Jiayi Sheng performed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Lei Hu performed the experiments, authored or reviewed drafts of the article, and approved the final draft.

Shiyu Wang performed the experiments, prepared figures and/or tables, and approved the final draft.

Yu Zhao performed the experiments, prepared figures and/or tables, and approved the final draft.

Zhi Li performed the experiments, prepared figures and/or tables, and approved the final draft.

Chaowei Fu performed the experiments, prepared figures and/or tables, and approved the final draft.

Yifeng Gu performed the experiments, prepared figures and/or tables, and approved the final draft.

Qun Wei performed the experiments, prepared figures and/or tables, and approved the final draft.

Fengping Liu conceived and designed the experiments, performed the experiments, analyzed the data, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Ninghan Feng conceived and designed the experiments, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Weiguo Chen conceived and designed the experiments, prepared figures and/or tables, authored or reviewed drafts of the article, and approved the final draft.

Human Ethics

The following information was supplied relating to ethical approvals (i.e., approving body and any reference numbers):

Ethics Review Board of the Second Peoples’ Hospital of Wuxi (No: 201802)

Data Availability

The following information was supplied regarding data availability:

The raw sequencing data for this project are available at the GenBank Sequence Read Archive: PRJNA561017, SRP218817.

Funding

This work was supported by the National Natural Science Foundation of China (82370777, 81874142 and 82073041), the Zhejiang Provincial Natural Science Foundation of China (LXR22H160001, and LY22H160011), and the Gusu Medical Talent Foundation (GSWS2020021). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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