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PeerJ Reviewer

1,185 Points

Contributions by role

Contributions by subject area

Kumari Sonal Choudhary

PeerJ Reviewer

Summary

I am a computational biologist with 9 years of diversified research history in bioinformatics and systems biology. I have experience in genome annotation, evolutionary studies, transcriptomics and proteomics analysis, mathematical modeling, RNAseq analysis, computational tool development, and data mining.

Biochemistry Bioengineering Bioinformatics Biotechnology Computational Biology Computational Science Data Mining & Machine Learning Databases Ecology Evolutionary Studies Genetics Genomics Infectious Diseases Mathematical Biology Metabolic Sciences Microbiology Molecular Biology Oncology

Past or current institution affiliations

University of Iceland

Work details

Bioinformatics Scientist

The children’s hospital of Philadelphia

March 2021

Center for spatial and functional genomics

Senior Research Fellow and Database Curator

University of California, San Diego

January 2017

Bioengineering

PhD

International center for genetic engineering and Biotechnology, Trieste, Italy

October 2011 - September 2014

Protein structure and Bioinformatics

Postdoctorate

University of Iceland

February 2015 - December 2016

Center for Systems Biology

Websites

PeerJ Contributions

Edited 10
Reviewed 1

Academic Editor on

October 25, 2021

Integrating microRNA expression, miRNA-mRNA regulation network and signal pathway: a novel strategy for lung cancer biomarker discovery

Renqing Nie, Wenling Niu, Tang Tang, Jin Zhang, Xiaoyi Zhang

https://doi.org/10.7717/peerj.12369 PubMed 34754623

September 3, 2021

Analysis of microRNA expression in CD133 positive cancer stem‑like cells of human osteosarcoma cell line MG-63

Xiong Shu, Weifeng Liu, Huiqi Liu, Hui Qi, Chengai Wu, Yu-Liang Ran

https://doi.org/10.7717/peerj.12115 PubMed 34557357

May 14, 2021

Identification of diagnostic genes and vital microRNAs involved in rheumatoid arthritis: based on data mining and experimental verification

Conglin Ren, Mingshuang Li, Yang Zheng, Fengqing Wu, Weibin Du, Renfu Quan

https://doi.org/10.7717/peerj.11427 PubMed 34040897

May 13, 2021

Identification of Vitamin D-related gene signature to predict colorectal cancer prognosis

Luping Bu, Fengxing Huang, Mengting Li, Yanan Peng, Haizhou Wang, Meng Zhang, Liqun Peng, Lan Liu, Qiu Zhao

https://doi.org/10.7717/peerj.11430 PubMed 34035992

April 20, 2021

Development and validation of an oxidative stress—associated prognostic risk model for melanoma

Yu Yang, Xuan Long, Kun Li, Guiyun Li, Xiaohong Yu, Ping Wen, Jun Luo, Xiaobin Tian, Jinmin Zhao

https://doi.org/10.7717/peerj.11258 PubMed 33976978

April 14, 2021

Bioinformatics analysis of laryngeal squamous cell carcinoma: seeking key candidate genes and pathways

Jinhua Ma, Xiaodong Hu, Baoqiang Dai, Qiang Wang, Hongqin Wang

https://doi.org/10.7717/peerj.11259 PubMed 33954053

March 31, 2021

Bioinformatic strategies for the analysis of genomic aberrations detected by targeted NGS panels with clinical application

Jakub Hynst, Veronika Navrkalova, Karol Pal, Sarka Pospisilova

https://doi.org/10.7717/peerj.10897 PubMed 33850640

March 8, 2021

Integrated analysis of immune-related long noncoding RNAs as diagnostic biomarkers in psoriasis

Feixiang Fan, Zhen Huang, Yongfeng Chen

https://doi.org/10.7717/peerj.11018 PubMed 33732554

February 23, 2021

The long non-coding RNA MEG3 plays critical roles in the pathogenesis of cholesterol gallstone

Changlin Qian, Weiqing Qiu, Jie Zhang, Zhiyong Shen, Hua Liu, Yongjie Zhang

https://doi.org/10.7717/peerj.10803 PubMed 33665015

February 16, 2021

Tissue inhibitor of metalloproteinase-1 (TIMP-1) as a prognostic biomarker in gastrointestinal cancer: a meta-analysis

Lili Qin, Yueqi Wang, Na Yang, Yangyu Zhang, Tianye Zhao, Yanhua Wu, Jing Jiang

https://doi.org/10.7717/peerj.10859 PubMed 33628641

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

September 18, 2017

The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species

Caihui Chen, Yongjie Zheng, Sian Liu, Yongda Zhong, Yanfang Wu, Jiang Li, Li-An Xu, Meng Xu

https://doi.org/10.7717/peerj.3820 PubMed 28948105