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Kumari Sonal Choudhary
PeerJ Reviewer
1,185 Points

Contributions by role

Reviewer 85
Editor 1,100

Contributions by subject area

Bioinformatics
Conservation Biology
Genetics
Molecular Biology
Plant Science
Environmental Sciences
Genomics
Microbiology
Biodiversity
Cell Biology
Oncology
Otorhinolaryngology
Medical Genetics
Biochemistry
Gastroenterology and Hepatology
Respiratory Medicine
Rheumatology
Data Mining and Machine Learning
Orthopedics
Evidence Based Medicine
Dermatology
Nutrition
Metabolic Sciences
Hematology

Kumari Sonal Choudhary

PeerJ Reviewer

Summary

I am a computational biologist with 9 years of diversified research history in bioinformatics and systems biology. I have experience in genome annotation, evolutionary studies, transcriptomics and proteomics analysis, mathematical modeling, RNAseq analysis, computational tool development, and data mining.

Biochemistry Bioengineering Bioinformatics Biotechnology Computational Biology Computational Science Data Mining & Machine Learning Databases Ecology Evolutionary Studies Genetics Genomics Infectious Diseases Mathematical Biology Metabolic Sciences Microbiology Molecular Biology Oncology

Past or current institution affiliations

UC San Diego
University of Iceland

Work details

Bioinformatics Scientist

The children’s hospital of Philadelphia
March 2021
Center for spatial and functional genomics

Senior Research Fellow and Database Curator

University of California, San Diego
January 2017
Bioengineering

PhD

International center for genetic engineering and Biotechnology, Trieste, Italy
October 2011 - September 2014
Protein structure and Bioinformatics

Postdoctorate

University of Iceland
February 2015 - December 2016
Center for Systems Biology

Websites

  • Google Scholar
  • Metabolomics Workbench
  • LinkedIn

PeerJ Contributions

  • Edited 10
  • Reviewed 1

Academic Editor on

October 25, 2021
Integrating microRNA expression, miRNA-mRNA regulation network and signal pathway: a novel strategy for lung cancer biomarker discovery
Renqing Nie, Wenling Niu, Tang Tang, Jin Zhang, Xiaoyi Zhang
https://doi.org/10.7717/peerj.12369 PubMed 34754623
September 3, 2021
Analysis of microRNA expression in CD133 positive cancer stem‑like cells of human osteosarcoma cell line MG-63
Xiong Shu, Weifeng Liu, Huiqi Liu, Hui Qi, Chengai Wu, Yu-Liang Ran
https://doi.org/10.7717/peerj.12115 PubMed 34557357
May 14, 2021
Identification of diagnostic genes and vital microRNAs involved in rheumatoid arthritis: based on data mining and experimental verification
Conglin Ren, Mingshuang Li, Yang Zheng, Fengqing Wu, Weibin Du, Renfu Quan
https://doi.org/10.7717/peerj.11427 PubMed 34040897
May 13, 2021
Identification of Vitamin D-related gene signature to predict colorectal cancer prognosis
Luping Bu, Fengxing Huang, Mengting Li, Yanan Peng, Haizhou Wang, Meng Zhang, Liqun Peng, Lan Liu, Qiu Zhao
https://doi.org/10.7717/peerj.11430 PubMed 34035992
April 20, 2021
Development and validation of an oxidative stress—associated prognostic risk model for melanoma
Yu Yang, Xuan Long, Kun Li, Guiyun Li, Xiaohong Yu, Ping Wen, Jun Luo, Xiaobin Tian, Jinmin Zhao
https://doi.org/10.7717/peerj.11258 PubMed 33976978
April 14, 2021
Bioinformatics analysis of laryngeal squamous cell carcinoma: seeking key candidate genes and pathways
Jinhua Ma, Xiaodong Hu, Baoqiang Dai, Qiang Wang, Hongqin Wang
https://doi.org/10.7717/peerj.11259 PubMed 33954053
March 31, 2021
Bioinformatic strategies for the analysis of genomic aberrations detected by targeted NGS panels with clinical application
Jakub Hynst, Veronika Navrkalova, Karol Pal, Sarka Pospisilova
https://doi.org/10.7717/peerj.10897 PubMed 33850640
March 8, 2021
Integrated analysis of immune-related long noncoding RNAs as diagnostic biomarkers in psoriasis
Feixiang Fan, Zhen Huang, Yongfeng Chen
https://doi.org/10.7717/peerj.11018 PubMed 33732554
February 23, 2021
The long non-coding RNA MEG3 plays critical roles in the pathogenesis of cholesterol gallstone
Changlin Qian, Weiqing Qiu, Jie Zhang, Zhiyong Shen, Hua Liu, Yongjie Zhang
https://doi.org/10.7717/peerj.10803 PubMed 33665015
February 16, 2021
Tissue inhibitor of metalloproteinase-1 (TIMP-1) as a prognostic biomarker in gastrointestinal cancer: a meta-analysis
Lili Qin, Yueqi Wang, Na Yang, Yangyu Zhang, Tianye Zhao, Yanhua Wu, Jing Jiang
https://doi.org/10.7717/peerj.10859 PubMed 33628641

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

September 18, 2017
The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species
Caihui Chen, Yongjie Zheng, Sian Liu, Yongda Zhong, Yanfang Wu, Jiang Li, Li-An Xu, Meng Xu
https://doi.org/10.7717/peerj.3820 PubMed 28948105