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Jonathan Eisen
PeerJ Editor & Author
2,735 Points

Contributions by role

Author 1,755
Preprint Author 280
Editor 700

Contributions by subject area

Biodiversity
Bioinformatics
Genomics
Microbiology
Veterinary Medicine
Ecology
Biogeography
Conservation Biology
Marine Biology
Plant Science
Bioengineering
Computational Biology
Evolutionary Studies
Taxonomy
Food Science and Technology
Nutrition
Science and Medical Education
Computational Science
Infectious Diseases
Respiratory Medicine
Emergency and Critical Care
Public Health

Jonathan A Eisen

PeerJ Editor & Author

Summary

Full Professor, University of California, Davis (Depts. of Medical Microbiology and Immunology and Evolution and Ecology) and Adjunct Scientist DOE Joint Genome Institute.

Obsessed with microbes, the Redsox, open science, and STEM diversity.

Bioinformatics Biosphere Interactions Climate Change Biology Computational Biology Ecology Ecotoxicology Evolutionary Studies Genetics Genomics Infectious Diseases Microbiology

Editorial Board Member

PeerJ - the Journal of Life & Environmental Sciences

Past or current institution affiliations

UC Davis

Work details

Professor

University of California, Davis

Websites

  • Google Scholar
  • Microsoft Academic Search
  • Lab Page
  • Blog

PeerJ Contributions

  • Articles 13
  • Preprints 7
  • Edited 6
October 20, 2020
Isolation and sequence-based characterization of a koala symbiont: Lonepinella koalarum
Katherine E. Dahlhausen, Guillaume Jospin, David A. Coil, Jonathan A. Eisen, Laetitia G.E. Wilkins
https://doi.org/10.7717/peerj.10177 PubMed 33150080
June 9, 2020
Bacterial communities associated with cell phones and shoes
David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
https://doi.org/10.7717/peerj.9235 PubMed 32551196
May 23, 2018
Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota
Katti R. Horng, Holly H. Ganz, Jonathan A. Eisen, Stanley L. Marks
https://doi.org/10.7717/peerj.4827 PubMed 29844978
March 12, 2018
Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial communities associated with antibiotic treatment
Katherine E. Dahlhausen, Ladan Doroud, Alana J. Firl, Adam Polkinghorne, Jonathan A. Eisen
https://doi.org/10.7717/peerj.4452 PubMed 29576947
December 5, 2017
A microbial survey of the International Space Station (ISS)
Jenna M. Lang, David A. Coil, Russell Y. Neches, Wendy E. Brown, Darlene Cavalier, Mark Severance, Jarrad T. Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
https://doi.org/10.7717/peerj.4029 PubMed 29492330
August 16, 2017
Microbiome succession during ammonification in eelgrass bed sediments
Cassandra L. Ettinger, Susan L. Williams, Jessica M. Abbott, John J. Stachowicz, Jonathan A. Eisen
https://doi.org/10.7717/peerj.3674 PubMed 28828269
April 27, 2017
Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge
Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
https://doi.org/10.7717/peerj.3246 PubMed 28462046
March 22, 2016
Growth of 48 built environment bacterial isolates on board the International Space Station (ISS)
David A. Coil, Russell Y. Neches, Jenna M. Lang, Wendy E. Brown, Mark Severance, Darlene Cavalier, Jonathan A. Eisen
https://doi.org/10.7717/peerj.1842 PubMed 27019789
November 12, 2015
Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter
David A. Coil, Jennifer C. Flanagan, Andrew Stump, Alexandra Alexiev, Jenna M. Lang, Jonathan A. Eisen
https://doi.org/10.7717/peerj.1400 PubMed 26587357
May 14, 2015
Swabs to genomes: a comprehensive workflow
Madison I. Dunitz, Jenna M. Lang, Guillaume Jospin, Aaron E. Darling, Jonathan A. Eisen, David A. Coil
https://doi.org/10.7717/peerj.960 PubMed 26020012
December 9, 2014
The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types
Jenna M. Lang, Jonathan A. Eisen, Angela M. Zivkovic
https://doi.org/10.7717/peerj.659 PubMed 25538865
May 27, 2014
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
Christopher W. Beitel, Lutz Froenicke, Jenna M. Lang, Ian F. Korf, Richard W. Michelmore, Jonathan A. Eisen, Aaron E. Darling
https://doi.org/10.7717/peerj.415 PubMed 24918035
January 9, 2014
PhyloSift: phylogenetic analysis of genomes and metagenomes
Aaron E. Darling, Guillaume Jospin, Eric Lowe, Frederick A. Matsen, Holly M. Bik, Jonathan A. Eisen
https://doi.org/10.7717/peerj.243 PubMed 24482762
August 30, 2019 - Version: 1
Host-associated microbiomes and their roles in marine ecosystem functions
Laetitia G.E. Wilkins, Matthieu Leray, Benedict Yuen, Raquel Peixoto, Tiago J. Pereira, Holly M. Bik, David A. Coil, J. Emmett Duffy, Edward Allen Herre, Harilaos Lessios, Noelle Lucey, Luis C. Mejia, Aaron O'Dea, Douglas B. Rasher, Koty Sharp, Emilia M. Sogin, Robert W. Thacker, Rebecca Vega Thurber, William T. Wcislo, Elizabeth G. Wilbanks, Jonathan A. Eisen
https://doi.org/10.7287/peerj.preprints.27930v1
February 1, 2019 - Version: 1
Bacterial communities associated with cell phones and shoes
David A Coil, Russell Y Neches, Jenna M Lang, Guillaume Jospin, Wendy E Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A Gilbert, Jonathan A Eisen
https://doi.org/10.7287/peerj.preprints.27514v1
May 3, 2018 - Version: 1
Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota
Katti R Horng, Holly H Ganz, Jonathan A Eisen, Stanley L Marks
https://doi.org/10.7287/peerj.preprints.26912v1
April 29, 2017 - Version: 1
Microbiome succession during ammonification in eelgrass bed sediments
Cassandra L Ettinger, Susan L Williams, Jessica M Abbott, John J Stachowicz, Jonathan A Eisen
https://doi.org/10.7287/peerj.preprints.2956v1
January 16, 2016 - Version: 1
Growth of 48 built environment bacterial isolates on board the International Space Station (ISS)
David A Coil, Russell Y Neches, Jenna M Lang, Wendy E Brown, Mark Severance, Darlene Darlene Cavalier, Jonathan A Eisen
https://doi.org/10.7287/peerj.preprints.1654v1
January 29, 2015 - Version: 2
Swabs to genomes: a comprehensive workflow
Madison I Dunitz, Jenna M Lang, Guillaume Jospin, Aaron E Darling, Jonathan A Eisen, David A Coil
https://doi.org/10.7287/peerj.preprints.453v2
February 28, 2014 - Version: 1
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
Christopher W. Beitel, Lutz Froenicke, Jenna M. Lang, Ian F. Korf, Richard W. Michelmore, Jonathan A. Eisen, Aaron E. Darling
https://doi.org/10.7287/peerj.preprints.260v1

Academic Editor on

January 10, 2017
Microbial communities mediating algal detritus turnover under anaerobic conditions
Jessica M. Morrison, Chelsea L. Murphy, Kristina Baker, Richard M. Zamor, Steve J. Nikolai, Shawn Wilder, Mostafa S. Elshahed, Noha H. Youssef
https://doi.org/10.7717/peerj.2803 PubMed 28097050
December 22, 2016
Exploring the cockatiel (Nymphicus hollandicus) fecal microbiome, bacterial inhabitants of a worldwide pet
Luis David Alcaraz, Apolinar M. Hernández, Mariana Peimbert
https://doi.org/10.7717/peerj.2837 PubMed 28028487
February 8, 2016
PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes
Ivan Gregor, Johannes Dröge, Melanie Schirmer, Christopher Quince, Alice C. McHardy
https://doi.org/10.7717/peerj.1603 PubMed 26870609
September 23, 2014
Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer
Emma L. Doughty, Martin J. Sergeant, Ifedayo Adetifa, Martin Antonio, Mark J. Pallen
https://doi.org/10.7717/peerj.585 PubMed 25279265
April 10, 2014
Automated electronic medical record sepsis detection in the emergency department
Su Q. Nguyen, Edwin Mwakalindile, James S. Booth, Vicki Hogan, Jordan Morgan, Charles T. Prickett, John P. Donnelly, Henry E. Wang
https://doi.org/10.7717/peerj.343 PubMed 24765577
October 22, 2013
PhyBin: binning trees by topology
Ryan R. Newton, Irene L.G. Newton
https://doi.org/10.7717/peerj.187 PubMed 24167782