Frédéric Mahé

PeerJ Author

Summary

Biodiversity Bioinformatics Ecology Ecosystem Science Evolutionary Studies Genomics Marine Biology Molecular Biology

Editorial Board Member

Work details

Postdoctoral Researcher

Technische Universität Kaiserslautern

Department of Ecology

Websites

ORCID

PeerJ Contributions

October 18, 2016

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé

https://doi.org/10.7717/peerj.2584 PubMed 27781170

February 25, 2016

Comparison of three clustering approaches for detecting novel environmental microbial diversity

Dominik Forster, Micah Dunthorn, Thorsten Stoeck, Frédéric Mahé

https://doi.org/10.7717/peerj.1692 PubMed 26966652

December 10, 2015

Swarm v2: highly-scalable and high-resolution amplicon clustering

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7717/peerj.1420 PubMed 26713226

September 25, 2014

Swarm: robust and fast clustering method for amplicon-based studies

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7717/peerj.593 PubMed 25276506

September 1, 2016 - Version: 1

VSEARCH: a versatile open source tool for metagenomics

Torbjørn Rognes, Tomáš Flouri, Ben Nichols, Christopher Quince, Frédéric Mahé

https://doi.org/10.7287/peerj.preprints.2409v1

October 2, 2015 - Version: 1

Comparison of three clustering approaches for detecting novel environmental microbial diversity

Dominik Forster, Micah Dunthorn, Thorsten Stoeck, Frédéric Mahé

https://doi.org/10.7287/peerj.preprints.1414v1

July 10, 2015 - Version: 2

Swarm v2: highly-scalable and high-resolution amplicon clustering

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7287/peerj.preprints.1222v2

May 12, 2014 - Version: 1

Swarm: robust and fast clustering method for amplicon-based studies

Frédéric Mahé, Torbjørn Rognes, Christopher Quince, Colomban de Vargas, Micah Dunthorn

https://doi.org/10.7287/peerj.preprints.386v1

1 Question

0

SWIPE as a faster alternative to SWPS3 for exact pairwise sequence comparisons

about Speeding up all-against-all protein comparisons while maintaining sensitivity by considering subsequence-level homology

1 Answer

0

Does this mean that the sub-seeds of an OTU have at most 2xd differences with the seed?